Wall clock time and date at job start Mon Mar 30 2020 03:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99872 * 2 1 4 4 H 1.48504 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47157 * 300.00479 * 3 2 1 6 6 H 1.48498 * 109.46990 * 60.00649 * 3 2 1 7 7 C 1.37878 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99634 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00189 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47337 * 185.06303 * 9 7 2 11 11 H 1.09000 * 109.46075 * 183.35326 * 10 9 7 12 12 C 1.53041 * 109.45195 * 63.37784 * 10 9 7 13 13 C 1.53113 * 109.27566 * 180.81028 * 12 10 9 14 14 C 1.53118 * 109.16296 * 57.65974 * 13 12 10 15 15 C 1.53040 * 109.27586 * 302.34185 * 14 13 12 16 16 N 1.46845 * 109.52263 * 59.17735 * 15 14 13 17 17 C 1.46902 * 111.00131 * 174.16331 * 16 15 14 18 18 C 1.53791 * 113.61378 * 301.91144 * 17 16 15 19 19 C 1.53780 * 87.07924 * 139.98129 * 18 17 16 20 20 C 1.53783 * 87.17469 * 334.52596 * 19 18 17 21 21 H 0.97003 * 120.00508 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47078 * 65.06322 * 9 7 2 23 23 H 1.09000 * 109.46756 * 305.06678 * 9 7 2 24 24 H 1.09005 * 109.49934 * 300.75027 * 12 10 9 25 25 H 1.08998 * 109.50241 * 60.86806 * 12 10 9 26 26 H 1.09006 * 109.52243 * 177.55741 * 13 12 10 27 27 H 1.09000 * 109.52462 * 297.74739 * 13 12 10 28 28 H 1.08996 * 109.51080 * 62.28078 * 14 13 12 29 29 H 1.08996 * 109.50846 * 182.40539 * 14 13 12 30 30 H 1.09004 * 109.46182 * 299.16670 * 15 14 13 31 31 H 1.08995 * 109.46799 * 179.19539 * 15 14 13 32 32 H 1.08999 * 112.91012 * 170.66118 * 17 16 15 33 33 H 1.08998 * 113.60875 * 25.43215 * 18 17 16 34 34 H 1.08999 * 113.61231 * 254.53144 * 18 17 16 35 35 H 1.08995 * 113.61596 * 89.12221 * 19 18 17 36 36 H 1.09007 * 113.61356 * 219.93681 * 19 18 17 37 37 H 1.08997 * 113.61441 * 140.02626 * 20 19 18 38 38 H 1.09000 * 113.61789 * 270.92687 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2405 -3.6593 0.1261 11 1 1.7012 -4.6047 0.0663 12 6 2.9628 -3.5685 1.4723 13 6 3.9661 -4.7194 1.5863 14 6 4.9477 -4.6485 0.4132 15 6 4.1679 -4.7080 -0.9023 16 7 3.2223 -3.5862 -0.9634 17 6 2.5546 -3.5310 -2.2708 18 6 3.5276 -3.3967 -3.4542 19 6 2.6220 -4.3840 -4.2090 20 6 2.1851 -4.9164 -2.8341 21 1 -0.4851 0.8400 0.0004 22 1 0.6938 -2.5970 -0.9322 23 1 0.5584 -2.5188 0.8409 24 1 3.4910 -2.6173 1.5384 25 1 2.2353 -3.6384 2.2810 26 1 4.5136 -4.6338 2.5249 27 1 3.4342 -5.6705 1.5592 28 1 5.5071 -3.7144 0.4626 29 1 5.6383 -5.4902 0.4651 30 1 3.6196 -5.6485 -0.9573 31 1 4.8627 -4.6434 -1.7396 32 1 1.7329 -2.8154 -2.2977 33 1 4.5235 -3.7883 -3.2472 34 1 3.5467 -2.3989 -3.8926 35 1 1.8187 -3.9016 -4.7659 36 1 3.1717 -5.1128 -4.8049 37 1 1.1211 -5.1448 -2.7722 38 1 2.8146 -5.7228 -2.4578 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260947329.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:16 Heat of formation + Delta-G solvation = 13.373865 kcal Electronic energy + Delta-G solvation = -16473.397423 eV Core-core repulsion = 14122.864203 eV Total energy + Delta-G solvation = -2350.533221 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.65322 -36.64975 -33.30609 -31.61614 -30.84935 -26.89915 -25.29502 -24.76448 -23.42966 -22.44329 -20.37682 -19.24805 -18.01776 -16.27302 -15.73084 -15.08928 -14.41694 -14.09904 -13.74480 -13.50150 -13.41249 -12.88059 -12.15431 -12.07875 -11.78383 -11.52196 -11.20436 -11.08981 -10.76539 -10.65426 -10.52090 -10.46581 -10.22710 -10.12396 -9.97493 -9.66983 -9.40441 -8.99587 -8.85379 -8.22611 -7.30294 -5.86456 -3.83497 3.39265 3.47197 3.53126 4.56382 4.62214 5.07203 5.09965 5.27185 5.33627 5.38072 5.47908 5.51045 5.61610 5.86216 5.92436 5.94484 6.07023 6.15338 6.20017 6.24211 6.27391 6.29532 6.39722 6.45082 6.51980 6.56943 6.64576 6.72863 6.96080 7.03171 7.24854 7.64935 7.73413 8.01012 8.10100 8.18099 8.63390 9.25502 9.78616 11.25651 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022511 B = 0.010869 C = 0.008776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.540553 B = 2575.494408 C = 3189.870115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.049 3.951 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.483 4.483 8 H 0.068 0.932 9 C 0.023 3.977 10 C 0.097 3.903 11 H 0.010 0.990 12 C -0.103 4.103 13 C -0.122 4.122 14 C -0.114 4.114 15 C 0.050 3.950 16 N -0.502 5.502 17 C 0.077 3.923 18 C -0.135 4.135 19 C -0.139 4.139 20 C -0.186 4.186 21 H 0.256 0.744 22 H 0.013 0.987 23 H 0.022 0.978 24 H 0.081 0.919 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.025 0.975 31 H 0.066 0.934 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.921 -9.715 -3.027 12.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.150 4.150 3 Si 0.715 3.285 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.522 4.522 8 H 0.086 0.914 9 C -0.014 4.014 10 C -0.011 4.011 11 H 0.028 0.972 12 C -0.141 4.141 13 C -0.159 4.159 14 C -0.152 4.152 15 C -0.078 4.078 16 N -0.225 5.225 17 C -0.032 4.032 18 C -0.173 4.173 19 C -0.177 4.177 20 C -0.225 4.225 21 H 0.065 0.935 22 H 0.031 0.969 23 H 0.040 0.960 24 H 0.099 0.901 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.140 0.860 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.054 -9.152 -2.934 11.922 hybrid contribution -0.112 0.187 -0.148 0.264 sum 6.942 -8.964 -3.083 11.750 Atomic orbital electron populations 1.69978 1.05992 1.26042 1.52587 1.25033 0.94710 0.99048 0.96231 0.86616 0.80355 0.84334 0.77183 1.19716 1.21460 1.21498 1.21244 0.93614 0.89751 1.47580 0.91375 1.19290 0.93110 0.92077 0.96940 1.21665 0.92184 0.97516 0.89694 0.97217 1.21559 0.97433 0.98613 0.96517 1.21638 0.97726 0.99055 0.97522 1.21548 0.97553 1.01359 0.94691 1.22151 0.95616 0.92576 0.97418 1.61741 1.17838 1.40712 1.02173 1.23301 0.97146 0.95278 0.87430 1.23079 0.98204 0.99300 0.96755 1.22669 0.99835 0.99073 0.96110 1.23754 1.01034 1.00203 0.97546 0.93470 0.96863 0.95994 0.90061 0.92602 0.92803 0.93325 0.91301 0.92854 0.95731 0.91575 0.86047 0.90470 0.91475 0.90471 0.92288 0.92177 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 2 C 0.05 1.39 5.46 -17.82 -0.10 1.29 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.48 -13.22 7.78 -34.44 -0.27 -13.48 16 8 H 0.07 1.88 6.88 -52.49 -0.36 1.52 16 9 C 0.02 0.58 4.20 -27.88 -0.12 0.46 16 10 C 0.10 2.01 2.09 -67.72 -0.14 1.87 16 11 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 12 C -0.10 -1.98 5.18 -26.65 -0.14 -2.12 16 13 C -0.12 -1.89 6.00 -26.61 -0.16 -2.05 16 14 C -0.11 -1.70 6.09 -26.65 -0.16 -1.86 16 15 C 0.05 0.81 4.39 -3.83 -0.02 0.79 16 16 N -0.50 -9.66 3.92 -217.61 -0.85 -10.51 16 17 C 0.08 1.43 3.46 -66.75 -0.23 1.20 16 18 C -0.14 -2.14 7.58 -25.91 -0.20 -2.33 16 19 C -0.14 -1.94 8.07 -25.92 -0.21 -2.15 16 20 C -0.19 -2.90 7.38 -25.78 -0.19 -3.09 16 21 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 22 H 0.01 0.35 6.26 -51.93 -0.33 0.03 16 23 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 1.73 6.93 -51.93 -0.36 1.37 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.02 0.39 6.34 -51.93 -0.33 0.06 16 31 H 0.07 0.99 6.03 -51.93 -0.31 0.67 16 32 H 0.12 2.65 5.82 -51.93 -0.30 2.35 16 33 H 0.08 1.15 6.14 -51.93 -0.32 0.83 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.17 5.64 -51.93 -0.29 0.88 16 LS Contribution 283.66 15.07 4.27 4.27 Total: -1.00 -28.75 283.66 -9.18 -37.93 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -6.39 Total: -0.84 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -1.93 Total: -21.48 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: -0.12 Total: -36.88 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.75 -9.18 -37.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260947329.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.300 kcal (2) G-P(sol) polarization free energy of solvation -28.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds