Wall clock time and date at job start Mon Mar 30 2020 03:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99974 * 2 1 4 4 H 1.48497 * 109.47178 * 239.99821 * 3 2 1 5 5 H 1.48501 * 109.47195 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47220 * 119.99994 * 3 2 1 7 7 C 1.37873 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99926 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00149 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47313 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47166 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.33516 * 54.19690 * 11 10 9 13 13 C 1.54904 * 110.37268 * 176.45596 * 11 10 9 14 14 C 1.55143 * 101.68431 * 155.87912 * 13 11 10 15 15 C 1.54354 * 102.99982 * 324.39260 * 14 13 11 16 16 N 1.47439 * 107.25080 * 22.23089 * 15 14 13 17 17 C 1.46908 * 110.99901 * 123.29102 * 16 15 14 18 18 C 1.52998 * 109.47102 * 69.15637 * 17 16 15 19 19 C 1.52998 * 117.49755 * 243.74438 * 18 17 16 20 20 C 1.52997 * 117.49390 * 175.08673 * 18 17 16 21 21 H 0.97010 * 120.00187 * 359.97438 * 1 2 3 22 22 H 1.09009 * 109.46944 * 60.00206 * 9 7 2 23 23 H 1.09006 * 109.47512 * 300.00343 * 9 7 2 24 24 H 1.09001 * 109.46818 * 60.00514 * 10 9 7 25 25 H 1.08991 * 109.47297 * 300.00147 * 10 9 7 26 26 H 1.09002 * 110.99035 * 273.99093 * 13 11 10 27 27 H 1.08995 * 110.99272 * 37.76982 * 13 11 10 28 28 H 1.09003 * 110.70341 * 82.75307 * 14 13 11 29 29 H 1.09005 * 110.70326 * 205.97631 * 14 13 11 30 30 H 1.09001 * 109.85687 * 262.82973 * 15 14 13 31 31 H 1.09008 * 109.90516 * 141.65771 * 15 14 13 32 32 H 1.09004 * 109.46910 * 189.15893 * 17 16 15 33 33 H 1.08998 * 109.46649 * 309.15579 * 17 16 15 34 34 H 1.09001 * 115.55048 * 29.42245 * 18 17 16 35 35 H 1.09002 * 117.49698 * 0.02562 * 19 18 17 36 36 H 1.08999 * 117.49859 * 145.02631 * 19 18 17 37 37 H 1.09007 * 117.49821 * 214.98069 * 20 18 17 38 38 H 1.08998 * 117.50529 * 359.97301 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 1 0.7734 -5.0159 -0.8303 13 6 2.4658 -6.1788 -0.0910 14 6 1.6316 -7.3247 0.5397 15 6 0.8323 -6.6039 1.6462 16 7 0.7762 -5.1755 1.2851 17 6 -0.6141 -4.7089 1.1977 18 6 -1.2331 -4.6856 2.5966 19 6 -2.4118 -5.6239 2.8633 20 6 -2.6468 -4.1169 2.7340 21 1 -0.4851 0.8401 0.0004 22 1 0.6240 -2.5566 -0.8904 23 1 0.6246 -2.5571 0.8897 24 1 2.8718 -3.6043 0.8895 25 1 2.8719 -3.6043 -0.8904 26 1 2.7148 -6.4023 -1.1284 27 1 3.3665 -5.9853 0.4916 28 1 0.9592 -7.7629 -0.1979 29 1 2.2840 -8.0856 0.9681 30 1 1.3362 -6.7245 2.6052 31 1 -0.1768 -7.0125 1.7012 32 1 -0.6342 -3.7045 0.7746 33 1 -1.1842 -5.3837 0.5592 34 1 -0.5368 -4.5067 3.4160 35 1 -2.7459 -6.2581 2.0421 36 1 -2.4912 -6.0621 3.8581 37 1 -2.8808 -3.5642 3.6440 38 1 -3.1357 -3.7589 1.8280 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260944945.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:06 Heat of formation + Delta-G solvation = -5.869403 kcal Electronic energy + Delta-G solvation = -15757.980292 eV Core-core repulsion = 13406.612620 eV Total energy + Delta-G solvation = -2351.367672 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.39278 -37.88626 -35.62679 -33.33077 -32.63471 -29.46249 -27.02478 -26.13694 -23.32661 -23.04348 -22.06342 -20.91137 -20.73216 -18.43794 -17.40941 -16.80259 -16.50115 -15.70677 -15.23661 -15.06495 -14.42971 -14.18658 -14.05645 -13.85428 -13.29952 -12.99241 -12.81731 -12.68192 -12.54659 -12.36590 -12.20846 -12.03815 -11.95714 -11.56013 -11.51496 -11.25233 -11.04567 -10.82951 -10.69265 -10.43984 -9.12868 -8.15283 -6.25503 1.38892 1.42256 1.49873 2.42690 2.88093 3.09425 3.16836 3.76882 3.79709 3.95738 4.05999 4.13187 4.23318 4.34353 4.40680 4.55814 4.69295 4.72871 4.76467 4.82657 4.87571 4.95725 4.98364 5.03457 5.06241 5.13003 5.25215 5.29493 5.35115 5.38463 5.42344 5.57025 5.84904 5.94446 6.26000 6.32473 6.34085 6.91726 7.42278 8.95489 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023736 B = 0.008055 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.337928 B = 3475.298023 C = 4478.223210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.960 3.040 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.545 4.545 8 H 0.054 0.946 9 C 0.032 3.968 10 C -0.085 4.085 11 C 0.074 3.926 12 H 0.035 0.965 13 C -0.119 4.119 14 C -0.132 4.132 15 C 0.043 3.957 16 N -0.533 5.533 17 C 0.082 3.918 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.187 4.187 21 H 0.261 0.739 22 H -0.023 1.023 23 H 0.009 0.991 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.032 0.968 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.790 -14.629 3.369 15.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.583 4.583 8 H 0.073 0.927 9 C -0.005 4.005 10 C -0.123 4.123 11 C -0.034 4.034 12 H 0.053 0.947 13 C -0.157 4.157 14 C -0.171 4.171 15 C -0.085 4.085 16 N -0.257 5.257 17 C -0.046 4.046 18 C -0.173 4.173 19 C -0.193 4.193 20 C -0.225 4.225 21 H 0.070 0.930 22 H -0.005 1.005 23 H 0.027 0.973 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.128 0.872 37 H 0.118 0.882 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.699 -14.228 3.752 14.731 hybrid contribution -0.319 0.951 -0.734 1.243 sum -1.019 -13.277 3.018 13.654 Atomic orbital electron populations 1.70094 1.07616 1.27503 1.51787 1.25925 0.95769 1.03059 0.94902 0.85579 0.78370 0.78484 0.79073 1.19233 1.20748 1.19395 1.21733 0.93363 0.92848 1.50324 0.92737 1.19018 0.94364 0.92600 0.94546 1.21410 0.97672 0.93370 0.99809 1.22592 0.95188 0.95959 0.89667 0.94736 1.22724 0.97888 0.93334 1.01800 1.22766 0.98827 0.97689 0.97769 1.22878 1.00082 0.86317 0.99199 1.63335 1.13656 1.18357 1.30386 1.21872 0.88222 0.99700 0.94849 1.22146 0.91033 1.06252 0.97855 1.23102 1.00685 0.91949 1.03610 1.22975 0.98876 0.97370 1.03231 0.92987 1.00480 0.97290 0.93302 0.93078 0.89868 0.90668 0.91125 0.88772 0.90645 0.92189 0.92505 0.94982 0.88343 0.88427 0.87156 0.88173 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.04 13.29 21.44 0.28 -57.75 16 2 C 0.00 0.06 5.46 84.65 0.46 0.53 16 3 Si 0.96 45.74 29.54 68.60 2.03 47.77 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.54 -32.43 9.11 25.60 0.23 -32.20 16 8 H 0.05 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.03 1.74 3.97 29.85 0.12 1.86 16 10 C -0.08 -3.72 4.86 30.60 0.15 -3.57 16 11 C 0.07 2.66 2.54 45.39 0.12 2.78 16 12 H 0.03 1.31 7.81 -2.39 -0.02 1.30 16 13 C -0.12 -3.20 6.49 31.98 0.21 -2.99 16 14 C -0.13 -2.91 6.95 31.79 0.22 -2.69 16 15 C 0.04 1.12 6.41 86.66 0.56 1.68 16 16 N -0.53 -18.61 4.69 -860.56 -4.04 -22.65 16 17 C 0.08 2.97 4.42 86.30 0.38 3.35 16 18 C -0.15 -4.89 5.26 -10.80 -0.06 -4.95 16 19 C -0.16 -3.74 10.08 30.62 0.31 -3.44 16 20 C -0.19 -5.43 10.25 30.62 0.31 -5.12 16 21 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 22 H -0.02 -1.39 8.14 -2.38 -0.02 -1.41 16 23 H 0.01 0.53 5.91 -2.38 -0.01 0.51 16 24 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.07 2.01 8.06 -2.39 -0.02 1.99 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.09 1.63 8.14 -2.38 -0.02 1.62 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 1.46 7.21 -2.38 -0.02 1.44 16 32 H 0.06 2.60 5.23 -2.38 -0.01 2.59 16 33 H 0.03 1.08 7.72 -2.39 -0.02 1.06 16 34 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 35 H 0.10 2.15 8.03 -2.39 -0.02 2.13 16 36 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 38 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -66.00 300.23 2.28 -63.73 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.99 Total: 13.67 kcal Atomic # 6 Polarization: -47.77 SS G_CDS: 3.01 Total: -44.76 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -3.75 Total: -80.40 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -66.00 2.28 -63.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260944945.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.859 kcal (2) G-P(sol) polarization free energy of solvation -66.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds