Wall clock time and date at job start Mon Mar 30 2020 03:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99872 * 2 1 4 4 H 1.48504 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47157 * 300.00479 * 3 2 1 6 6 H 1.48498 * 109.46990 * 60.00649 * 3 2 1 7 7 C 1.37878 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99634 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00189 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47337 * 185.06303 * 9 7 2 11 11 H 1.09000 * 109.46075 * 183.35326 * 10 9 7 12 12 C 1.53041 * 109.45195 * 63.37784 * 10 9 7 13 13 C 1.53113 * 109.27566 * 180.81028 * 12 10 9 14 14 C 1.53118 * 109.16296 * 57.65974 * 13 12 10 15 15 C 1.53040 * 109.27586 * 302.34185 * 14 13 12 16 16 N 1.46845 * 109.52263 * 59.17735 * 15 14 13 17 17 C 1.46902 * 111.00131 * 174.16331 * 16 15 14 18 18 C 1.53791 * 113.61378 * 301.91144 * 17 16 15 19 19 C 1.53780 * 87.07924 * 139.98129 * 18 17 16 20 20 C 1.53783 * 87.17469 * 334.52596 * 19 18 17 21 21 H 0.97003 * 120.00508 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47078 * 65.06322 * 9 7 2 23 23 H 1.09000 * 109.46756 * 305.06678 * 9 7 2 24 24 H 1.09005 * 109.49934 * 300.75027 * 12 10 9 25 25 H 1.08998 * 109.50241 * 60.86806 * 12 10 9 26 26 H 1.09006 * 109.52243 * 177.55741 * 13 12 10 27 27 H 1.09000 * 109.52462 * 297.74739 * 13 12 10 28 28 H 1.08996 * 109.51080 * 62.28078 * 14 13 12 29 29 H 1.08996 * 109.50846 * 182.40539 * 14 13 12 30 30 H 1.09004 * 109.46182 * 299.16670 * 15 14 13 31 31 H 1.08995 * 109.46799 * 179.19539 * 15 14 13 32 32 H 1.08999 * 112.91012 * 170.66118 * 17 16 15 33 33 H 1.08998 * 113.60875 * 25.43215 * 18 17 16 34 34 H 1.08999 * 113.61231 * 254.53144 * 18 17 16 35 35 H 1.08995 * 113.61596 * 89.12221 * 19 18 17 36 36 H 1.09007 * 113.61356 * 219.93681 * 19 18 17 37 37 H 1.08997 * 113.61441 * 140.02626 * 20 19 18 38 38 H 1.09000 * 113.61789 * 270.92687 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2405 -3.6593 0.1261 11 1 1.7012 -4.6047 0.0663 12 6 2.9628 -3.5685 1.4723 13 6 3.9661 -4.7194 1.5863 14 6 4.9477 -4.6485 0.4132 15 6 4.1679 -4.7080 -0.9023 16 7 3.2223 -3.5862 -0.9634 17 6 2.5546 -3.5310 -2.2708 18 6 3.5276 -3.3967 -3.4542 19 6 2.6220 -4.3840 -4.2090 20 6 2.1851 -4.9164 -2.8341 21 1 -0.4851 0.8400 0.0004 22 1 0.6938 -2.5970 -0.9322 23 1 0.5584 -2.5188 0.8409 24 1 3.4910 -2.6173 1.5384 25 1 2.2353 -3.6384 2.2810 26 1 4.5136 -4.6338 2.5249 27 1 3.4342 -5.6705 1.5592 28 1 5.5071 -3.7144 0.4626 29 1 5.6383 -5.4902 0.4651 30 1 3.6196 -5.6485 -0.9573 31 1 4.8627 -4.6434 -1.7396 32 1 1.7329 -2.8154 -2.2977 33 1 4.5235 -3.7883 -3.2472 34 1 3.5467 -2.3989 -3.8926 35 1 1.8187 -3.9016 -4.7659 36 1 3.1717 -5.1128 -4.8049 37 1 1.1211 -5.1448 -2.7722 38 1 2.8146 -5.7228 -2.4578 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260947329.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:15 Heat of formation + Delta-G solvation = -2.917664 kcal Electronic energy + Delta-G solvation = -16474.103877 eV Core-core repulsion = 14122.864203 eV Total energy + Delta-G solvation = -2351.239675 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.05880 -38.02455 -35.25828 -33.21765 -32.45900 -28.73821 -26.59999 -26.16592 -25.30578 -23.78191 -21.89978 -20.74330 -19.46505 -18.20418 -17.26304 -16.53729 -16.37431 -15.58760 -15.11154 -15.04208 -14.69871 -14.34305 -14.13976 -13.38648 -13.11945 -13.07234 -12.98235 -12.76250 -12.57523 -12.44290 -12.01284 -11.83572 -11.78386 -11.52017 -11.36943 -11.28266 -10.95287 -10.75567 -10.69020 -10.41446 -8.76946 -8.08072 -6.11159 1.40206 1.41762 1.54798 2.48113 3.15387 3.29639 3.80261 3.85964 3.99624 4.06154 4.13504 4.18087 4.26578 4.46622 4.57227 4.67317 4.72859 4.86868 4.90135 4.93381 4.95815 5.05711 5.08684 5.14186 5.18199 5.20081 5.35860 5.37469 5.43115 5.45639 5.63552 5.68457 5.74558 5.92135 6.35813 6.55611 6.67214 7.04037 7.54497 9.04672 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022511 B = 0.010869 C = 0.008776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.540553 B = 2575.494408 C = 3189.870115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.008 4.008 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.479 4.479 8 H 0.065 0.935 9 C 0.030 3.970 10 C 0.107 3.893 11 H 0.011 0.989 12 C -0.102 4.102 13 C -0.114 4.114 14 C -0.111 4.111 15 C 0.050 3.950 16 N -0.519 5.519 17 C 0.058 3.942 18 C -0.129 4.129 19 C -0.124 4.124 20 C -0.176 4.176 21 H 0.256 0.744 22 H -0.011 1.011 23 H -0.011 1.011 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.034 0.966 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.333 -11.076 -3.540 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.203 4.203 3 Si 0.779 3.221 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.517 4.517 8 H 0.083 0.917 9 C -0.007 4.007 10 C -0.002 4.002 11 H 0.029 0.971 12 C -0.140 4.140 13 C -0.152 4.152 14 C -0.149 4.149 15 C -0.078 4.078 16 N -0.242 5.242 17 C -0.051 4.051 18 C -0.167 4.167 19 C -0.162 4.162 20 C -0.215 4.215 21 H 0.065 0.935 22 H 0.007 0.993 23 H 0.008 0.992 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.052 0.948 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.482 -10.523 -3.453 14.579 hybrid contribution -0.905 0.597 0.012 1.084 sum 8.577 -9.926 -3.441 13.562 Atomic orbital electron populations 1.70111 1.07572 1.26866 1.54037 1.25853 0.95518 1.02714 0.96242 0.85570 0.79319 0.80021 0.77173 1.18831 1.21167 1.21040 1.21418 0.93406 0.90619 1.46279 0.91697 1.19137 0.93478 0.93870 0.94232 1.21393 0.91977 0.95151 0.91631 0.97095 1.21493 0.97973 0.99317 0.95204 1.21581 0.97027 0.97524 0.99020 1.21571 0.97533 1.02295 0.93480 1.22275 0.95094 0.91527 0.98879 1.61705 1.17733 1.43021 1.01726 1.23235 0.97145 0.96340 0.88351 1.23070 0.98670 0.99578 0.95353 1.22610 0.99394 0.98747 0.95441 1.23689 1.00828 0.98738 0.98291 0.93480 0.99278 0.99226 0.92578 0.93297 0.90874 0.92102 0.92433 0.89339 0.94794 0.89899 0.90758 0.88824 0.92466 0.90618 0.89341 0.93132 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.54 13.29 21.45 0.28 -58.25 16 2 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 3 Si 0.95 46.03 29.54 68.60 2.03 48.05 16 4 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 7 C -0.48 -27.07 7.78 25.60 0.20 -26.87 16 8 H 0.06 3.66 6.88 -2.91 -0.02 3.64 16 9 C 0.03 1.59 4.20 29.85 0.13 1.72 16 10 C 0.11 4.50 2.09 44.94 0.09 4.60 16 11 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 12 C -0.10 -3.90 5.18 30.65 0.16 -3.74 16 13 C -0.11 -3.25 6.00 30.67 0.18 -3.06 16 14 C -0.11 -2.93 6.09 30.65 0.19 -2.74 16 15 C 0.05 1.44 4.39 86.33 0.38 1.82 16 16 N -0.52 -19.68 3.92 -842.40 -3.30 -22.98 16 17 C 0.06 2.16 3.46 45.54 0.16 2.32 16 18 C -0.13 -3.86 7.58 31.12 0.24 -3.62 16 19 C -0.12 -3.18 8.07 31.12 0.25 -2.93 16 20 C -0.18 -5.23 7.38 31.21 0.23 -5.00 16 21 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 22 H -0.01 -0.63 6.26 -2.39 -0.01 -0.64 16 23 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 24 H 0.06 2.41 6.93 -2.38 -0.02 2.39 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 30 H 0.03 0.94 6.34 -2.38 -0.02 0.93 16 31 H 0.08 2.14 6.03 -2.39 -0.01 2.13 16 32 H 0.07 3.44 5.82 -2.39 -0.01 3.43 16 33 H 0.09 2.49 6.14 -2.39 -0.01 2.48 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 38 H 0.09 2.52 5.64 -2.39 -0.01 2.51 16 Total: -1.00 -63.92 283.66 2.69 -61.23 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 1.01 Total: 9.47 kcal Atomic # 6 Polarization: -40.18 SS G_CDS: 2.66 Total: -37.52 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -3.01 Total: -81.24 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -63.92 2.69 -61.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260947329.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.313 kcal (2) G-P(sol) polarization free energy of solvation -63.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds