Wall clock time and date at job start Mon Mar 30 2020 02:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00276 * 2 1 4 4 H 1.48505 * 109.46960 * 270.00264 * 3 2 1 5 5 H 1.48500 * 109.46886 * 29.99591 * 3 2 1 6 6 H 1.48494 * 109.47438 * 149.99828 * 3 2 1 7 7 C 1.37881 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99493 * 201.00367 * 7 2 1 9 9 C 1.50699 * 119.99948 * 21.00446 * 7 2 1 10 10 C 1.52996 * 110.10815 * 36.91744 * 9 7 2 11 11 N 1.46902 * 109.47348 * 63.94371 * 10 9 7 12 12 C 1.54438 * 110.08010 * 158.46142 * 9 7 2 13 13 C 1.54945 * 104.21243 * 95.68781 * 12 9 7 14 14 C 1.55037 * 102.83228 * 37.59695 * 13 12 9 15 15 C 1.53241 * 110.07851 * 275.37734 * 9 7 2 16 16 C 1.53635 * 110.60105 * 120.56105 * 15 9 7 17 17 C 1.55033 * 104.03640 * 215.87272 * 16 15 9 18 18 C 1.54940 * 102.83572 * 37.38676 * 17 16 15 19 19 C 1.53245 * 110.80421 * 1.74273 * 15 9 7 20 20 H 0.96997 * 119.99875 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.46884 * 183.93874 * 10 9 7 22 22 H 1.08999 * 109.47435 * 303.93814 * 10 9 7 23 23 H 1.00901 * 110.99852 * 65.95148 * 11 10 9 24 24 H 1.00896 * 111.00398 * 189.91288 * 11 10 9 25 25 H 1.08993 * 110.48311 * 214.37260 * 12 9 7 26 26 H 1.09006 * 110.48360 * 337.00735 * 12 9 7 27 27 H 1.09009 * 110.74014 * 279.26386 * 13 12 9 28 28 H 1.09002 * 110.90098 * 156.00668 * 13 12 9 29 29 H 1.09001 * 110.51810 * 203.97187 * 14 13 12 30 30 H 1.08997 * 110.63108 * 81.29986 * 14 13 12 31 31 H 1.09000 * 110.50907 * 334.51064 * 16 15 9 32 32 H 1.08998 * 110.51682 * 97.23044 * 16 15 9 33 33 H 1.08998 * 110.74154 * 279.04788 * 17 16 15 34 34 H 1.09004 * 110.73656 * 155.72102 * 17 16 15 35 35 H 1.08998 * 110.48595 * 203.72191 * 18 17 16 36 36 H 1.09001 * 110.48668 * 81.08537 * 18 17 16 37 37 H 1.08999 * 110.07979 * 239.83434 * 19 15 9 38 38 H 1.08995 * 110.08146 * 1.39711 * 19 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0307 -1.2250 0.3358 9 6 1.3261 -2.4560 -0.4667 10 6 0.3955 -2.1488 -1.6416 11 7 1.1883 -1.6715 -2.7825 12 6 2.3823 -3.5018 -0.8862 13 6 2.5617 -4.3873 0.3726 14 6 1.1207 -4.4793 0.9371 15 6 0.5315 -3.0831 0.6838 16 6 -0.9569 -3.1892 0.3181 17 6 -1.6930 -2.9152 1.6547 18 6 -0.8169 -1.8193 2.3118 19 6 0.6292 -2.2202 1.9465 20 1 -0.4850 0.8400 0.0004 21 1 -0.1417 -3.0537 -1.9258 22 1 -0.3186 -1.3794 -1.3480 23 1 1.7898 -2.4008 -3.1352 24 1 0.5917 -1.3105 -3.5117 25 1 2.0178 -4.0976 -1.7229 26 1 3.3213 -3.0127 -1.1455 27 1 3.2275 -3.9077 1.0902 28 1 2.9345 -5.3754 0.1030 29 1 1.1419 -4.6970 2.0050 30 1 0.5474 -5.2382 0.4048 31 1 -1.2220 -2.4373 -0.4252 32 1 -1.1899 -4.1889 -0.0485 33 1 -1.7171 -3.8125 2.2731 34 1 -2.7015 -2.5445 1.4709 35 1 -0.9515 -1.8209 3.3935 36 1 -1.0571 -0.8399 1.8981 37 1 1.0747 -2.7946 2.7587 38 1 1.2252 -1.3299 1.7462 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260940321.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:39 Heat of formation + Delta-G solvation = -12.835969 kcal Electronic energy + Delta-G solvation = -17332.765656 eV Core-core repulsion = 14981.095892 eV Total energy + Delta-G solvation = -2351.669764 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.98907 -36.13855 -34.86984 -33.67636 -29.83833 -29.50175 -28.96860 -26.12484 -24.32926 -22.99774 -21.10898 -20.62180 -19.05364 -17.34564 -16.54995 -16.51433 -15.91111 -15.67724 -15.40984 -14.82397 -14.35922 -13.92105 -13.72546 -13.19950 -13.07228 -12.77662 -12.62481 -12.35647 -12.04210 -11.87896 -11.60012 -11.51961 -11.37065 -11.20491 -10.93534 -10.77276 -10.49263 -10.48102 -10.28892 -9.74449 -8.93723 -7.78762 -5.68341 1.48675 1.54708 1.58715 2.63623 3.41794 4.07152 4.09209 4.13694 4.36598 4.46794 4.55096 4.58776 4.91786 4.94532 5.03174 5.04828 5.11988 5.14779 5.16825 5.22750 5.25330 5.36501 5.39922 5.48953 5.55996 5.61483 5.63546 5.82658 5.95122 6.00046 6.06686 6.12366 6.38656 6.53693 6.69855 6.90603 7.10997 7.21315 7.79939 9.17675 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023856 B = 0.015478 C = 0.012734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.445061 B = 1808.560765 C = 2198.225956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.059 3.941 3 Si 0.908 3.092 4 H -0.291 1.291 5 H -0.296 1.296 6 H -0.286 1.286 7 C -0.472 4.472 8 H 0.028 0.972 9 C 0.077 3.923 10 C 0.070 3.930 11 N -0.841 5.841 12 C -0.108 4.108 13 C -0.115 4.115 14 C -0.110 4.110 15 C -0.044 4.044 16 C -0.110 4.110 17 C -0.112 4.112 18 C -0.113 4.113 19 C -0.108 4.108 20 H 0.250 0.750 21 H -0.019 1.019 22 H 0.105 0.895 23 H 0.325 0.675 24 H 0.325 0.675 25 H 0.044 0.956 26 H 0.041 0.959 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.038 0.962 36 H 0.063 0.937 37 H 0.020 0.980 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.435 -6.745 -0.016 6.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.141 4.141 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.223 1.223 6 H -0.212 1.212 7 C -0.510 4.510 8 H 0.046 0.954 9 C 0.076 3.924 10 C -0.060 4.060 11 N -0.369 5.369 12 C -0.146 4.146 13 C -0.152 4.152 14 C -0.148 4.148 15 C -0.045 4.045 16 C -0.148 4.148 17 C -0.149 4.149 18 C -0.150 4.150 19 C -0.145 4.145 20 H 0.060 0.940 21 H -0.001 1.001 22 H 0.122 0.878 23 H 0.136 0.864 24 H 0.136 0.864 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.277 -6.090 0.519 6.244 hybrid contribution 0.092 0.484 -0.605 0.780 sum -1.185 -5.607 -0.086 5.731 Atomic orbital electron populations 1.69916 1.05682 1.25221 1.49756 1.24880 0.94860 0.98986 0.95422 0.86396 0.79319 0.83446 0.76973 1.21834 1.22335 1.21211 1.20647 0.96431 0.93026 1.40923 0.95363 1.18762 0.90988 0.91796 0.90854 1.22260 0.96384 0.96790 0.90519 1.58541 1.26161 1.41185 1.11028 1.22422 0.99245 0.96754 0.96204 1.22400 0.96745 0.98683 0.97393 1.22515 0.95935 0.96834 0.99493 1.21241 0.93928 0.92852 0.96451 1.22570 0.95522 0.99219 0.97447 1.22402 0.97686 0.97922 0.96932 1.22322 0.96174 0.99534 0.97013 1.22414 0.96676 1.01243 0.94125 0.93989 1.00063 0.87787 0.86357 0.86419 0.93736 0.93993 0.93268 0.91417 0.92736 0.92249 0.91382 0.93663 0.92344 0.93028 0.94307 0.91828 0.96152 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.56 8.21 21.45 0.18 -43.38 16 2 C 0.06 2.98 3.86 84.66 0.33 3.30 16 3 Si 0.91 43.17 29.59 68.60 2.03 45.20 16 4 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.47 -23.80 5.36 25.60 0.14 -23.66 16 8 H 0.03 1.51 7.88 -2.91 -0.02 1.49 16 9 C 0.08 3.38 0.45 -52.36 -0.02 3.36 16 10 C 0.07 3.06 3.69 86.30 0.32 3.38 16 11 N -0.84 -34.06 9.19 -186.72 -1.72 -35.77 16 12 C -0.11 -4.29 5.02 31.75 0.16 -4.13 16 13 C -0.11 -4.07 6.91 31.96 0.22 -3.85 16 14 C -0.11 -3.95 5.90 31.51 0.19 -3.77 16 15 C -0.04 -1.79 0.73 -51.59 -0.04 -1.83 16 16 C -0.11 -4.33 4.84 31.50 0.15 -4.18 16 17 C -0.11 -4.09 6.91 31.95 0.22 -3.87 16 18 C -0.11 -4.61 6.60 31.75 0.21 -4.40 16 19 C -0.11 -4.72 5.18 31.17 0.16 -4.56 16 20 H 0.25 12.55 8.31 -92.71 -0.77 11.78 16 21 H -0.02 -0.78 7.17 -2.39 -0.02 -0.80 16 22 H 0.10 5.09 4.00 -2.39 -0.01 5.08 16 23 H 0.32 11.90 7.93 -89.69 -0.71 11.19 16 24 H 0.32 11.86 9.08 -89.70 -0.81 11.05 16 25 H 0.04 1.63 7.52 -2.39 -0.02 1.61 16 26 H 0.04 1.74 7.83 -2.38 -0.02 1.73 16 27 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 1.87 7.35 -2.39 -0.02 1.85 16 30 H 0.06 1.96 7.41 -2.39 -0.02 1.94 16 31 H 0.07 2.97 4.90 -2.39 -0.01 2.96 16 32 H 0.04 1.62 7.38 -2.39 -0.02 1.60 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 34 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 2.90 6.49 -2.39 -0.02 2.88 16 37 H 0.02 0.83 7.25 -2.39 -0.02 0.82 16 38 H 0.09 4.59 4.08 -2.39 -0.01 4.58 16 Total: -1.00 -51.43 269.05 2.06 -49.37 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -0.47 Total: 28.78 kcal Atomic # 6 Polarization: -46.23 SS G_CDS: 2.03 Total: -44.20 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -1.54 Total: -79.15 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -51.43 2.06 -49.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260940321.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.537 kcal (2) G-P(sol) polarization free energy of solvation -51.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds