Wall clock time and date at job start Mon Mar 30 2020 03:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99561 * 2 1 4 4 H 1.48497 * 109.47081 * 264.81680 * 3 2 1 5 5 H 1.48501 * 109.47033 * 24.82064 * 3 2 1 6 6 H 1.48501 * 109.46822 * 144.81827 * 3 2 1 7 7 C 1.37870 * 120.00458 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00410 * 5.23627 * 7 2 1 9 9 C 1.50702 * 120.00095 * 185.23709 * 7 2 1 10 10 H 1.08991 * 108.64146 * 36.73333 * 9 7 2 11 11 C 1.50464 * 108.77057 * 154.98409 * 9 7 2 12 12 C 1.54503 * 108.84827 * 213.06687 * 11 9 7 13 13 C 1.45860 * 111.59858 * 282.81177 * 12 11 9 14 14 N 1.47806 * 112.92180 * 61.32195 * 13 12 11 15 15 C 1.46901 * 110.99760 * 153.87833 * 14 13 12 16 16 C 1.53780 * 113.61722 * 36.11444 * 15 14 13 17 17 C 1.53953 * 87.02249 * 220.04436 * 16 15 14 18 18 C 1.53778 * 113.61978 * 298.50381 * 15 14 13 19 19 C 1.44267 * 109.45781 * 276.74991 * 14 13 12 20 20 C 1.54064 * 111.98348 * 96.43326 * 19 14 13 21 21 H 0.96997 * 120.00666 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.57460 * 93.25720 * 11 9 7 23 23 H 1.08994 * 109.67942 * 332.94011 * 11 9 7 24 24 H 1.09002 * 109.05920 * 162.26526 * 12 11 9 25 25 H 1.09003 * 109.05771 * 43.35403 * 12 11 9 26 26 H 1.09005 * 108.79455 * 300.44078 * 13 12 11 27 27 H 1.08996 * 108.70904 * 182.15256 * 13 12 11 28 28 H 1.09004 * 112.84659 * 167.30859 * 15 14 13 29 29 H 1.09005 * 113.61095 * 334.56196 * 16 15 14 30 30 H 1.09002 * 113.61832 * 105.46298 * 16 15 14 31 31 H 1.08994 * 113.53921 * 270.81256 * 17 16 15 32 32 H 1.09001 * 113.66746 * 139.92216 * 17 16 15 33 33 H 1.08995 * 113.61748 * 254.53360 * 18 15 14 34 34 H 1.09009 * 113.61262 * 25.43318 * 18 15 14 35 35 H 1.09002 * 108.97576 * 217.08174 * 19 14 13 36 36 H 1.09003 * 108.97629 * 335.78872 * 19 14 13 37 37 H 1.09003 * 108.91470 * 79.63456 * 20 19 14 38 38 H 1.08999 * 108.91651 * 198.18233 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6060 1.9833 -1.3943 5 1 1.3959 2.6818 0.5877 6 1 3.4876 1.4744 0.8067 7 6 2.0046 -1.1939 0.0005 8 1 1.4681 -2.1274 -0.0844 9 6 3.5069 -1.1965 0.1197 10 1 3.8038 -0.3982 0.7997 11 6 3.9443 -2.5142 0.6995 12 6 5.2007 -2.2845 1.5689 13 6 6.3971 -2.1204 0.7508 14 7 6.3216 -0.9523 -0.1517 15 6 7.6635 -0.4504 -0.4763 16 6 8.7178 -1.5603 -0.6223 17 6 9.6908 -0.6222 0.1150 18 6 8.4537 0.0338 0.7508 19 6 5.6018 -1.3151 -1.3482 20 6 4.1156 -0.9169 -1.2702 21 1 -0.4851 0.8400 -0.0004 22 1 4.1804 -3.2079 -0.1074 23 1 3.1453 -2.9279 1.3146 24 1 5.3368 -3.1398 2.2308 25 1 5.0569 -1.3884 2.1725 26 1 6.5380 -3.0193 0.1504 27 1 7.2572 -2.0004 1.4093 28 1 7.6609 0.2608 -1.3024 29 1 8.4782 -2.4661 -0.0652 30 1 9.0012 -1.7602 -1.6556 31 1 10.2436 0.0413 -0.5499 32 1 10.3316 -1.1334 0.8334 33 1 8.5243 1.1190 0.8244 34 1 8.1418 -0.4353 1.6840 35 1 6.0587 -0.8148 -2.2021 36 1 5.6729 -2.3934 -1.4914 37 1 4.0229 0.1469 -1.4891 38 1 3.5591 -1.4798 -2.0196 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260968008.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:41 Heat of formation + Delta-G solvation = 20.842299 kcal Electronic energy + Delta-G solvation = -16349.106544 eV Core-core repulsion = 13998.897178 eV Total energy + Delta-G solvation = -2350.209365 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.00071 -37.01556 -33.47661 -32.20834 -31.19606 -26.88888 -25.61785 -25.29260 -23.61822 -22.34673 -20.63564 -18.61425 -18.43418 -16.88664 -16.19658 -15.55780 -14.68128 -14.30447 -13.98862 -13.51180 -13.09014 -12.73042 -12.61402 -12.34966 -12.17286 -11.85106 -11.53765 -11.27780 -10.95461 -10.77853 -10.58312 -10.48590 -10.30013 -9.99724 -9.95441 -9.61347 -9.46159 -9.03735 -8.67468 -8.37744 -7.78955 -5.94527 -3.91687 3.41342 3.48567 3.57376 4.19928 4.56723 4.64330 4.69298 4.89390 4.95836 5.26491 5.36044 5.52959 5.62830 5.67884 5.69703 5.77341 5.84499 5.91709 5.99890 6.01596 6.11305 6.18991 6.27643 6.33277 6.38719 6.53411 6.63435 6.74471 7.01475 7.03544 7.23757 7.48027 7.60262 7.71686 7.80815 7.98116 8.68614 9.11338 9.70520 11.18960 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.038195 B = 0.008603 C = 0.007869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.897544 B = 3253.880671 C = 3557.588232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.256 1.256 7 C -0.510 4.510 8 H 0.068 0.932 9 C 0.015 3.985 10 H 0.041 0.959 11 C -0.092 4.092 12 C -0.122 4.122 13 C 0.064 3.936 14 N -0.514 5.514 15 C 0.065 3.935 16 C -0.180 4.180 17 C -0.140 4.140 18 C -0.134 4.134 19 C 0.057 3.943 20 C -0.106 4.106 21 H 0.261 0.739 22 H 0.040 0.960 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.030 0.970 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.034 0.966 37 H 0.041 0.959 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.683 -2.109 0.023 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.180 1.180 7 C -0.548 4.548 8 H 0.087 0.913 9 C -0.004 4.004 10 H 0.059 0.941 11 C -0.129 4.129 12 C -0.160 4.160 13 C -0.063 4.063 14 N -0.236 5.236 15 C -0.044 4.044 16 C -0.219 4.219 17 C -0.178 4.178 18 C -0.172 4.172 19 C -0.072 4.072 20 C -0.144 4.144 21 H 0.070 0.930 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.232 -1.603 0.264 17.309 hybrid contribution 0.769 0.362 -0.604 1.043 sum 18.002 -1.241 -0.340 18.047 Atomic orbital electron populations 1.69929 1.06361 1.26704 1.51742 1.25052 0.94596 0.99033 0.94585 0.86917 0.80453 0.83508 0.78726 1.20551 1.22365 1.18007 1.21276 0.89816 0.94165 1.49506 0.91347 1.18915 0.95223 0.94241 0.92071 0.94084 1.21315 0.95018 0.98983 0.97613 1.20698 0.95850 1.01054 0.98420 1.21033 0.98642 0.90838 0.95812 1.61535 1.13944 1.32853 1.15306 1.23335 0.86668 0.96460 0.97920 1.23754 0.98489 0.99005 1.00684 1.22739 0.96374 0.98946 0.99753 1.23097 0.95008 1.00685 0.98376 1.22054 0.96645 0.98124 0.90335 1.22340 0.91160 0.99760 1.01161 0.92968 0.94126 0.92188 0.92935 0.91603 0.95165 0.92135 0.88365 0.89589 0.91993 0.90471 0.91677 0.91434 0.89629 0.93455 0.94792 0.94001 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.52 13.96 55.43 0.77 -27.75 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 22.56 25.52 -169.99 -4.34 18.23 16 4 H -0.28 -7.07 7.10 56.52 0.40 -6.67 16 5 H -0.30 -7.66 7.11 56.52 0.40 -7.25 16 6 H -0.26 -6.43 6.16 56.52 0.35 -6.08 16 7 C -0.51 -14.55 8.48 -34.44 -0.29 -14.84 16 8 H 0.07 2.11 8.03 -52.48 -0.42 1.69 16 9 C 0.01 0.34 1.37 -92.36 -0.13 0.22 16 10 H 0.04 1.04 5.03 -51.93 -0.26 0.78 16 11 C -0.09 -1.87 5.08 -27.21 -0.14 -2.01 16 12 C -0.12 -2.09 5.53 -29.32 -0.16 -2.25 16 13 C 0.06 0.97 3.38 -6.70 -0.02 0.95 16 14 N -0.51 -8.54 4.34 -230.57 -1.00 -9.54 16 15 C 0.07 0.89 3.69 -66.90 -0.25 0.64 16 16 C -0.18 -2.05 7.30 -25.83 -0.19 -2.23 16 17 C -0.14 -1.40 8.09 -25.83 -0.21 -1.61 16 18 C -0.13 -1.60 7.49 -25.92 -0.19 -1.79 16 19 C 0.06 0.99 5.16 -4.68 -0.02 0.97 16 20 C -0.11 -2.29 5.19 -25.50 -0.13 -2.42 16 21 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 22 H 0.04 0.79 7.15 -51.93 -0.37 0.42 16 23 H 0.06 1.29 7.72 -51.93 -0.40 0.89 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.21 7.59 -51.93 -0.39 0.82 16 26 H 0.03 0.45 6.76 -51.93 -0.35 0.10 16 27 H 0.06 0.82 5.24 -51.93 -0.27 0.54 16 28 H 0.10 1.31 7.78 -51.93 -0.40 0.91 16 29 H 0.09 1.00 5.80 -51.93 -0.30 0.70 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.06 6.48 -51.92 -0.34 0.73 16 35 H 0.05 0.76 7.36 -51.93 -0.38 0.37 16 36 H 0.03 0.57 6.51 -51.93 -0.34 0.23 16 37 H 0.04 0.95 5.98 -51.93 -0.31 0.64 16 38 H 0.06 1.25 7.98 -51.93 -0.41 0.83 16 LS Contribution 274.84 15.07 4.14 4.14 Total: -1.00 -30.43 274.84 -8.52 -38.95 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -6.26 Total: -1.55 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -1.83 Total: -22.47 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -0.23 Total: -37.29 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.34 Total: 18.23 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.43 -8.52 -38.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260968008.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.793 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds