Wall clock time and date at job start Mon Mar 30 2020 03:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00084 * 2 1 4 4 H 1.48501 * 109.47110 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47100 * 299.99920 * 3 2 1 6 6 H 1.48507 * 109.47397 * 59.99999 * 3 2 1 7 7 C 1.37876 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99535 * 172.70880 * 7 2 1 9 9 C 1.50703 * 120.00329 * 352.71297 * 7 2 1 10 10 C 1.52994 * 110.09742 * 302.42738 * 9 7 2 11 11 N 1.46898 * 109.47734 * 303.92329 * 10 9 7 12 12 C 1.54911 * 110.07515 * 180.90342 * 9 7 2 13 13 C 1.52500 * 105.32290 * 237.31684 * 12 9 7 14 14 H 1.09000 * 109.76410 * 272.21502 * 13 12 9 15 15 C 1.51616 * 116.56618 * 146.67580 * 13 12 9 16 16 C 1.53755 * 107.33357 * 180.27973 * 15 13 12 17 17 C 1.52731 * 111.36313 * 57.45095 * 16 15 13 18 18 C 1.53733 * 111.53774 * 305.26533 * 17 16 15 19 19 C 1.51780 * 107.25226 * 57.81432 * 18 17 16 20 20 H 1.09006 * 110.98364 * 56.07001 * 19 18 17 21 21 C 1.53274 * 115.79280 * 182.95021 * 19 18 17 22 22 H 0.96995 * 119.99987 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47198 * 63.92594 * 10 9 7 24 24 H 1.09001 * 109.47329 * 183.92169 * 10 9 7 25 25 H 1.00895 * 111.00391 * 174.02186 * 11 10 9 26 26 H 1.00896 * 110.99714 * 297.98016 * 11 10 9 27 27 H 1.08997 * 110.27308 * 118.35155 * 12 9 7 28 28 H 1.09002 * 110.27130 * 356.28146 * 12 9 7 29 29 H 1.09008 * 109.89491 * 299.75814 * 15 13 12 30 30 H 1.08998 * 109.89724 * 60.79500 * 15 13 12 31 31 H 1.09000 * 109.08421 * 178.03666 * 16 15 13 32 32 H 1.09005 * 109.08687 * 297.01916 * 16 15 13 33 33 H 1.09000 * 109.05538 * 184.73283 * 17 16 15 34 34 H 1.09001 * 108.99897 * 65.76301 * 17 16 15 35 35 H 1.08998 * 109.90032 * 298.37785 * 18 17 16 36 36 H 1.09002 * 109.96430 * 177.28758 * 18 17 16 37 37 H 1.09001 * 110.71742 * 38.79095 * 21 19 18 38 38 H 1.09006 * 110.71955 * 275.51550 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0780 -1.1979 -0.1182 9 6 1.2601 -2.4939 0.1667 10 6 0.4692 -2.4830 1.4762 11 7 1.3806 -2.2154 2.5967 12 6 2.2549 -3.6814 0.1561 13 6 1.7904 -4.5860 -0.9805 14 1 1.0456 -5.2903 -0.6101 15 6 2.8711 -5.3334 -1.7370 16 6 2.1754 -6.1653 -2.8269 17 6 1.3440 -5.2822 -3.7551 18 6 0.3360 -4.4285 -2.9687 19 6 1.1281 -3.5964 -1.9767 20 1 1.8868 -3.0011 -2.4847 21 6 0.3004 -2.7157 -1.0341 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2930 -1.7049 1.4339 24 1 -0.0087 -3.4521 1.6201 25 1 0.8700 -2.1065 3.4601 26 1 2.0771 -2.9409 2.6775 27 1 2.2147 -4.2162 1.1050 28 1 3.2670 -3.3245 -0.0346 29 1 3.5611 -4.6246 -2.1951 30 1 3.4125 -5.9912 -1.0571 31 1 2.9311 -6.6889 -3.4124 32 1 1.5222 -6.8983 -2.3533 33 1 0.8026 -5.9153 -4.4581 34 1 2.0117 -4.6237 -4.3106 35 1 -0.3622 -5.0747 -2.4368 36 1 -0.2091 -3.7747 -3.6496 37 1 -0.6030 -3.2354 -0.7148 38 1 0.0530 -1.7671 -1.5105 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260935208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:39 Heat of formation + Delta-G solvation = -44.994389 kcal Electronic energy + Delta-G solvation = -16541.619522 eV Core-core repulsion = 14188.555264 eV Total energy + Delta-G solvation = -2353.064258 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.75763 -37.26304 -33.87996 -33.71784 -32.22916 -29.56868 -27.66627 -26.49150 -24.83651 -22.27971 -21.58548 -20.78125 -19.90047 -17.81805 -16.73374 -16.43088 -15.58667 -15.50064 -15.23325 -15.00501 -14.68862 -14.16139 -13.84257 -13.53366 -13.22948 -12.85503 -12.79801 -12.64649 -12.42384 -12.26818 -12.15065 -11.70977 -11.41867 -11.26223 -11.12744 -10.92980 -10.69553 -10.63222 -10.41586 -10.10563 -9.05804 -7.87681 -5.91169 1.41934 1.46457 1.54294 2.56244 3.40508 3.79665 3.90665 4.03713 4.19248 4.33784 4.47401 4.54630 4.63345 4.73073 4.77112 4.81680 4.87651 4.93836 5.02149 5.10056 5.19988 5.21563 5.31436 5.32547 5.41365 5.44569 5.51050 5.53736 5.64764 5.74461 5.84851 5.91186 6.04355 6.26607 6.57592 6.79908 7.02291 7.11477 7.70861 9.15452 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.031516 B = 0.009587 C = 0.008724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.235095 B = 2919.983110 C = 3208.919596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.028 3.972 3 Si 0.931 3.069 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.469 4.469 8 H 0.034 0.966 9 C 0.066 3.934 10 C 0.088 3.912 11 N -0.836 5.836 12 C -0.098 4.098 13 C -0.086 4.086 14 H 0.060 0.940 15 C -0.105 4.105 16 C -0.111 4.111 17 C -0.113 4.113 18 C -0.106 4.106 19 C -0.085 4.085 20 H 0.049 0.951 21 C -0.086 4.086 22 H 0.250 0.750 23 H 0.059 0.941 24 H -0.013 1.013 25 H 0.328 0.672 26 H 0.331 0.669 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.024 0.976 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.106 -11.464 -3.412 12.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.170 4.170 3 Si 0.760 3.240 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.507 4.507 8 H 0.052 0.948 9 C 0.066 3.934 10 C -0.043 4.043 11 N -0.365 5.365 12 C -0.136 4.136 13 C -0.104 4.104 14 H 0.079 0.921 15 C -0.143 4.143 16 C -0.148 4.148 17 C -0.151 4.151 18 C -0.143 4.143 19 C -0.103 4.103 20 H 0.067 0.933 21 C -0.125 4.125 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.005 0.995 25 H 0.139 0.861 26 H 0.144 0.856 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.169 -10.679 -3.820 11.547 hybrid contribution -0.149 0.642 0.666 0.937 sum 2.021 -10.037 -3.154 10.713 Atomic orbital electron populations 1.70008 1.06408 1.25627 1.52999 1.25293 0.95264 1.00639 0.95788 0.85943 0.79301 0.82150 0.76627 1.20108 1.21694 1.21704 1.21102 0.92002 0.91429 1.46184 0.94796 1.19171 0.91578 0.92225 0.90454 1.21681 0.94945 0.95198 0.92444 1.58464 1.18602 1.53175 1.06234 1.21987 0.98842 0.96060 0.96688 1.21589 0.97842 0.95977 0.95034 0.92142 1.21380 0.97014 0.98479 0.97395 1.21535 0.99007 0.97605 0.96671 1.21541 0.97504 0.98157 0.97867 1.21402 0.97646 0.97711 0.97578 1.21733 0.97683 0.95406 0.95497 0.93286 1.21987 0.95898 0.97350 0.97252 0.94075 0.92256 0.99526 0.86065 0.85647 0.93564 0.93955 0.92980 0.91400 0.90736 0.91828 0.90754 0.92839 0.92050 0.92868 0.95755 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.82 9.98 21.45 0.21 -51.61 16 2 C 0.03 1.53 4.98 84.65 0.42 1.95 16 3 Si 0.93 45.56 29.54 68.60 2.03 47.59 16 4 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 7 C -0.47 -25.38 7.51 25.60 0.19 -25.19 16 8 H 0.03 1.90 7.36 -2.91 -0.02 1.88 16 9 C 0.07 3.14 0.42 -51.48 -0.02 3.12 16 10 C 0.09 4.10 5.19 86.30 0.45 4.55 16 11 N -0.84 -34.96 9.07 -186.72 -1.69 -36.65 16 12 C -0.10 -3.93 5.41 31.08 0.17 -3.76 16 13 C -0.09 -2.95 2.24 -10.64 -0.02 -2.98 16 14 H 0.06 2.02 7.97 -2.39 -0.02 2.00 16 15 C -0.11 -2.95 5.65 30.39 0.17 -2.78 16 16 C -0.11 -2.57 5.86 30.76 0.18 -2.39 16 17 C -0.11 -2.82 5.85 30.75 0.18 -2.64 16 18 C -0.11 -3.27 5.66 30.44 0.17 -3.10 16 19 C -0.08 -3.23 2.36 -10.33 -0.02 -3.26 16 20 H 0.05 2.07 8.07 -2.38 -0.02 2.05 16 21 C -0.09 -4.00 5.03 31.48 0.16 -3.84 16 22 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 23 H 0.06 3.18 6.34 -2.38 -0.02 3.16 16 24 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 25 H 0.33 12.05 9.08 -89.70 -0.81 11.24 16 26 H 0.33 12.41 7.66 -89.70 -0.69 11.72 16 27 H 0.05 1.71 6.74 -2.39 -0.02 1.69 16 28 H 0.04 1.78 7.35 -2.39 -0.02 1.76 16 29 H 0.05 1.56 8.08 -2.38 -0.02 1.54 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 1.82 8.02 -2.39 -0.02 1.80 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 37 H 0.02 1.10 7.89 -2.39 -0.02 1.08 16 38 H 0.04 2.39 6.45 -2.38 -0.02 2.38 16 Total: -1.00 -58.81 282.39 2.10 -56.71 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: -0.47 Total: 24.26 kcal Atomic # 6 Polarization: -42.32 SS G_CDS: 2.02 Total: -40.30 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -1.48 Total: -88.26 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -58.81 2.10 -56.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260935208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.716 kcal (2) G-P(sol) polarization free energy of solvation -58.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds