Wall clock time and date at job start Mon Mar 30 2020 03:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99974 * 2 1 4 4 H 1.48497 * 109.47178 * 239.99821 * 3 2 1 5 5 H 1.48501 * 109.47195 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47220 * 119.99994 * 3 2 1 7 7 C 1.37873 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99926 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00149 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47313 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47166 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.33516 * 54.19690 * 11 10 9 13 13 C 1.54904 * 110.37268 * 176.45596 * 11 10 9 14 14 C 1.55143 * 101.68431 * 155.87912 * 13 11 10 15 15 C 1.54354 * 102.99982 * 324.39260 * 14 13 11 16 16 N 1.47439 * 107.25080 * 22.23089 * 15 14 13 17 17 C 1.46908 * 110.99901 * 123.29102 * 16 15 14 18 18 C 1.52998 * 109.47102 * 69.15637 * 17 16 15 19 19 C 1.52998 * 117.49755 * 243.74438 * 18 17 16 20 20 C 1.52997 * 117.49390 * 175.08673 * 18 17 16 21 21 H 0.97010 * 120.00187 * 359.97438 * 1 2 3 22 22 H 1.09009 * 109.46944 * 60.00206 * 9 7 2 23 23 H 1.09006 * 109.47512 * 300.00343 * 9 7 2 24 24 H 1.09001 * 109.46818 * 60.00514 * 10 9 7 25 25 H 1.08991 * 109.47297 * 300.00147 * 10 9 7 26 26 H 1.09002 * 110.99035 * 273.99093 * 13 11 10 27 27 H 1.08995 * 110.99272 * 37.76982 * 13 11 10 28 28 H 1.09003 * 110.70341 * 82.75307 * 14 13 11 29 29 H 1.09005 * 110.70326 * 205.97631 * 14 13 11 30 30 H 1.09001 * 109.85687 * 262.82973 * 15 14 13 31 31 H 1.09008 * 109.90516 * 141.65771 * 15 14 13 32 32 H 1.09004 * 109.46910 * 189.15893 * 17 16 15 33 33 H 1.08998 * 109.46649 * 309.15579 * 17 16 15 34 34 H 1.09001 * 115.55048 * 29.42245 * 18 17 16 35 35 H 1.09002 * 117.49698 * 0.02562 * 19 18 17 36 36 H 1.08999 * 117.49859 * 145.02631 * 19 18 17 37 37 H 1.09007 * 117.49821 * 214.98069 * 20 18 17 38 38 H 1.08998 * 117.50529 * 359.97301 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 1 0.7734 -5.0159 -0.8303 13 6 2.4658 -6.1788 -0.0910 14 6 1.6316 -7.3247 0.5397 15 6 0.8323 -6.6039 1.6462 16 7 0.7762 -5.1755 1.2851 17 6 -0.6141 -4.7089 1.1977 18 6 -1.2331 -4.6856 2.5966 19 6 -2.4118 -5.6239 2.8633 20 6 -2.6468 -4.1169 2.7340 21 1 -0.4851 0.8401 0.0004 22 1 0.6240 -2.5566 -0.8904 23 1 0.6246 -2.5571 0.8897 24 1 2.8718 -3.6043 0.8895 25 1 2.8719 -3.6043 -0.8904 26 1 2.7148 -6.4023 -1.1284 27 1 3.3665 -5.9853 0.4916 28 1 0.9592 -7.7629 -0.1979 29 1 2.2840 -8.0856 0.9681 30 1 1.3362 -6.7245 2.6052 31 1 -0.1768 -7.0125 1.7012 32 1 -0.6342 -3.7045 0.7746 33 1 -1.1842 -5.3837 0.5592 34 1 -0.5368 -4.5067 3.4160 35 1 -2.7459 -6.2581 2.0421 36 1 -2.4912 -6.0621 3.8581 37 1 -2.8808 -3.5642 3.6440 38 1 -3.1357 -3.7589 1.8280 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260944945.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:06 Heat of formation + Delta-G solvation = 11.197598 kcal Electronic energy + Delta-G solvation = -15757.240211 eV Core-core repulsion = 13406.612620 eV Total energy + Delta-G solvation = -2350.627591 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.08343 -36.68060 -33.59023 -31.45101 -31.37050 -27.74874 -25.72190 -24.24799 -22.14943 -21.52856 -20.63870 -19.66221 -19.21116 -16.30082 -16.12060 -15.42805 -14.47711 -14.39686 -14.04536 -13.65062 -12.98214 -12.50378 -12.37284 -12.30643 -11.86690 -11.35921 -11.25627 -11.15119 -11.01589 -10.86904 -10.80546 -10.65028 -10.39547 -10.22475 -9.97514 -9.67992 -9.47654 -9.02028 -8.85408 -8.22353 -7.78031 -5.90496 -3.91121 3.38762 3.42666 3.45632 4.07932 4.37372 4.53572 4.94408 4.97639 5.09777 5.20757 5.26111 5.42441 5.45265 5.66067 5.71502 5.77435 5.84441 5.89177 5.97292 6.04313 6.12860 6.17701 6.20819 6.32873 6.40982 6.48695 6.49050 6.63736 6.71810 7.00590 7.29804 7.57638 7.63845 7.80144 8.02407 8.12185 8.55995 9.15702 9.71622 11.20641 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023736 B = 0.008055 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.337928 B = 3475.298023 C = 4478.223210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.052 0.948 9 C 0.020 3.980 10 C -0.096 4.096 11 C 0.075 3.925 12 H 0.047 0.953 13 C -0.126 4.126 14 C -0.143 4.143 15 C 0.044 3.956 16 N -0.515 5.515 17 C 0.072 3.928 18 C -0.133 4.133 19 C -0.192 4.192 20 C -0.176 4.176 21 H 0.259 0.741 22 H 0.006 0.994 23 H 0.031 0.969 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.024 0.976 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.498 -13.183 2.878 13.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.070 0.930 9 C -0.016 4.016 10 C -0.134 4.134 11 C -0.033 4.033 12 H 0.065 0.935 13 C -0.164 4.164 14 C -0.182 4.182 15 C -0.084 4.084 16 N -0.239 5.239 17 C -0.056 4.056 18 C -0.151 4.151 19 C -0.229 4.229 20 C -0.213 4.213 21 H 0.068 0.932 22 H 0.025 0.975 23 H 0.049 0.951 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.042 0.958 34 H 0.128 0.872 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.415 -12.764 3.260 13.249 hybrid contribution -0.064 0.483 -0.590 0.765 sum -1.478 -12.281 2.670 12.655 Atomic orbital electron populations 1.69948 1.05936 1.26415 1.51275 1.24989 0.94816 0.99004 0.95579 0.86721 0.79626 0.83475 0.78522 1.20403 1.21400 1.20323 1.21263 0.92937 0.91308 1.49981 0.92990 1.19193 0.94198 0.91172 0.97085 1.21589 0.98680 0.92969 1.00118 1.22719 0.94685 0.96345 0.89554 0.93507 1.22764 0.98698 0.94486 1.00446 1.22790 0.98920 0.98116 0.98355 1.22809 0.98986 0.88337 0.98316 1.63421 1.13976 1.15688 1.30795 1.22110 0.87443 1.02265 0.93733 1.22260 0.90463 1.02991 0.99391 1.23049 1.04673 0.93167 1.02055 1.22906 0.99876 0.95318 1.03223 0.93159 0.97533 0.95072 0.92589 0.93442 0.91458 0.90759 0.92131 0.91419 0.91255 0.93161 0.87696 0.95760 0.87237 0.89536 0.89447 0.88996 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 22.10 29.54 -169.99 -5.02 17.07 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.53 3.97 -27.88 -0.11 0.42 16 10 C -0.10 -2.04 4.86 -26.73 -0.13 -2.17 16 11 C 0.07 1.33 2.54 -66.19 -0.17 1.17 16 12 H 0.05 0.87 7.81 -51.93 -0.41 0.46 16 13 C -0.13 -1.82 6.49 -24.59 -0.16 -1.98 16 14 C -0.14 -1.81 6.95 -24.89 -0.17 -1.98 16 15 C 0.04 0.62 6.41 -2.82 -0.02 0.60 16 16 N -0.51 -8.96 4.69 -223.35 -1.05 -10.01 16 17 C 0.07 1.27 4.42 -3.82 -0.02 1.25 16 18 C -0.13 -2.09 5.26 -90.62 -0.48 -2.57 16 19 C -0.19 -2.49 10.08 -26.70 -0.27 -2.76 16 20 C -0.18 -2.55 10.25 -26.70 -0.27 -2.82 16 21 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.01 0.18 8.14 -51.92 -0.42 -0.25 16 23 H 0.03 0.86 5.91 -51.93 -0.31 0.55 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.68 7.21 -51.92 -0.37 0.30 16 32 H 0.11 2.22 5.23 -51.93 -0.27 1.95 16 33 H 0.02 0.40 7.72 -51.93 -0.40 0.00 16 34 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 35 H 0.09 1.07 8.03 -51.93 -0.42 0.65 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 300.23 15.07 4.52 4.52 Total: -1.00 -29.77 300.23 -9.80 -39.58 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.79 Total: -0.23 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -2.21 Total: -24.55 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.31 Total: -36.40 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.77 -9.80 -39.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260944945.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.774 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds