Wall clock time and date at job start Mon Mar 30 2020 03:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99839 * 2 1 4 4 H 1.48501 * 109.46732 * 269.99767 * 3 2 1 5 5 H 1.48492 * 109.47276 * 30.00077 * 3 2 1 6 6 H 1.48499 * 109.46955 * 150.00058 * 3 2 1 7 7 C 1.37879 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99760 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99978 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47114 * 179.97438 * 9 7 2 11 11 H 1.08993 * 108.98135 * 56.04823 * 10 9 7 12 12 C 1.54502 * 109.05699 * 297.08594 * 10 9 7 13 13 C 1.50461 * 108.85387 * 162.26127 * 12 10 9 14 14 C 1.54292 * 113.03046 * 92.15402 * 13 12 10 15 15 C 1.54068 * 112.29250 * 318.30317 * 14 13 12 16 16 N 1.44267 * 111.98366 * 318.91858 * 15 14 13 17 17 C 1.46890 * 111.00016 * 219.30641 * 16 15 14 18 18 C 1.53000 * 117.50145 * 121.63738 * 17 16 15 19 19 C 1.52997 * 60.00347 * 252.51152 * 18 17 16 20 20 C 1.45866 * 109.05379 * 174.99940 * 10 9 7 21 21 H 0.96999 * 119.99829 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47057 * 60.00259 * 9 7 2 23 23 H 1.09004 * 109.47593 * 300.00346 * 9 7 2 24 24 H 1.08994 * 109.57903 * 282.07644 * 12 10 9 25 25 H 1.09004 * 109.57180 * 42.32618 * 12 10 9 26 26 H 1.08993 * 108.77525 * 213.07369 * 13 12 10 27 27 H 1.08996 * 108.77145 * 331.35912 * 13 12 10 28 28 H 1.09006 * 108.91750 * 79.03292 * 14 13 12 29 29 H 1.08999 * 108.91996 * 197.67053 * 14 13 12 30 30 H 1.08997 * 108.97932 * 198.26692 * 15 14 13 31 31 H 1.09003 * 108.97515 * 79.55600 * 15 14 13 32 32 H 1.09004 * 115.56595 * 267.32507 * 17 16 15 33 33 H 1.09002 * 117.49696 * 0.02562 * 18 17 16 34 34 H 1.09002 * 117.50343 * 145.02257 * 18 17 16 35 35 H 1.08999 * 117.49685 * 252.51237 * 19 18 17 36 36 H 1.08997 * 117.50044 * 107.48590 * 19 18 17 37 37 H 1.08999 * 108.79122 * 60.98718 * 20 10 9 38 38 H 1.08999 * 108.79515 * 302.76007 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0014 11 1 3.5967 -3.1636 -0.8528 12 6 3.5633 -3.3323 1.3025 13 6 3.6721 -4.8221 1.1215 14 6 5.0291 -5.3893 1.5877 15 6 6.2113 -4.4938 1.1703 16 7 6.0566 -3.9857 -0.1710 17 6 7.3410 -3.9816 -0.8838 18 6 7.4297 -4.7824 -2.1845 19 6 8.1311 -5.2913 -0.9236 20 6 5.4752 -2.6278 -0.1194 21 1 -0.4850 0.8400 -0.0004 22 1 3.8752 -0.6796 0.8895 23 1 3.8746 -0.6807 -0.8905 24 1 4.2003 -3.0174 2.1290 25 1 2.5288 -3.0631 1.5157 26 1 2.8767 -5.3036 1.6902 27 1 3.5395 -5.0577 0.0656 28 1 5.0202 -5.4792 2.6740 29 1 5.1666 -6.3792 1.1528 30 1 7.1323 -5.0740 1.2256 31 1 6.2811 -3.6539 1.8616 32 1 7.9087 -3.0529 -0.8249 33 1 6.5348 -5.3119 -2.5115 34 1 8.0557 -4.3806 -2.9813 35 1 9.2185 -5.2242 -0.8907 36 1 7.6978 -6.1558 -0.4208 37 1 5.8953 -2.0982 0.7357 38 1 5.7488 -2.0938 -1.0294 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260948237.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:58 Heat of formation + Delta-G solvation = 16.437843 kcal Electronic energy + Delta-G solvation = -15949.693462 eV Core-core repulsion = 13599.293105 eV Total energy + Delta-G solvation = -2350.400357 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.37178 -36.60706 -33.73235 -32.44834 -31.90744 -28.12717 -25.77191 -24.36965 -22.22334 -22.13761 -20.63001 -19.47375 -18.85758 -16.77761 -16.41827 -15.23851 -14.77374 -14.31922 -14.06098 -13.72162 -13.41455 -12.80762 -12.53516 -12.28866 -11.92248 -11.84270 -11.53232 -11.30375 -11.01340 -10.69610 -10.50843 -10.43928 -10.12355 -10.09285 -9.85217 -9.67438 -9.47278 -9.34388 -8.98544 -8.48167 -8.03188 -5.98922 -3.95302 3.33139 3.40597 3.44113 3.81631 3.97298 4.49375 4.94726 4.99935 5.12443 5.15682 5.28939 5.35551 5.51514 5.59677 5.64293 5.66382 5.80674 5.85191 5.94125 5.98942 6.12810 6.15814 6.21766 6.29568 6.37283 6.62304 6.73405 6.80638 6.94099 7.03179 7.23463 7.35017 7.40050 7.44495 7.58629 7.86704 8.61578 9.07543 9.64198 11.14479 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035326 B = 0.007266 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.420985 B = 3852.791663 C = 4311.869447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.510 4.510 8 H 0.075 0.925 9 C -0.009 4.009 10 C -0.071 4.071 11 H 0.068 0.932 12 C -0.105 4.105 13 C -0.108 4.108 14 C -0.106 4.106 15 C 0.055 3.945 16 N -0.502 5.502 17 C 0.009 3.991 18 C -0.164 4.164 19 C -0.182 4.182 20 C 0.069 3.931 21 H 0.261 0.739 22 H 0.013 0.987 23 H 0.009 0.991 24 H 0.044 0.956 25 H 0.081 0.919 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.038 0.962 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.031 0.969 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.906 -9.055 0.634 17.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.548 4.548 8 H 0.093 0.907 9 C -0.047 4.047 10 C -0.090 4.090 11 H 0.087 0.913 12 C -0.142 4.142 13 C -0.146 4.146 14 C -0.145 4.145 15 C -0.074 4.074 16 N -0.225 5.225 17 C -0.100 4.100 18 C -0.201 4.201 19 C -0.220 4.220 20 C -0.057 4.057 21 H 0.071 0.929 22 H 0.031 0.969 23 H 0.027 0.973 24 H 0.062 0.938 25 H 0.100 0.900 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.049 0.951 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.430 -9.249 0.386 17.144 hybrid contribution 0.913 1.511 0.401 1.811 sum 15.343 -7.738 0.787 17.202 Atomic orbital electron populations 1.69914 1.06235 1.26693 1.51630 1.25026 0.94683 0.99004 0.94862 0.86828 0.80366 0.83960 0.78396 1.20430 1.21519 1.19158 1.21135 0.89338 0.94361 1.49950 0.90660 1.19647 0.97420 0.91709 0.95938 1.20014 0.92242 0.98684 0.98052 0.91346 1.21342 1.02738 0.93344 0.96785 1.21229 0.94969 0.96824 1.01562 1.21938 0.95143 0.98227 0.99173 1.21955 0.97902 0.98393 0.89121 1.61401 1.20986 1.23977 1.16092 1.22520 0.92096 0.94721 1.00647 1.23047 1.02489 1.03604 0.91010 1.23055 0.98264 0.97814 1.02823 1.21204 0.97290 0.86949 1.00296 0.92875 0.96859 0.97266 0.93764 0.90005 0.93573 0.91869 0.92785 0.92861 0.92178 0.94341 0.89490 0.88159 0.89149 0.89112 0.88474 0.95127 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.05 13.96 55.43 0.77 -27.27 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.51 -14.41 8.68 -34.44 -0.30 -14.71 16 8 H 0.08 2.28 7.32 -52.49 -0.38 1.90 16 9 C -0.01 -0.22 3.46 -27.88 -0.10 -0.31 16 10 C -0.07 -1.43 1.90 -93.21 -0.18 -1.61 16 11 H 0.07 1.47 7.59 -51.93 -0.39 1.08 16 12 C -0.10 -1.99 4.86 -27.21 -0.13 -2.12 16 13 C -0.11 -1.77 5.42 -27.32 -0.15 -1.91 16 14 C -0.11 -1.46 6.14 -25.50 -0.16 -1.62 16 15 C 0.05 0.76 4.98 -4.67 -0.02 0.73 16 16 N -0.50 -7.52 4.38 -231.55 -1.02 -8.53 16 17 C 0.01 0.12 5.15 -67.71 -0.35 -0.23 16 18 C -0.16 -1.87 10.46 -26.73 -0.28 -2.15 16 19 C -0.18 -1.92 9.23 -26.73 -0.25 -2.16 16 20 C 0.07 1.19 4.08 -6.70 -0.03 1.16 16 21 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 22 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 23 H 0.01 0.22 7.52 -51.93 -0.39 -0.17 16 24 H 0.04 0.80 7.15 -51.93 -0.37 0.43 16 25 H 0.08 1.79 6.49 -51.93 -0.34 1.45 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.10 7.38 -51.93 -0.38 0.72 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.73 6.09 -51.93 -0.32 0.41 16 31 H 0.04 0.56 6.51 -51.93 -0.34 0.22 16 32 H 0.09 1.09 8.04 -51.93 -0.42 0.67 16 33 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.10 1.04 7.49 -51.93 -0.39 0.65 16 37 H 0.03 0.53 7.24 -51.93 -0.38 0.15 16 38 H 0.06 1.06 7.75 -51.93 -0.40 0.66 16 LS Contribution 287.32 15.07 4.33 4.33 Total: -1.00 -29.59 287.32 -9.19 -38.78 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -6.58 Total: -1.43 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -2.03 Total: -23.14 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: -0.24 Total: -35.81 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.59 -9.19 -38.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260948237.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.216 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds