Wall clock time and date at job start Mon Mar 30 2020 03:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99561 * 2 1 4 4 H 1.48497 * 109.47081 * 264.81680 * 3 2 1 5 5 H 1.48501 * 109.47033 * 24.82064 * 3 2 1 6 6 H 1.48501 * 109.46822 * 144.81827 * 3 2 1 7 7 C 1.37870 * 120.00458 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00410 * 5.23627 * 7 2 1 9 9 C 1.50702 * 120.00095 * 185.23709 * 7 2 1 10 10 H 1.08991 * 108.64146 * 36.73333 * 9 7 2 11 11 C 1.50464 * 108.77057 * 154.98409 * 9 7 2 12 12 C 1.54503 * 108.84827 * 213.06687 * 11 9 7 13 13 C 1.45860 * 111.59858 * 282.81177 * 12 11 9 14 14 N 1.47806 * 112.92180 * 61.32195 * 13 12 11 15 15 C 1.46901 * 110.99760 * 153.87833 * 14 13 12 16 16 C 1.53780 * 113.61722 * 36.11444 * 15 14 13 17 17 C 1.53953 * 87.02249 * 220.04436 * 16 15 14 18 18 C 1.53778 * 113.61978 * 298.50381 * 15 14 13 19 19 C 1.44267 * 109.45781 * 276.74991 * 14 13 12 20 20 C 1.54064 * 111.98348 * 96.43326 * 19 14 13 21 21 H 0.96997 * 120.00666 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.57460 * 93.25720 * 11 9 7 23 23 H 1.08994 * 109.67942 * 332.94011 * 11 9 7 24 24 H 1.09002 * 109.05920 * 162.26526 * 12 11 9 25 25 H 1.09003 * 109.05771 * 43.35403 * 12 11 9 26 26 H 1.09005 * 108.79455 * 300.44078 * 13 12 11 27 27 H 1.08996 * 108.70904 * 182.15256 * 13 12 11 28 28 H 1.09004 * 112.84659 * 167.30859 * 15 14 13 29 29 H 1.09005 * 113.61095 * 334.56196 * 16 15 14 30 30 H 1.09002 * 113.61832 * 105.46298 * 16 15 14 31 31 H 1.08994 * 113.53921 * 270.81256 * 17 16 15 32 32 H 1.09001 * 113.66746 * 139.92216 * 17 16 15 33 33 H 1.08995 * 113.61748 * 254.53360 * 18 15 14 34 34 H 1.09009 * 113.61262 * 25.43318 * 18 15 14 35 35 H 1.09002 * 108.97576 * 217.08174 * 19 14 13 36 36 H 1.09003 * 108.97629 * 335.78872 * 19 14 13 37 37 H 1.09003 * 108.91470 * 79.63456 * 20 19 14 38 38 H 1.08999 * 108.91651 * 198.18233 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6060 1.9833 -1.3943 5 1 1.3959 2.6818 0.5877 6 1 3.4876 1.4744 0.8067 7 6 2.0046 -1.1939 0.0005 8 1 1.4681 -2.1274 -0.0844 9 6 3.5069 -1.1965 0.1197 10 1 3.8038 -0.3982 0.7997 11 6 3.9443 -2.5142 0.6995 12 6 5.2007 -2.2845 1.5689 13 6 6.3971 -2.1204 0.7508 14 7 6.3216 -0.9523 -0.1517 15 6 7.6635 -0.4504 -0.4763 16 6 8.7178 -1.5603 -0.6223 17 6 9.6908 -0.6222 0.1150 18 6 8.4537 0.0338 0.7508 19 6 5.6018 -1.3151 -1.3482 20 6 4.1156 -0.9169 -1.2702 21 1 -0.4851 0.8400 -0.0004 22 1 4.1804 -3.2079 -0.1074 23 1 3.1453 -2.9279 1.3146 24 1 5.3368 -3.1398 2.2308 25 1 5.0569 -1.3884 2.1725 26 1 6.5380 -3.0193 0.1504 27 1 7.2572 -2.0004 1.4093 28 1 7.6609 0.2608 -1.3024 29 1 8.4782 -2.4661 -0.0652 30 1 9.0012 -1.7602 -1.6556 31 1 10.2436 0.0413 -0.5499 32 1 10.3316 -1.1334 0.8334 33 1 8.5243 1.1190 0.8244 34 1 8.1418 -0.4353 1.6840 35 1 6.0587 -0.8148 -2.2021 36 1 5.6729 -2.3934 -1.4914 37 1 4.0229 0.1469 -1.4891 38 1 3.5591 -1.4798 -2.0196 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260968008.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:41 Heat of formation + Delta-G solvation = 1.437945 kcal Electronic energy + Delta-G solvation = -16349.947979 eV Core-core repulsion = 13998.897178 eV Total energy + Delta-G solvation = -2351.050801 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.12039 -38.36395 -35.24620 -33.73914 -33.07069 -28.50959 -26.91174 -26.48585 -24.79369 -24.05594 -21.88888 -20.24703 -19.66200 -18.83049 -17.53342 -16.69776 -16.28007 -15.81656 -15.43905 -15.07286 -14.64037 -14.44922 -13.82810 -13.68657 -13.43049 -13.16897 -13.12053 -12.87838 -12.48641 -12.20917 -12.08288 -11.74052 -11.57640 -11.49252 -11.33390 -11.29331 -10.99402 -10.82783 -10.70048 -10.53200 -9.00300 -8.25815 -6.26233 1.34152 1.36626 1.50484 2.38078 3.04580 3.10595 3.76901 3.81343 3.96810 3.99573 4.06885 4.23264 4.41543 4.47265 4.56498 4.69153 4.71855 4.76363 4.82941 4.85997 4.93013 4.99366 5.04038 5.10043 5.14905 5.17810 5.30223 5.32987 5.47639 5.50653 5.56022 5.73655 5.82319 5.94542 6.34316 6.40430 6.47171 6.82694 7.38882 8.91405 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.038195 B = 0.008603 C = 0.007869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.897544 B = 3253.880671 C = 3557.588232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.009 3.991 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.295 1.295 6 H -0.244 1.244 7 C -0.513 4.513 8 H 0.028 0.972 9 C 0.021 3.979 10 H 0.028 0.972 11 C -0.091 4.091 12 C -0.113 4.113 13 C 0.064 3.936 14 N -0.538 5.538 15 C 0.054 3.946 16 C -0.173 4.173 17 C -0.127 4.127 18 C -0.136 4.136 19 C 0.068 3.932 20 C -0.104 4.104 21 H 0.262 0.738 22 H 0.049 0.951 23 H 0.037 0.963 24 H 0.079 0.921 25 H 0.050 0.950 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.043 0.957 37 H 0.028 0.972 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.143 -1.879 0.046 21.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.187 4.187 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.222 1.222 6 H -0.168 1.168 7 C -0.551 4.551 8 H 0.046 0.954 9 C 0.002 3.998 10 H 0.046 0.954 11 C -0.129 4.129 12 C -0.151 4.151 13 C -0.062 4.062 14 N -0.261 5.261 15 C -0.054 4.054 16 C -0.212 4.212 17 C -0.164 4.164 18 C -0.174 4.174 19 C -0.060 4.060 20 C -0.143 4.143 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.056 0.944 24 H 0.098 0.902 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.116 0.884 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.046 0.954 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 20.723 -1.385 0.286 20.772 hybrid contribution -0.381 0.218 -0.598 0.742 sum 20.343 -1.166 -0.312 20.379 Atomic orbital electron populations 1.70075 1.08167 1.27697 1.53820 1.25882 0.95315 1.02844 0.94612 0.85875 0.79331 0.78907 0.79282 1.19497 1.22217 1.16803 1.21663 0.92674 0.92520 1.48237 0.95399 1.18861 0.91916 0.95641 0.93415 0.95381 1.21224 0.96353 0.97199 0.98132 1.20631 0.94737 1.01506 0.98220 1.21015 0.98299 0.90955 0.95953 1.61421 1.16030 1.33577 1.15040 1.23496 0.85536 0.97541 0.98876 1.23691 0.97714 0.98450 1.01364 1.22695 0.95698 0.98386 0.99658 1.23116 0.95759 1.00880 0.97626 1.21819 0.93683 0.98783 0.91742 1.22196 0.94498 0.98711 0.98892 0.92881 0.93189 0.94372 0.90219 0.93170 0.94046 0.89756 0.88369 0.89557 0.91335 0.89342 0.90386 0.91434 0.90068 0.91670 0.93895 0.95365 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.10 13.96 21.44 0.30 -61.80 16 2 C 0.01 0.57 5.47 84.65 0.46 1.03 16 3 Si 0.94 47.29 25.52 68.60 1.75 49.04 16 4 H -0.27 -13.03 7.10 99.48 0.71 -12.33 16 5 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 6 H -0.24 -11.73 6.16 99.48 0.61 -11.12 16 7 C -0.51 -30.31 8.48 25.60 0.22 -30.10 16 8 H 0.03 1.82 8.03 -2.91 -0.02 1.79 16 9 C 0.02 0.98 1.37 -11.92 -0.02 0.97 16 10 H 0.03 1.41 5.03 -2.39 -0.01 1.40 16 11 C -0.09 -3.70 5.08 30.28 0.15 -3.55 16 12 C -0.11 -3.61 5.53 28.92 0.16 -3.45 16 13 C 0.06 1.75 3.38 83.94 0.28 2.03 16 14 N -0.54 -16.33 4.34 -883.39 -3.84 -20.16 16 15 C 0.05 1.27 3.69 45.44 0.17 1.44 16 16 C -0.17 -3.22 7.30 31.18 0.23 -2.99 16 17 C -0.13 -2.00 8.09 31.18 0.25 -1.75 16 18 C -0.14 -2.78 7.49 31.12 0.23 -2.55 16 19 C 0.07 2.23 5.16 87.15 0.45 2.68 16 20 C -0.10 -4.44 5.19 31.39 0.16 -4.27 16 21 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 22 H 0.05 1.90 7.15 -2.39 -0.02 1.88 16 23 H 0.04 1.67 7.72 -2.39 -0.02 1.65 16 24 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.05 1.76 7.59 -2.39 -0.02 1.74 16 26 H 0.04 1.06 6.76 -2.38 -0.02 1.04 16 27 H 0.08 1.93 5.24 -2.39 -0.01 1.91 16 28 H 0.10 2.31 7.78 -2.39 -0.02 2.29 16 29 H 0.09 1.62 5.80 -2.38 -0.01 1.61 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.08 1.73 6.48 -2.38 -0.02 1.72 16 35 H 0.06 1.89 7.36 -2.39 -0.02 1.87 16 36 H 0.04 1.32 6.51 -2.39 -0.02 1.31 16 37 H 0.03 1.25 5.98 -2.39 -0.01 1.23 16 38 H 0.04 1.93 7.98 -2.39 -0.02 1.91 16 Total: -1.00 -67.25 274.84 1.89 -65.36 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 0.93 Total: 8.07 kcal Atomic # 6 Polarization: -43.26 SS G_CDS: 2.75 Total: -40.50 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -3.54 Total: -81.97 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.75 Total: 49.04 kcal Total: -67.25 1.89 -65.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260968008.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.797 kcal (2) G-P(sol) polarization free energy of solvation -67.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds