Wall clock time and date at job start Mon Mar 30 2020 02:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99573 * 2 1 4 4 H 1.48505 * 109.47069 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47140 * 299.99556 * 3 2 1 6 6 H 1.48504 * 109.47133 * 60.00072 * 3 2 1 7 7 C 1.37874 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00086 * 184.62723 * 7 2 1 9 9 C 1.50700 * 119.99992 * 4.62773 * 7 2 1 10 10 C 1.52999 * 110.14825 * 322.64199 * 9 7 2 11 11 N 1.46906 * 109.46880 * 306.91954 * 10 9 7 12 12 C 1.54564 * 110.11776 * 201.00424 * 9 7 2 13 13 C 1.54992 * 104.22347 * 264.30953 * 12 9 7 14 14 C 1.55142 * 102.89419 * 322.64987 * 13 12 9 15 15 C 1.52788 * 110.11762 * 84.28197 * 9 7 2 16 16 C 1.53761 * 111.37640 * 240.98461 * 15 9 7 17 17 C 1.54472 * 104.10325 * 156.71882 * 16 15 9 18 18 C 1.53954 * 106.65457 * 337.49568 * 17 16 15 19 19 C 1.53766 * 111.36556 * 356.70724 * 15 9 7 20 20 H 0.96998 * 120.00301 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.46940 * 66.92027 * 10 9 7 22 22 H 1.08994 * 109.47320 * 186.92271 * 10 9 7 23 23 H 1.00901 * 110.99909 * 174.97039 * 11 10 9 24 24 H 1.00899 * 111.00491 * 298.92843 * 11 10 9 25 25 H 1.09000 * 110.48187 * 145.62297 * 12 9 7 26 26 H 1.08997 * 110.48344 * 22.99212 * 12 9 7 27 27 H 1.09001 * 110.72467 * 204.29892 * 13 12 9 28 28 H 1.09000 * 110.88671 * 81.07439 * 13 12 9 29 29 H 1.09007 * 110.54195 * 278.38277 * 14 13 12 30 30 H 1.09000 * 110.66331 * 155.65994 * 14 13 12 31 31 H 1.08998 * 110.50424 * 38.06244 * 16 15 9 32 32 H 1.09000 * 110.50666 * 275.37409 * 16 15 9 33 33 H 1.09002 * 110.01768 * 218.19355 * 17 16 15 34 34 H 1.08998 * 110.02145 * 96.79958 * 17 16 15 35 35 H 1.08993 * 110.01804 * 119.30038 * 18 17 16 36 36 H 1.09002 * 110.01680 * 240.64843 * 18 17 16 37 37 H 1.09009 * 110.49662 * 84.61839 * 19 15 9 38 38 H 1.08998 * 110.50522 * 321.93573 * 19 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0820 -1.1955 0.0760 9 6 1.2548 -2.4970 -0.1042 10 6 -0.0555 -2.4158 0.6816 11 7 0.2242 -1.9788 2.0561 12 6 2.1254 -3.6560 0.4324 13 6 2.7911 -4.2504 -0.8348 14 6 1.6659 -4.1472 -1.8978 15 6 0.9695 -2.8229 -1.5694 16 6 -0.5416 -2.9088 -1.8405 17 6 -0.6683 -2.6366 -3.3557 18 6 0.5983 -1.8673 -3.7732 19 6 1.4532 -1.6969 -2.4982 20 1 -0.4850 0.8400 -0.0004 21 1 -0.7232 -1.7003 0.2017 22 1 -0.5286 -3.3975 0.7017 23 1 -0.6315 -1.8384 2.5720 24 1 0.8277 -2.6351 2.5285 25 1 1.5036 -4.4045 0.9233 26 1 2.8826 -3.2778 1.1192 27 1 3.0727 -5.2906 -0.6707 28 1 3.6578 -3.6599 -1.1318 29 1 0.9695 -4.9801 -1.7999 30 1 2.0874 -4.1187 -2.9026 31 1 -1.0756 -2.1488 -1.2701 32 1 -0.9170 -3.9031 -1.5985 33 1 -1.5540 -2.0328 -3.5536 34 1 -0.7292 -3.5788 -3.9003 35 1 1.1514 -2.4365 -4.5202 36 1 0.3265 -0.8909 -4.1744 37 1 2.5115 -1.8205 -2.7287 38 1 1.2718 -0.7229 -2.0439 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260940324.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:42 Heat of formation + Delta-G solvation = -1.893124 kcal Electronic energy + Delta-G solvation = -17268.354601 eV Core-core repulsion = 14917.159354 eV Total energy + Delta-G solvation = -2351.195247 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.34953 -34.70844 -33.07605 -31.50726 -28.21847 -27.87160 -27.38417 -24.27612 -22.77654 -21.52789 -19.55177 -18.70341 -17.24866 -15.75122 -14.90380 -14.75123 -14.34597 -13.96260 -13.49292 -13.11654 -12.70697 -12.44404 -11.85049 -11.50956 -11.40100 -11.35340 -10.74793 -10.46999 -10.34784 -10.19226 -10.15005 -9.94606 -9.89711 -9.49295 -9.30182 -9.25630 -8.97089 -8.76768 -8.37083 -7.99833 -6.98791 -5.55624 -3.72501 3.41093 3.50211 3.53455 4.60308 5.45186 5.55162 5.61996 5.69899 5.87713 5.94445 5.98155 6.17586 6.45970 6.47395 6.49073 6.54000 6.64678 6.66244 6.71559 6.72950 6.82387 6.85383 6.91642 7.01940 7.06421 7.16404 7.33253 7.41994 7.49556 7.56964 7.72823 7.91185 8.06565 8.43093 8.60552 8.82867 9.00133 9.23298 9.87389 11.28643 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023275 B = 0.015152 C = 0.012763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.738511 B = 1847.491101 C = 2193.340334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.085 3.915 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.472 4.472 8 H 0.046 0.954 9 C 0.081 3.919 10 C 0.075 3.925 11 N -0.811 5.811 12 C -0.115 4.115 13 C -0.119 4.119 14 C -0.109 4.109 15 C -0.043 4.043 16 C -0.117 4.117 17 C -0.119 4.119 18 C -0.128 4.128 19 C -0.091 4.091 20 H 0.249 0.751 21 H 0.138 0.862 22 H -0.045 1.045 23 H 0.309 0.691 24 H 0.306 0.694 25 H 0.032 0.968 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.039 0.961 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.046 0.954 37 H 0.040 0.960 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.441 -5.380 -2.895 6.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.115 4.115 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.510 4.510 8 H 0.065 0.935 9 C 0.081 3.919 10 C -0.055 4.055 11 N -0.336 5.336 12 C -0.153 4.153 13 C -0.156 4.156 14 C -0.147 4.147 15 C -0.044 4.044 16 C -0.154 4.154 17 C -0.156 4.156 18 C -0.166 4.166 19 C -0.129 4.129 20 H 0.060 0.940 21 H 0.155 0.845 22 H -0.027 1.027 23 H 0.119 0.881 24 H 0.116 0.884 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.255 -4.590 -3.255 5.633 hybrid contribution 0.051 -0.125 0.245 0.280 sum -0.204 -4.716 -3.010 5.599 Atomic orbital electron populations 1.69686 1.05460 1.24269 1.51673 1.24627 0.94467 0.97848 0.94559 0.86807 0.80257 0.85249 0.77125 1.20307 1.21594 1.21444 1.20690 0.92068 0.89610 1.48634 0.93534 1.18624 0.92097 0.92451 0.88764 1.22633 0.99753 0.94135 0.88961 1.58464 1.18110 1.53297 1.03681 1.22610 0.98845 0.97798 0.96016 1.22448 0.98043 0.98136 0.97011 1.22286 0.97110 0.97819 0.97474 1.21370 0.92530 0.92377 0.98116 1.22571 0.98135 1.00249 0.94438 1.22135 0.97451 0.98325 0.97727 1.22276 0.96744 0.98460 0.99084 1.22329 0.96148 1.02276 0.92113 0.93998 0.84514 1.02693 0.88111 0.88366 0.94901 0.92771 0.94141 0.92234 0.93495 0.93365 0.89010 0.94257 0.93398 0.93884 0.94048 0.93491 0.94093 0.87902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.52 9.50 55.43 0.53 -21.99 16 2 C 0.09 2.19 3.18 -17.82 -0.06 2.14 16 3 Si 0.88 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.47 -12.00 5.86 -34.44 -0.20 -12.21 16 8 H 0.05 1.25 7.79 -52.48 -0.41 0.84 16 9 C 0.08 1.85 0.56 -154.95 -0.09 1.76 16 10 C 0.07 1.72 3.62 -3.82 -0.01 1.70 16 11 N -0.81 -17.90 8.46 -10.37 -0.09 -17.99 16 12 C -0.11 -2.40 5.24 -24.86 -0.13 -2.53 16 13 C -0.12 -2.24 6.92 -24.55 -0.17 -2.41 16 14 C -0.11 -2.08 5.69 -25.50 -0.15 -2.22 16 15 C -0.04 -0.90 0.71 -153.73 -0.11 -1.01 16 16 C -0.12 -2.36 4.63 -25.56 -0.12 -2.48 16 17 C -0.12 -2.16 6.70 -25.46 -0.17 -2.33 16 18 C -0.13 -2.41 6.62 -25.47 -0.17 -2.58 16 19 C -0.09 -1.98 4.62 -25.57 -0.12 -2.10 16 20 H 0.25 6.40 8.31 -40.82 -0.34 6.06 16 21 H 0.14 3.42 3.32 -51.93 -0.17 3.24 16 22 H -0.04 -1.01 7.72 -51.93 -0.40 -1.41 16 23 H 0.31 6.28 9.08 -39.29 -0.36 5.92 16 24 H 0.31 6.34 8.39 -39.29 -0.33 6.01 16 25 H 0.03 0.66 7.76 -51.93 -0.40 0.25 16 26 H 0.05 1.17 7.83 -51.93 -0.41 0.76 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.05 0.85 7.62 -51.92 -0.40 0.46 16 30 H 0.05 0.87 7.74 -51.93 -0.40 0.47 16 31 H 0.09 2.06 5.47 -51.93 -0.28 1.78 16 32 H 0.04 0.75 7.70 -51.93 -0.40 0.35 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.87 8.01 -51.92 -0.42 0.46 16 38 H 0.10 2.52 4.88 -51.93 -0.25 2.27 16 LS Contribution 273.67 15.07 4.12 4.12 Total: -1.00 -25.55 273.67 -8.25 -33.80 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -6.30 Total: 10.28 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -1.49 Total: -24.27 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.44 Total: -39.98 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -25.55 -8.25 -33.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260940324.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.910 kcal (2) G-P(sol) polarization free energy of solvation -25.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds