Wall clock time and date at job start Mon Mar 30 2020 03:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99839 * 2 1 4 4 H 1.48501 * 109.46732 * 269.99767 * 3 2 1 5 5 H 1.48492 * 109.47276 * 30.00077 * 3 2 1 6 6 H 1.48499 * 109.46955 * 150.00058 * 3 2 1 7 7 C 1.37879 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99760 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99978 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47114 * 179.97438 * 9 7 2 11 11 H 1.08993 * 108.98135 * 56.04823 * 10 9 7 12 12 C 1.54502 * 109.05699 * 297.08594 * 10 9 7 13 13 C 1.50461 * 108.85387 * 162.26127 * 12 10 9 14 14 C 1.54292 * 113.03046 * 92.15402 * 13 12 10 15 15 C 1.54068 * 112.29250 * 318.30317 * 14 13 12 16 16 N 1.44267 * 111.98366 * 318.91858 * 15 14 13 17 17 C 1.46890 * 111.00016 * 219.30641 * 16 15 14 18 18 C 1.53000 * 117.50145 * 121.63738 * 17 16 15 19 19 C 1.52997 * 60.00347 * 252.51152 * 18 17 16 20 20 C 1.45866 * 109.05379 * 174.99940 * 10 9 7 21 21 H 0.96999 * 119.99829 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47057 * 60.00259 * 9 7 2 23 23 H 1.09004 * 109.47593 * 300.00346 * 9 7 2 24 24 H 1.08994 * 109.57903 * 282.07644 * 12 10 9 25 25 H 1.09004 * 109.57180 * 42.32618 * 12 10 9 26 26 H 1.08993 * 108.77525 * 213.07369 * 13 12 10 27 27 H 1.08996 * 108.77145 * 331.35912 * 13 12 10 28 28 H 1.09006 * 108.91750 * 79.03292 * 14 13 12 29 29 H 1.08999 * 108.91996 * 197.67053 * 14 13 12 30 30 H 1.08997 * 108.97932 * 198.26692 * 15 14 13 31 31 H 1.09003 * 108.97515 * 79.55600 * 15 14 13 32 32 H 1.09004 * 115.56595 * 267.32507 * 17 16 15 33 33 H 1.09002 * 117.49696 * 0.02562 * 18 17 16 34 34 H 1.09002 * 117.50343 * 145.02257 * 18 17 16 35 35 H 1.08999 * 117.49685 * 252.51237 * 19 18 17 36 36 H 1.08997 * 117.50044 * 107.48590 * 19 18 17 37 37 H 1.08999 * 108.79122 * 60.98718 * 20 10 9 38 38 H 1.08999 * 108.79515 * 302.76007 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0014 11 1 3.5967 -3.1636 -0.8528 12 6 3.5633 -3.3323 1.3025 13 6 3.6721 -4.8221 1.1215 14 6 5.0291 -5.3893 1.5877 15 6 6.2113 -4.4938 1.1703 16 7 6.0566 -3.9857 -0.1710 17 6 7.3410 -3.9816 -0.8838 18 6 7.4297 -4.7824 -2.1845 19 6 8.1311 -5.2913 -0.9236 20 6 5.4752 -2.6278 -0.1194 21 1 -0.4850 0.8400 -0.0004 22 1 3.8752 -0.6796 0.8895 23 1 3.8746 -0.6807 -0.8905 24 1 4.2003 -3.0174 2.1290 25 1 2.5288 -3.0631 1.5157 26 1 2.8767 -5.3036 1.6902 27 1 3.5395 -5.0577 0.0656 28 1 5.0202 -5.4792 2.6740 29 1 5.1666 -6.3792 1.1528 30 1 7.1323 -5.0740 1.2256 31 1 6.2811 -3.6539 1.8616 32 1 7.9087 -3.0529 -0.8249 33 1 6.5348 -5.3119 -2.5115 34 1 8.0557 -4.3806 -2.9813 35 1 9.2185 -5.2242 -0.8907 36 1 7.6978 -6.1558 -0.4208 37 1 5.8953 -2.0982 0.7357 38 1 5.7488 -2.0938 -1.0294 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260948237.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:58 Heat of formation + Delta-G solvation = -1.173465 kcal Electronic energy + Delta-G solvation = -15950.457146 eV Core-core repulsion = 13599.293105 eV Total energy + Delta-G solvation = -2351.164040 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.60817 -37.81999 -35.40469 -33.87940 -33.63529 -29.92528 -27.23453 -25.71221 -23.86871 -23.08511 -21.83118 -21.00792 -20.15395 -18.90895 -17.51077 -16.62453 -16.19111 -15.87263 -15.43024 -15.12650 -14.84691 -14.55572 -14.11975 -13.70138 -13.37020 -13.24899 -12.87851 -12.73270 -12.45533 -12.21629 -11.94564 -11.74268 -11.55520 -11.49929 -11.36038 -11.15201 -11.05525 -10.95141 -10.83621 -10.68547 -9.15824 -8.25446 -6.27342 1.35102 1.36685 1.48409 2.37558 2.84268 2.95064 3.09344 3.85244 4.04644 4.06529 4.13666 4.15906 4.33559 4.37288 4.41783 4.43428 4.60794 4.74517 4.80289 4.85431 4.94629 4.97149 5.01309 5.08531 5.15303 5.17543 5.27273 5.36652 5.39774 5.43061 5.60369 5.60808 5.72121 5.78309 6.19527 6.36959 6.38707 6.79788 7.35610 8.91325 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035326 B = 0.007266 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.420985 B = 3852.791663 C = 4311.869447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.248 1.248 7 C -0.515 4.515 8 H 0.035 0.965 9 C -0.006 4.006 10 C -0.061 4.061 11 H 0.045 0.955 12 C -0.098 4.098 13 C -0.104 4.104 14 C -0.101 4.101 15 C 0.053 3.947 16 N -0.510 5.510 17 C -0.013 4.013 18 C -0.167 4.167 19 C -0.159 4.159 20 C 0.077 3.923 21 H 0.264 0.736 22 H 0.017 0.983 23 H 0.014 0.986 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.033 0.967 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.098 0.902 37 H 0.035 0.965 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.021 -9.216 0.939 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.194 4.194 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.172 1.172 7 C -0.553 4.553 8 H 0.053 0.947 9 C -0.044 4.044 10 C -0.080 4.080 11 H 0.064 0.936 12 C -0.136 4.136 13 C -0.142 4.142 14 C -0.139 4.139 15 C -0.075 4.075 16 N -0.233 5.233 17 C -0.121 4.121 18 C -0.205 4.205 19 C -0.197 4.197 20 C -0.050 4.050 21 H 0.073 0.927 22 H 0.035 0.965 23 H 0.032 0.968 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.051 0.949 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.132 0.868 36 H 0.116 0.884 37 H 0.053 0.947 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 17.565 -9.433 0.688 19.950 hybrid contribution -0.129 1.466 0.284 1.499 sum 17.437 -7.967 0.972 19.195 Atomic orbital electron populations 1.70072 1.08217 1.27895 1.53297 1.25982 0.95563 1.03307 0.94570 0.85710 0.79522 0.78663 0.79054 1.19364 1.21085 1.17160 1.21411 0.91775 0.92938 1.49177 0.94681 1.19594 0.94338 0.94427 0.96018 1.19861 0.94470 0.96037 0.97675 0.93618 1.21221 1.00354 0.95399 0.96615 1.21141 0.97393 0.94855 1.00787 1.21914 0.93106 0.98616 1.00281 1.22019 0.98765 0.98438 0.88313 1.61285 1.22730 1.22241 1.17063 1.22626 0.91630 0.96258 1.01594 1.23089 1.02512 1.03383 0.91507 1.23128 0.99281 0.96115 1.01148 1.20934 0.94964 0.88701 1.00449 0.92695 0.96494 0.96802 0.92658 0.93953 0.93180 0.93475 0.91109 0.91477 0.89867 0.94877 0.88965 0.89607 0.87598 0.86821 0.88389 0.94685 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 2 C 0.00 0.11 5.47 84.66 0.46 0.57 16 3 Si 0.95 45.19 27.47 68.60 1.88 47.08 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 7 C -0.51 -30.16 8.68 25.60 0.22 -29.94 16 8 H 0.03 2.27 7.32 -2.91 -0.02 2.25 16 9 C -0.01 -0.27 3.46 29.85 0.10 -0.17 16 10 C -0.06 -2.50 1.90 -12.47 -0.02 -2.52 16 11 H 0.05 2.04 7.59 -2.39 -0.02 2.02 16 12 C -0.10 -3.80 4.86 30.28 0.15 -3.65 16 13 C -0.10 -3.37 5.42 30.21 0.16 -3.21 16 14 C -0.10 -2.53 6.14 31.39 0.19 -2.33 16 15 C 0.05 1.31 4.98 87.16 0.43 1.74 16 16 N -0.51 -14.32 4.38 -886.48 -3.89 -18.20 16 17 C -0.01 -0.29 5.15 44.92 0.23 -0.06 16 18 C -0.17 -3.41 10.46 30.59 0.32 -3.09 16 19 C -0.16 -2.77 9.23 30.60 0.28 -2.49 16 20 C 0.08 2.55 4.08 83.94 0.34 2.89 16 21 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 22 H 0.02 0.80 7.20 -2.38 -0.02 0.78 16 23 H 0.01 0.64 7.52 -2.39 -0.02 0.63 16 24 H 0.05 1.98 7.15 -2.39 -0.02 1.96 16 25 H 0.04 1.94 6.49 -2.38 -0.02 1.93 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.05 1.66 7.38 -2.39 -0.02 1.64 16 28 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 1.69 6.09 -2.39 -0.01 1.68 16 31 H 0.03 0.87 6.51 -2.39 -0.02 0.85 16 32 H 0.09 2.03 8.04 -2.38 -0.02 2.01 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.10 1.72 7.49 -2.39 -0.02 1.70 16 37 H 0.03 1.13 7.24 -2.39 -0.02 1.12 16 38 H 0.06 2.04 7.75 -2.39 -0.02 2.02 16 Total: -1.00 -65.35 287.32 2.13 -63.22 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.95 Total: 10.80 kcal Atomic # 6 Polarization: -45.13 SS G_CDS: 2.88 Total: -42.25 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -3.59 Total: -78.85 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.08 kcal Total: -65.35 2.13 -63.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260948237.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.051 kcal (2) G-P(sol) polarization free energy of solvation -65.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds