Wall clock time and date at job start Mon Mar 30 2020 03:11:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86794 * 120.00084 * 2 1
4 4 H 1.48501 * 109.47110 * 179.97438 * 3 2 1
5 5 H 1.48502 * 109.47100 * 299.99920 * 3 2 1
6 6 H 1.48507 * 109.47397 * 59.99999 * 3 2 1
7 7 C 1.37876 * 119.99747 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99535 * 172.70880 * 7 2 1
9 9 C 1.50703 * 120.00329 * 352.71297 * 7 2 1
10 10 C 1.52994 * 110.09742 * 302.42738 * 9 7 2
11 11 N 1.46898 * 109.47734 * 303.92329 * 10 9 7
12 12 C 1.54911 * 110.07515 * 180.90342 * 9 7 2
13 13 C 1.52500 * 105.32290 * 237.31684 * 12 9 7
14 14 H 1.09000 * 109.76410 * 272.21502 * 13 12 9
15 15 C 1.51616 * 116.56618 * 146.67580 * 13 12 9
16 16 C 1.53755 * 107.33357 * 180.27973 * 15 13 12
17 17 C 1.52731 * 111.36313 * 57.45095 * 16 15 13
18 18 C 1.53733 * 111.53774 * 305.26533 * 17 16 15
19 19 C 1.51780 * 107.25226 * 57.81432 * 18 17 16
20 20 H 1.09006 * 110.98364 * 56.07001 * 19 18 17
21 21 C 1.53274 * 115.79280 * 182.95021 * 19 18 17
22 22 H 0.96995 * 119.99987 * 0.02562 * 1 2 3
23 23 H 1.09006 * 109.47198 * 63.92594 * 10 9 7
24 24 H 1.09001 * 109.47329 * 183.92169 * 10 9 7
25 25 H 1.00895 * 111.00391 * 174.02186 * 11 10 9
26 26 H 1.00896 * 110.99714 * 297.98016 * 11 10 9
27 27 H 1.08997 * 110.27308 * 118.35155 * 12 9 7
28 28 H 1.09002 * 110.27130 * 356.28146 * 12 9 7
29 29 H 1.09008 * 109.89491 * 299.75814 * 15 13 12
30 30 H 1.08998 * 109.89724 * 60.79500 * 15 13 12
31 31 H 1.09000 * 109.08421 * 178.03666 * 16 15 13
32 32 H 1.09005 * 109.08687 * 297.01916 * 16 15 13
33 33 H 1.09000 * 109.05538 * 184.73283 * 17 16 15
34 34 H 1.09001 * 108.99897 * 65.76301 * 17 16 15
35 35 H 1.08998 * 109.90032 * 298.37785 * 18 17 16
36 36 H 1.09002 * 109.96430 * 177.28758 * 18 17 16
37 37 H 1.09001 * 110.71742 * 38.79095 * 21 19 18
38 38 H 1.09006 * 110.71955 * 275.51550 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8905 2.3965 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0780 -1.1979 -0.1182
9 6 1.2601 -2.4939 0.1667
10 6 0.4692 -2.4830 1.4762
11 7 1.3806 -2.2154 2.5967
12 6 2.2549 -3.6814 0.1561
13 6 1.7904 -4.5860 -0.9805
14 1 1.0456 -5.2903 -0.6101
15 6 2.8711 -5.3334 -1.7370
16 6 2.1754 -6.1653 -2.8269
17 6 1.3440 -5.2822 -3.7551
18 6 0.3360 -4.4285 -2.9687
19 6 1.1281 -3.5964 -1.9767
20 1 1.8868 -3.0011 -2.4847
21 6 0.3004 -2.7157 -1.0341
22 1 -0.4850 0.8400 -0.0004
23 1 -0.2930 -1.7049 1.4339
24 1 -0.0087 -3.4521 1.6201
25 1 0.8700 -2.1065 3.4601
26 1 2.0771 -2.9409 2.6775
27 1 2.2147 -4.2162 1.1050
28 1 3.2670 -3.3245 -0.0346
29 1 3.5611 -4.6246 -2.1951
30 1 3.4125 -5.9912 -1.0571
31 1 2.9311 -6.6889 -3.4124
32 1 1.5222 -6.8983 -2.3533
33 1 0.8026 -5.9153 -4.4581
34 1 2.0117 -4.6237 -4.3106
35 1 -0.3622 -5.0747 -2.4368
36 1 -0.2091 -3.7747 -3.6496
37 1 -0.6030 -3.2354 -0.7148
38 1 0.0530 -1.7671 -1.5105
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260935208.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:11:39
Heat of formation + Delta-G solvation = -44.994389 kcal
Electronic energy + Delta-G solvation = -16541.619522 eV
Core-core repulsion = 14188.555264 eV
Total energy + Delta-G solvation = -2353.064258 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.75763 -37.26304 -33.87996 -33.71784 -32.22916 -29.56868 -27.66627 -26.49150
-24.83651 -22.27971 -21.58548 -20.78125 -19.90047 -17.81805 -16.73374 -16.43088
-15.58667 -15.50064 -15.23325 -15.00501 -14.68862 -14.16139 -13.84257 -13.53366
-13.22948 -12.85503 -12.79801 -12.64649 -12.42384 -12.26818 -12.15065 -11.70977
-11.41867 -11.26223 -11.12744 -10.92980 -10.69553 -10.63222 -10.41586 -10.10563
-9.05804 -7.87681 -5.91169 1.41934 1.46457 1.54294 2.56244 3.40508
3.79665 3.90665 4.03713 4.19248 4.33784 4.47401 4.54630 4.63345
4.73073 4.77112 4.81680 4.87651 4.93836 5.02149 5.10056 5.19988
5.21563 5.31436 5.32547 5.41365 5.44569 5.51050 5.53736 5.64764
5.74461 5.84851 5.91186 6.04355 6.26607 6.57592 6.79908 7.02291
7.11477 7.70861 9.15452
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.031516 B = 0.009587 C = 0.008724
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 888.235095 B = 2919.983110 C = 3208.919596
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.909 5.909
2 C 0.028 3.972
3 Si 0.931 3.069
4 H -0.276 1.276
5 H -0.290 1.290
6 H -0.290 1.290
7 C -0.469 4.469
8 H 0.034 0.966
9 C 0.066 3.934
10 C 0.088 3.912
11 N -0.836 5.836
12 C -0.098 4.098
13 C -0.086 4.086
14 H 0.060 0.940
15 C -0.105 4.105
16 C -0.111 4.111
17 C -0.113 4.113
18 C -0.106 4.106
19 C -0.085 4.085
20 H 0.049 0.951
21 C -0.086 4.086
22 H 0.250 0.750
23 H 0.059 0.941
24 H -0.013 1.013
25 H 0.328 0.672
26 H 0.331 0.669
27 H 0.046 0.954
28 H 0.042 0.958
29 H 0.051 0.949
30 H 0.067 0.933
31 H 0.074 0.926
32 H 0.063 0.937
33 H 0.074 0.926
34 H 0.053 0.947
35 H 0.061 0.939
36 H 0.053 0.947
37 H 0.024 0.976
38 H 0.044 0.956
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.106 -11.464 -3.412 12.144
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.550 5.550
2 C -0.170 4.170
3 Si 0.760 3.240
4 H -0.201 1.201
5 H -0.217 1.217
6 H -0.217 1.217
7 C -0.507 4.507
8 H 0.052 0.948
9 C 0.066 3.934
10 C -0.043 4.043
11 N -0.365 5.365
12 C -0.136 4.136
13 C -0.104 4.104
14 H 0.079 0.921
15 C -0.143 4.143
16 C -0.148 4.148
17 C -0.151 4.151
18 C -0.143 4.143
19 C -0.103 4.103
20 H 0.067 0.933
21 C -0.125 4.125
22 H 0.059 0.941
23 H 0.077 0.923
24 H 0.005 0.995
25 H 0.139 0.861
26 H 0.144 0.856
27 H 0.064 0.936
28 H 0.060 0.940
29 H 0.070 0.930
30 H 0.086 0.914
31 H 0.093 0.907
32 H 0.082 0.918
33 H 0.092 0.908
34 H 0.072 0.928
35 H 0.080 0.920
36 H 0.071 0.929
37 H 0.042 0.958
38 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 2.169 -10.679 -3.820 11.547
hybrid contribution -0.149 0.642 0.666 0.937
sum 2.021 -10.037 -3.154 10.713
Atomic orbital electron populations
1.70008 1.06408 1.25627 1.52999 1.25293 0.95264 1.00639 0.95788
0.85943 0.79301 0.82150 0.76627 1.20108 1.21694 1.21704 1.21102
0.92002 0.91429 1.46184 0.94796 1.19171 0.91578 0.92225 0.90454
1.21681 0.94945 0.95198 0.92444 1.58464 1.18602 1.53175 1.06234
1.21987 0.98842 0.96060 0.96688 1.21589 0.97842 0.95977 0.95034
0.92142 1.21380 0.97014 0.98479 0.97395 1.21535 0.99007 0.97605
0.96671 1.21541 0.97504 0.98157 0.97867 1.21402 0.97646 0.97711
0.97578 1.21733 0.97683 0.95406 0.95497 0.93286 1.21987 0.95898
0.97350 0.97252 0.94075 0.92256 0.99526 0.86065 0.85647 0.93564
0.93955 0.92980 0.91400 0.90736 0.91828 0.90754 0.92839 0.92050
0.92868 0.95755 0.93721
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -51.82 9.98 21.45 0.21 -51.61 16
2 C 0.03 1.53 4.98 84.65 0.42 1.95 16
3 Si 0.93 45.56 29.54 68.60 2.03 47.59 16
4 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16
5 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16
6 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16
7 C -0.47 -25.38 7.51 25.60 0.19 -25.19 16
8 H 0.03 1.90 7.36 -2.91 -0.02 1.88 16
9 C 0.07 3.14 0.42 -51.48 -0.02 3.12 16
10 C 0.09 4.10 5.19 86.30 0.45 4.55 16
11 N -0.84 -34.96 9.07 -186.72 -1.69 -36.65 16
12 C -0.10 -3.93 5.41 31.08 0.17 -3.76 16
13 C -0.09 -2.95 2.24 -10.64 -0.02 -2.98 16
14 H 0.06 2.02 7.97 -2.39 -0.02 2.00 16
15 C -0.11 -2.95 5.65 30.39 0.17 -2.78 16
16 C -0.11 -2.57 5.86 30.76 0.18 -2.39 16
17 C -0.11 -2.82 5.85 30.75 0.18 -2.64 16
18 C -0.11 -3.27 5.66 30.44 0.17 -3.10 16
19 C -0.08 -3.23 2.36 -10.33 -0.02 -3.26 16
20 H 0.05 2.07 8.07 -2.38 -0.02 2.05 16
21 C -0.09 -4.00 5.03 31.48 0.16 -3.84 16
22 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16
23 H 0.06 3.18 6.34 -2.38 -0.02 3.16 16
24 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16
25 H 0.33 12.05 9.08 -89.70 -0.81 11.24 16
26 H 0.33 12.41 7.66 -89.70 -0.69 11.72 16
27 H 0.05 1.71 6.74 -2.39 -0.02 1.69 16
28 H 0.04 1.78 7.35 -2.39 -0.02 1.76 16
29 H 0.05 1.56 8.08 -2.38 -0.02 1.54 16
30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16
31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16
32 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16
33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16
34 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16
35 H 0.06 1.82 8.02 -2.39 -0.02 1.80 16
36 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16
37 H 0.02 1.10 7.89 -2.39 -0.02 1.08 16
38 H 0.04 2.39 6.45 -2.38 -0.02 2.38 16
Total: -1.00 -58.81 282.39 2.10 -56.71
By element:
Atomic # 1 Polarization: 24.73 SS G_CDS: -0.47 Total: 24.26 kcal
Atomic # 6 Polarization: -42.32 SS G_CDS: 2.02 Total: -40.30 kcal
Atomic # 7 Polarization: -86.79 SS G_CDS: -1.48 Total: -88.26 kcal
Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal
Total: -58.81 2.10 -56.71 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260935208.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.716 kcal
(2) G-P(sol) polarization free energy of solvation -58.813 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.097 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.710 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.994 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds