Wall clock time and date at job start Mon Mar 30 2020 02:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99573 * 2 1 4 4 H 1.48505 * 109.47069 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47140 * 299.99556 * 3 2 1 6 6 H 1.48504 * 109.47133 * 60.00072 * 3 2 1 7 7 C 1.37874 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00086 * 184.62723 * 7 2 1 9 9 C 1.50700 * 119.99992 * 4.62773 * 7 2 1 10 10 C 1.52999 * 110.14825 * 322.64199 * 9 7 2 11 11 N 1.46906 * 109.46880 * 306.91954 * 10 9 7 12 12 C 1.54564 * 110.11776 * 201.00424 * 9 7 2 13 13 C 1.54992 * 104.22347 * 264.30953 * 12 9 7 14 14 C 1.55142 * 102.89419 * 322.64987 * 13 12 9 15 15 C 1.52788 * 110.11762 * 84.28197 * 9 7 2 16 16 C 1.53761 * 111.37640 * 240.98461 * 15 9 7 17 17 C 1.54472 * 104.10325 * 156.71882 * 16 15 9 18 18 C 1.53954 * 106.65457 * 337.49568 * 17 16 15 19 19 C 1.53766 * 111.36556 * 356.70724 * 15 9 7 20 20 H 0.96998 * 120.00301 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.46940 * 66.92027 * 10 9 7 22 22 H 1.08994 * 109.47320 * 186.92271 * 10 9 7 23 23 H 1.00901 * 110.99909 * 174.97039 * 11 10 9 24 24 H 1.00899 * 111.00491 * 298.92843 * 11 10 9 25 25 H 1.09000 * 110.48187 * 145.62297 * 12 9 7 26 26 H 1.08997 * 110.48344 * 22.99212 * 12 9 7 27 27 H 1.09001 * 110.72467 * 204.29892 * 13 12 9 28 28 H 1.09000 * 110.88671 * 81.07439 * 13 12 9 29 29 H 1.09007 * 110.54195 * 278.38277 * 14 13 12 30 30 H 1.09000 * 110.66331 * 155.65994 * 14 13 12 31 31 H 1.08998 * 110.50424 * 38.06244 * 16 15 9 32 32 H 1.09000 * 110.50666 * 275.37409 * 16 15 9 33 33 H 1.09002 * 110.01768 * 218.19355 * 17 16 15 34 34 H 1.08998 * 110.02145 * 96.79958 * 17 16 15 35 35 H 1.08993 * 110.01804 * 119.30038 * 18 17 16 36 36 H 1.09002 * 110.01680 * 240.64843 * 18 17 16 37 37 H 1.09009 * 110.49662 * 84.61839 * 19 15 9 38 38 H 1.08998 * 110.50522 * 321.93573 * 19 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0820 -1.1955 0.0760 9 6 1.2548 -2.4970 -0.1042 10 6 -0.0555 -2.4158 0.6816 11 7 0.2242 -1.9788 2.0561 12 6 2.1254 -3.6560 0.4324 13 6 2.7911 -4.2504 -0.8348 14 6 1.6659 -4.1472 -1.8978 15 6 0.9695 -2.8229 -1.5694 16 6 -0.5416 -2.9088 -1.8405 17 6 -0.6683 -2.6366 -3.3557 18 6 0.5983 -1.8673 -3.7732 19 6 1.4532 -1.6969 -2.4982 20 1 -0.4850 0.8400 -0.0004 21 1 -0.7232 -1.7003 0.2017 22 1 -0.5286 -3.3975 0.7017 23 1 -0.6315 -1.8384 2.5720 24 1 0.8277 -2.6351 2.5285 25 1 1.5036 -4.4045 0.9233 26 1 2.8826 -3.2778 1.1192 27 1 3.0727 -5.2906 -0.6707 28 1 3.6578 -3.6599 -1.1318 29 1 0.9695 -4.9801 -1.7999 30 1 2.0874 -4.1187 -2.9026 31 1 -1.0756 -2.1488 -1.2701 32 1 -0.9170 -3.9031 -1.5985 33 1 -1.5540 -2.0328 -3.5536 34 1 -0.7292 -3.5788 -3.9003 35 1 1.1514 -2.4365 -4.5202 36 1 0.3265 -0.8909 -4.1744 37 1 2.5115 -1.8205 -2.7287 38 1 1.2718 -0.7229 -2.0439 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260940324.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:41 Heat of formation + Delta-G solvation = -15.894821 kcal Electronic energy + Delta-G solvation = -17268.961760 eV Core-core repulsion = 14917.159354 eV Total energy + Delta-G solvation = -2351.802406 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.99868 -36.35770 -34.79118 -33.38689 -29.88966 -29.54714 -28.96784 -26.16045 -24.43512 -23.17023 -21.15647 -20.30251 -19.04310 -17.54501 -16.63692 -16.53142 -16.04699 -15.60667 -15.20941 -14.75427 -14.40062 -14.09599 -13.57641 -13.22614 -13.15081 -13.03579 -12.60349 -12.35017 -11.99452 -11.85384 -11.78831 -11.55250 -11.52005 -11.11466 -10.95666 -10.89654 -10.63892 -10.50108 -10.18674 -9.94405 -8.76124 -7.52186 -5.72612 1.44643 1.51406 1.56313 2.62298 3.52720 4.00482 4.07120 4.10106 4.36238 4.42230 4.45670 4.52008 4.90714 4.93231 4.99971 5.02934 5.06657 5.09539 5.14236 5.16172 5.20589 5.27488 5.35316 5.38984 5.43318 5.58179 5.68118 5.77746 5.81867 5.89882 5.96936 6.03947 6.28231 6.58258 6.72225 7.02814 7.26512 7.32375 7.87285 9.27321 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023275 B = 0.015152 C = 0.012763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.738511 B = 1847.491101 C = 2193.340334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.060 3.940 3 Si 0.910 3.090 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.295 1.295 7 C -0.473 4.473 8 H 0.025 0.975 9 C 0.072 3.928 10 C 0.082 3.918 11 N -0.823 5.823 12 C -0.114 4.114 13 C -0.114 4.114 14 C -0.104 4.104 15 C -0.046 4.046 16 C -0.114 4.114 17 C -0.114 4.114 18 C -0.124 4.124 19 C -0.095 4.095 20 H 0.243 0.757 21 H 0.120 0.880 22 H -0.041 1.041 23 H 0.318 0.682 24 H 0.314 0.686 25 H 0.041 0.959 26 H 0.039 0.961 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.045 0.955 37 H 0.034 0.966 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.529 -6.877 -3.862 7.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.139 4.139 3 Si 0.740 3.260 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.222 1.222 7 C -0.512 4.512 8 H 0.043 0.957 9 C 0.071 3.929 10 C -0.048 4.048 11 N -0.349 5.349 12 C -0.151 4.151 13 C -0.152 4.152 14 C -0.141 4.141 15 C -0.047 4.047 16 C -0.152 4.152 17 C -0.151 4.151 18 C -0.161 4.161 19 C -0.132 4.132 20 H 0.054 0.946 21 H 0.137 0.863 22 H -0.023 1.023 23 H 0.129 0.871 24 H 0.125 0.875 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.341 -6.088 -4.220 7.416 hybrid contribution 0.103 0.368 0.592 0.705 sum -0.238 -5.720 -3.628 6.778 Atomic orbital electron populations 1.69823 1.05617 1.23906 1.52227 1.24923 0.94927 0.99049 0.94955 0.86296 0.79342 0.83797 0.76575 1.20812 1.21557 1.22215 1.20737 0.91074 0.91138 1.48234 0.95710 1.18704 0.91975 0.91902 0.90299 1.22456 0.99529 0.93648 0.89141 1.58420 1.18931 1.53752 1.03776 1.22536 0.98412 0.97399 0.96789 1.22415 0.97567 0.99429 0.95745 1.22241 0.97049 0.96775 0.98046 1.21341 0.93401 0.93375 0.96628 1.22465 0.97159 0.99899 0.95653 1.22102 0.97189 0.99479 0.96349 1.22229 0.96778 0.99014 0.98096 1.22225 0.96397 1.00899 0.93698 0.94599 0.86312 1.02336 0.87134 0.87508 0.94039 0.94239 0.91402 0.93148 0.92112 0.92139 0.91692 0.93222 0.93030 0.91440 0.91894 0.93648 0.94668 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.65 9.50 21.45 0.20 -45.44 16 2 C 0.06 3.14 3.18 84.65 0.27 3.41 16 3 Si 0.91 43.63 29.54 68.60 2.03 45.66 16 4 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 7 C -0.47 -24.23 5.86 25.60 0.15 -24.08 16 8 H 0.02 1.35 7.79 -2.91 -0.02 1.32 16 9 C 0.07 3.22 0.56 -52.47 -0.03 3.19 16 10 C 0.08 3.72 3.62 86.30 0.31 4.04 16 11 N -0.82 -35.98 8.46 -186.72 -1.58 -37.56 16 12 C -0.11 -4.58 5.24 31.81 0.17 -4.41 16 13 C -0.11 -4.02 6.92 32.01 0.22 -3.79 16 14 C -0.10 -3.61 5.69 31.39 0.18 -3.43 16 15 C -0.05 -1.88 0.71 -51.68 -0.04 -1.91 16 16 C -0.11 -4.42 4.63 31.35 0.15 -4.27 16 17 C -0.11 -3.82 6.70 31.42 0.21 -3.61 16 18 C -0.12 -4.37 6.62 31.41 0.21 -4.16 16 19 C -0.09 -4.01 4.62 31.35 0.14 -3.86 16 20 H 0.24 12.66 8.31 -92.71 -0.77 11.89 16 21 H 0.12 5.94 3.32 -2.39 -0.01 5.93 16 22 H -0.04 -1.81 7.72 -2.39 -0.02 -1.82 16 23 H 0.32 12.76 9.08 -89.69 -0.81 11.95 16 24 H 0.31 12.79 8.39 -89.70 -0.75 12.04 16 25 H 0.04 1.57 7.76 -2.39 -0.02 1.56 16 26 H 0.04 1.67 7.83 -2.39 -0.02 1.65 16 27 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.06 1.96 7.62 -2.38 -0.02 1.94 16 30 H 0.06 1.96 7.74 -2.39 -0.02 1.94 16 31 H 0.06 2.88 5.47 -2.39 -0.01 2.86 16 32 H 0.05 1.78 7.70 -2.39 -0.02 1.76 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 37 H 0.03 1.47 8.01 -2.38 -0.02 1.45 16 38 H 0.07 3.43 4.88 -2.39 -0.01 3.42 16 Total: -1.00 -53.18 273.67 2.07 -51.10 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: -0.52 Total: 29.14 kcal Atomic # 6 Polarization: -44.84 SS G_CDS: 1.94 Total: -42.90 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -1.38 Total: -83.00 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -53.18 2.07 -51.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260940324.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.208 kcal (2) G-P(sol) polarization free energy of solvation -53.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds