Wall clock time and date at job start Mon Mar 30 2020 02:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99758 * 2 1 4 4 H 1.48503 * 109.47130 * 269.99714 * 3 2 1 5 5 H 1.48500 * 109.47432 * 29.99909 * 3 2 1 6 6 H 1.48498 * 109.47282 * 150.00133 * 3 2 1 7 7 C 1.37876 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00032 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47444 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47280 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.87308 * 57.39023 * 11 10 9 13 13 C 1.55138 * 110.99133 * 293.54066 * 11 10 9 14 14 C 1.54319 * 103.01839 * 206.21612 * 13 11 10 15 15 N 1.47436 * 107.23253 * 22.28853 * 14 13 11 16 16 C 1.46899 * 111.00084 * 123.25552 * 15 14 13 17 17 C 1.53786 * 113.61541 * 59.86999 * 16 15 14 18 18 C 1.53781 * 87.17350 * 140.02506 * 17 16 15 19 19 C 1.53781 * 87.08070 * 334.52830 * 18 17 16 20 20 C 1.47843 * 108.56947 * 0.98817 * 15 14 13 21 21 H 0.96996 * 119.99899 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46966 * 59.99795 * 9 7 2 23 23 H 1.09007 * 109.46983 * 300.00781 * 9 7 2 24 24 H 1.08999 * 109.47152 * 59.99434 * 10 9 7 25 25 H 1.09007 * 109.46775 * 300.00302 * 10 9 7 26 26 H 1.09000 * 110.69917 * 87.83727 * 13 11 10 27 27 H 1.09002 * 110.85683 * 324.67728 * 13 11 10 28 28 H 1.08994 * 109.88761 * 262.87571 * 14 13 11 29 29 H 1.09001 * 110.01793 * 141.77150 * 14 13 11 30 30 H 1.09000 * 112.90940 * 288.62267 * 16 15 14 31 31 H 1.09002 * 113.61357 * 25.43422 * 17 16 15 32 32 H 1.09002 * 113.61608 * 254.61584 * 17 16 15 33 33 H 1.08999 * 113.61567 * 89.07405 * 18 17 16 34 34 H 1.09000 * 113.61379 * 219.89528 * 18 17 16 35 35 H 1.09005 * 113.61471 * 139.98321 * 19 18 17 36 36 H 1.08996 * 113.61178 * 270.79663 * 19 18 17 37 37 H 1.08998 * 110.37515 * 94.73235 * 20 15 14 38 38 H 1.09003 * 110.37143 * 217.07543 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 1 0.8112 -5.0487 -0.8593 13 6 0.7011 -5.1795 1.3264 14 6 0.5913 -6.7141 1.4457 15 7 1.6719 -7.2943 0.6274 16 6 2.5301 -8.1720 1.4343 17 6 1.7783 -9.3530 2.0708 18 6 3.0053 -10.2167 1.7343 19 6 3.3020 -9.2158 0.6051 20 6 2.4545 -6.1911 0.0306 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 2.8721 -3.6043 0.8894 25 1 2.8721 -3.6042 -0.8906 26 1 -0.2881 -4.7263 1.2616 27 1 1.2585 -4.7663 2.1670 28 1 -0.3768 -7.0468 1.0715 29 1 0.7105 -7.0170 2.4860 30 1 3.1564 -7.6232 2.1376 31 1 0.8787 -9.6418 1.5272 32 1 1.6069 -9.2359 3.1408 33 1 3.7614 -10.2258 2.5194 34 1 2.7520 -11.2155 1.3789 35 1 4.3617 -8.9868 0.4919 36 1 2.8203 -9.4680 -0.3395 37 1 3.3211 -5.9618 0.6506 38 1 2.7684 -6.4521 -0.9802 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260957473.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:18 Heat of formation + Delta-G solvation = -16.800488 kcal Electronic energy + Delta-G solvation = -15323.733889 eV Core-core repulsion = 12971.892210 eV Total energy + Delta-G solvation = -2351.841679 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.72279 -38.39669 -35.70021 -33.72025 -30.70702 -29.91170 -26.85612 -26.25559 -24.89551 -23.06317 -21.91026 -21.01573 -19.99029 -18.45732 -17.22770 -16.90556 -16.47524 -16.19080 -15.20430 -14.82202 -14.53063 -14.23313 -13.94388 -13.55708 -13.38786 -13.25316 -13.07426 -12.82575 -12.60001 -12.49814 -12.20471 -11.98180 -11.70204 -11.63759 -11.39527 -11.23071 -11.19197 -11.07668 -10.89573 -10.54817 -9.27027 -8.20164 -6.31473 1.38781 1.40259 1.51309 2.40293 3.05743 3.12604 3.54956 3.76498 3.81098 3.89693 4.00630 4.05603 4.16165 4.34698 4.50213 4.56392 4.67183 4.77719 4.83711 4.87080 4.89363 4.96318 4.97922 5.06633 5.10767 5.11818 5.20424 5.29452 5.37446 5.39861 5.52866 5.54133 5.78021 5.86242 5.99411 6.24908 6.28628 6.85998 7.37739 8.91520 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.068126 B = 0.004673 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.907293 B = 5990.057657 C = 6189.597256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.028 3.972 10 C -0.087 4.087 11 C -0.092 4.092 12 H 0.068 0.932 13 C -0.133 4.133 14 C 0.052 3.948 15 N -0.524 5.524 16 C 0.036 3.964 17 C -0.127 4.127 18 C -0.132 4.132 19 C -0.125 4.125 20 C 0.057 3.943 21 H 0.263 0.737 22 H -0.013 1.013 23 H -0.005 1.005 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.165 -18.428 3.709 19.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.009 4.009 10 C -0.125 4.125 11 C -0.111 4.111 12 H 0.086 0.914 13 C -0.172 4.172 14 C -0.076 4.076 15 N -0.248 5.248 16 C -0.073 4.073 17 C -0.165 4.165 18 C -0.170 4.170 19 C -0.163 4.163 20 C -0.071 4.071 21 H 0.072 0.928 22 H 0.005 0.995 23 H 0.014 0.986 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.809 -18.648 3.330 19.544 hybrid contribution 0.353 1.809 0.553 1.925 sum 5.162 -16.839 3.883 18.035 Atomic orbital electron populations 1.70101 1.07791 1.27726 1.51735 1.25981 0.95768 1.03332 0.94729 0.85463 0.78670 0.78479 0.78537 1.19722 1.20652 1.18787 1.21747 0.93499 0.92639 1.50499 0.92398 1.18975 0.94355 0.92835 0.94749 1.21378 0.97667 0.93216 1.00207 1.22270 0.96999 0.94118 0.97732 0.91382 1.22750 1.00536 0.96523 0.97348 1.22704 0.95962 0.92123 0.96808 1.63847 1.11078 1.18164 1.31755 1.23561 0.95502 0.92808 0.95389 1.22965 0.98245 0.94926 1.00339 1.22701 0.97706 0.98146 0.98416 1.22969 0.99581 0.95378 0.98327 1.22967 0.94929 0.89136 1.00048 0.92789 0.99471 0.98637 0.93437 0.93047 0.92056 0.92425 0.90416 0.91854 0.92395 0.89710 0.91269 0.89431 0.90110 0.91536 0.89844 0.93726 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.77 13.29 21.45 0.28 -57.49 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.96 44.92 29.54 68.60 2.03 46.94 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 7 C -0.55 -31.85 9.11 25.60 0.23 -31.62 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.03 1.51 4.82 29.85 0.14 1.65 16 10 C -0.09 -3.67 4.67 30.59 0.14 -3.53 16 11 C -0.09 -3.25 3.06 -9.41 -0.03 -3.28 16 12 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 13 C -0.13 -4.44 5.58 31.77 0.18 -4.26 16 14 C 0.05 1.39 6.45 86.65 0.56 1.95 16 15 N -0.52 -13.95 5.13 -856.78 -4.40 -18.35 16 16 C 0.04 0.79 2.87 45.53 0.13 0.92 16 17 C -0.13 -2.27 6.80 31.12 0.21 -2.06 16 18 C -0.13 -1.98 8.08 31.12 0.25 -1.72 16 19 C -0.12 -2.32 7.83 31.21 0.24 -2.07 16 20 C 0.06 1.66 6.14 86.77 0.53 2.19 16 21 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 22 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 23 H 0.00 -0.27 7.50 -2.38 -0.02 -0.29 16 24 H 0.05 1.97 8.11 -2.39 -0.02 1.95 16 25 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 26 H 0.06 2.19 8.13 -2.39 -0.02 2.17 16 27 H 0.06 1.99 8.02 -2.39 -0.02 1.97 16 28 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.06 1.53 7.14 -2.39 -0.02 1.52 16 30 H 0.06 1.35 7.95 -2.39 -0.02 1.33 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.04 1.30 7.58 -2.39 -0.02 1.28 16 38 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -63.50 300.21 1.96 -61.54 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 0.98 Total: 8.75 kcal Atomic # 6 Polarization: -44.45 SS G_CDS: 3.06 Total: -41.39 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -4.11 Total: -75.84 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -63.50 1.96 -61.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260957473.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.738 kcal (2) G-P(sol) polarization free energy of solvation -63.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds