Wall clock time and date at job start Mon Mar 30 2020 02:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99758 * 2 1 4 4 H 1.48503 * 109.47130 * 269.99714 * 3 2 1 5 5 H 1.48500 * 109.47432 * 29.99909 * 3 2 1 6 6 H 1.48498 * 109.47282 * 150.00133 * 3 2 1 7 7 C 1.37876 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00032 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47444 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47280 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.87308 * 57.39023 * 11 10 9 13 13 C 1.55138 * 110.99133 * 293.54066 * 11 10 9 14 14 C 1.54319 * 103.01839 * 206.21612 * 13 11 10 15 15 N 1.47436 * 107.23253 * 22.28853 * 14 13 11 16 16 C 1.46899 * 111.00084 * 123.25552 * 15 14 13 17 17 C 1.53786 * 113.61541 * 59.86999 * 16 15 14 18 18 C 1.53781 * 87.17350 * 140.02506 * 17 16 15 19 19 C 1.53781 * 87.08070 * 334.52830 * 18 17 16 20 20 C 1.47843 * 108.56947 * 0.98817 * 15 14 13 21 21 H 0.96996 * 119.99899 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46966 * 59.99795 * 9 7 2 23 23 H 1.09007 * 109.46983 * 300.00781 * 9 7 2 24 24 H 1.08999 * 109.47152 * 59.99434 * 10 9 7 25 25 H 1.09007 * 109.46775 * 300.00302 * 10 9 7 26 26 H 1.09000 * 110.69917 * 87.83727 * 13 11 10 27 27 H 1.09002 * 110.85683 * 324.67728 * 13 11 10 28 28 H 1.08994 * 109.88761 * 262.87571 * 14 13 11 29 29 H 1.09001 * 110.01793 * 141.77150 * 14 13 11 30 30 H 1.09000 * 112.90940 * 288.62267 * 16 15 14 31 31 H 1.09002 * 113.61357 * 25.43422 * 17 16 15 32 32 H 1.09002 * 113.61608 * 254.61584 * 17 16 15 33 33 H 1.08999 * 113.61567 * 89.07405 * 18 17 16 34 34 H 1.09000 * 113.61379 * 219.89528 * 18 17 16 35 35 H 1.09005 * 113.61471 * 139.98321 * 19 18 17 36 36 H 1.08996 * 113.61178 * 270.79663 * 19 18 17 37 37 H 1.08998 * 110.37515 * 94.73235 * 20 15 14 38 38 H 1.09003 * 110.37143 * 217.07543 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 1 0.8112 -5.0487 -0.8593 13 6 0.7011 -5.1795 1.3264 14 6 0.5913 -6.7141 1.4457 15 7 1.6719 -7.2943 0.6274 16 6 2.5301 -8.1720 1.4343 17 6 1.7783 -9.3530 2.0708 18 6 3.0053 -10.2167 1.7343 19 6 3.3020 -9.2158 0.6051 20 6 2.4545 -6.1911 0.0306 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 2.8721 -3.6043 0.8894 25 1 2.8721 -3.6042 -0.8906 26 1 -0.2881 -4.7263 1.2616 27 1 1.2585 -4.7663 2.1670 28 1 -0.3768 -7.0468 1.0715 29 1 0.7105 -7.0170 2.4860 30 1 3.1564 -7.6232 2.1376 31 1 0.8787 -9.6418 1.5272 32 1 1.6069 -9.2359 3.1408 33 1 3.7614 -10.2258 2.5194 34 1 2.7520 -11.2155 1.3789 35 1 4.3617 -8.9868 0.4919 36 1 2.8203 -9.4680 -0.3395 37 1 3.3211 -5.9618 0.6506 38 1 2.7684 -6.4521 -0.9802 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260957473.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:18 Heat of formation + Delta-G solvation = 0.095550 kcal Electronic energy + Delta-G solvation = -15323.001222 eV Core-core repulsion = 12971.892210 eV Total energy + Delta-G solvation = -2351.109012 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.66835 -37.26746 -33.79646 -31.89093 -29.34574 -28.32598 -25.64869 -24.94460 -23.66859 -21.31935 -20.70480 -19.68450 -18.90793 -16.37154 -16.06417 -15.66903 -15.22943 -14.41429 -13.90268 -13.51819 -13.03884 -12.66957 -12.60544 -12.43146 -12.04412 -11.99041 -11.54073 -11.30125 -10.98326 -10.90991 -10.82001 -10.46133 -10.38434 -10.31820 -10.25756 -10.06058 -9.60249 -9.19855 -8.98913 -8.31585 -8.14457 -5.96998 -3.99065 3.33193 3.39300 3.42714 4.14009 4.47074 4.50178 4.62448 4.77812 4.86099 5.07082 5.22530 5.38578 5.40101 5.47689 5.58931 5.62774 5.75117 5.77263 5.84275 5.89549 5.92070 6.11313 6.16454 6.23303 6.35496 6.39343 6.49039 6.55424 6.78675 6.97420 7.12288 7.20078 7.34975 7.72365 7.88536 8.04252 8.47155 9.08467 9.64750 11.14277 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.068126 B = 0.004673 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.907293 B = 5990.057657 C = 6189.597256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.023 3.977 10 C -0.100 4.100 11 C -0.093 4.093 12 H 0.077 0.923 13 C -0.133 4.133 14 C 0.043 3.957 15 N -0.521 5.521 16 C 0.049 3.951 17 C -0.130 4.130 18 C -0.143 4.143 19 C -0.126 4.126 20 C 0.046 3.954 21 H 0.260 0.740 22 H 0.014 0.986 23 H 0.017 0.983 24 H 0.045 0.955 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.868 -17.500 3.292 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.138 4.138 11 C -0.112 4.112 12 H 0.095 0.905 13 C -0.171 4.171 14 C -0.084 4.084 15 N -0.245 5.245 16 C -0.060 4.060 17 C -0.168 4.168 18 C -0.181 4.181 19 C -0.164 4.164 20 C -0.081 4.081 21 H 0.069 0.931 22 H 0.033 0.967 23 H 0.035 0.965 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.502 -17.700 2.912 18.277 hybrid contribution 0.789 1.522 0.684 1.846 sum 4.292 -16.178 3.596 17.120 Atomic orbital electron populations 1.69967 1.06025 1.26492 1.51063 1.25020 0.94830 0.99178 0.95427 0.86625 0.79855 0.83614 0.78092 1.20674 1.21248 1.19936 1.21297 0.93005 0.91263 1.50305 0.92834 1.19090 0.93993 0.91156 0.97209 1.21593 0.98752 0.93390 1.00097 1.22394 0.96634 0.94684 0.97470 0.90455 1.22793 1.01675 0.94404 0.98270 1.22767 0.95461 0.94391 0.95818 1.63797 1.10861 1.18732 1.31148 1.23370 0.95043 0.92682 0.94950 1.22979 0.97974 0.95751 1.00114 1.22725 0.98313 0.98092 0.98966 1.22975 0.99636 0.95532 0.98212 1.23114 0.95657 0.90001 0.99349 0.93069 0.96723 0.96456 0.93603 0.93305 0.90609 0.91642 0.91003 0.93266 0.91968 0.89382 0.91985 0.90497 0.91331 0.91967 0.89322 0.93845 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.59 4.82 -27.89 -0.13 0.45 16 10 C -0.10 -2.10 4.67 -26.74 -0.12 -2.22 16 11 C -0.09 -1.63 3.06 -88.48 -0.27 -1.90 16 12 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 13 C -0.13 -2.20 5.58 -24.91 -0.14 -2.34 16 14 C 0.04 0.61 6.45 -2.84 -0.02 0.59 16 15 N -0.52 -7.32 5.13 -222.16 -1.14 -8.46 16 16 C 0.05 0.58 2.87 -66.76 -0.19 0.39 16 17 C -0.13 -1.33 6.80 -25.92 -0.18 -1.50 16 18 C -0.14 -1.28 8.08 -25.92 -0.21 -1.49 16 19 C -0.13 -1.31 7.83 -25.78 -0.20 -1.51 16 20 C 0.05 0.70 6.14 -2.30 -0.01 0.69 16 21 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 22 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.02 0.47 7.50 -51.93 -0.39 0.08 16 24 H 0.05 0.95 8.11 -51.93 -0.42 0.53 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.08 1.30 8.13 -51.93 -0.42 0.88 16 27 H 0.06 1.12 8.02 -51.93 -0.42 0.70 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.64 7.14 -51.93 -0.37 0.27 16 30 H 0.06 0.78 7.95 -51.93 -0.41 0.37 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.04 0.66 7.58 -51.93 -0.39 0.27 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 300.21 15.07 4.52 4.52 Total: -1.00 -29.72 300.21 -9.81 -39.53 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -7.02 Total: -3.38 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -1.89 Total: -22.59 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: -0.40 Total: -34.98 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.72 -9.81 -39.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260957473.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.627 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds