Wall clock time and date at job start Mon Mar 30 2020 02:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00068 * 2 1 4 4 H 1.48505 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47428 * 299.99639 * 3 2 1 6 6 H 1.48501 * 109.47350 * 60.00184 * 3 2 1 7 7 C 1.37874 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00262 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99888 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47122 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47320 * 180.02562 * 10 9 7 12 12 C 1.53099 * 109.52781 * 294.67694 * 11 10 9 13 13 C 1.53034 * 109.29509 * 182.43453 * 12 11 10 14 14 N 1.46847 * 109.51345 * 59.18740 * 13 12 11 15 15 C 1.46898 * 110.99897 * 174.16738 * 14 13 12 16 16 C 1.52999 * 117.50000 * 248.61536 * 15 14 13 17 17 C 1.52999 * 60.00272 * 252.51270 * 16 15 14 18 18 C 1.46854 * 111.19790 * 298.26320 * 14 13 12 19 19 C 1.53039 * 109.52227 * 61.74204 * 18 14 13 20 20 H 0.97005 * 119.99228 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.47006 * 60.00194 * 9 7 2 22 22 H 1.09003 * 109.47464 * 299.99809 * 9 7 2 23 23 H 1.09004 * 109.47103 * 60.00139 * 10 9 7 24 24 H 1.09001 * 109.47454 * 300.00365 * 10 9 7 25 25 H 1.09002 * 109.52267 * 54.87293 * 11 10 9 26 26 H 1.09007 * 109.48839 * 62.49095 * 12 11 10 27 27 H 1.09009 * 109.50682 * 302.38881 * 12 11 10 28 28 H 1.09002 * 109.46271 * 299.17460 * 13 12 11 29 29 H 1.08994 * 109.46242 * 179.19760 * 13 12 11 30 30 H 1.08997 * 115.55242 * 34.33050 * 15 14 13 31 31 H 1.08999 * 117.49599 * 0.02562 * 16 15 14 32 32 H 1.08995 * 117.49715 * 145.01671 * 16 15 14 33 33 H 1.09000 * 117.49718 * 252.51107 * 17 16 15 34 34 H 1.09002 * 117.49753 * 107.49143 * 17 16 15 35 35 H 1.08993 * 109.46229 * 181.76227 * 18 14 13 36 36 H 1.09008 * 109.45803 * 301.73838 * 18 14 13 37 37 H 1.08994 * 109.50227 * 60.75933 * 19 18 14 38 38 H 1.08998 * 109.50241 * 180.83988 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9870 0.0033 12 6 0.7021 -5.1282 1.3143 13 6 -0.0120 -6.4815 1.3352 14 7 0.9771 -7.5601 1.2139 15 6 0.3428 -8.8759 1.3689 16 6 0.6819 -9.6800 2.6256 17 6 1.2419 -10.1099 1.2683 18 6 1.7042 -7.4730 -0.0590 19 6 2.4694 -6.1492 -0.1214 20 1 -0.4849 0.8402 -0.0004 21 1 0.6240 -2.5574 -0.8880 22 1 0.6246 -2.5563 0.8920 23 1 2.8718 -3.6036 0.8927 24 1 2.8719 -3.6052 -0.8872 25 1 0.7864 -5.0074 -0.8372 26 1 -0.0335 -4.3273 1.3886 27 1 1.3926 -5.0680 2.1556 28 1 -0.7124 -6.5355 0.5017 29 1 -0.5554 -6.5909 2.2737 30 1 -0.6707 -8.9585 0.9764 31 1 1.3753 -9.2324 3.3376 32 1 -0.1088 -10.2915 3.0604 33 1 0.8197 -11.0042 0.8100 34 1 2.3041 -9.9452 1.0871 35 1 2.4071 -8.3027 -0.1332 36 1 0.9957 -7.5222 -0.8860 37 1 3.1876 -6.1051 0.6973 38 1 2.9970 -6.0783 -1.0726 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260979566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:03 Heat of formation + Delta-G solvation = -16.250084 kcal Electronic energy + Delta-G solvation = -15369.975381 eV Core-core repulsion = 13018.157570 eV Total energy + Delta-G solvation = -2351.817812 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.36392 -37.82949 -35.61119 -34.00641 -31.85633 -30.93963 -27.33755 -24.80091 -23.98815 -22.93075 -22.18851 -21.25142 -20.57710 -18.48018 -17.57200 -16.52662 -16.07314 -15.66999 -15.48922 -15.10408 -14.74065 -14.40663 -14.27142 -13.76692 -13.38208 -13.08942 -13.00956 -12.81158 -12.48831 -12.31055 -12.12418 -11.93673 -11.77644 -11.68340 -11.28747 -11.24411 -11.10893 -10.86373 -10.71244 -10.51527 -9.23462 -8.19332 -6.30173 1.39166 1.39450 1.53007 2.41159 2.80706 2.93972 3.13463 3.88815 3.92679 3.93640 4.05010 4.11897 4.29583 4.34322 4.49221 4.52251 4.62942 4.67383 4.78733 4.81922 4.85945 4.94670 4.95188 5.07201 5.12295 5.14402 5.24658 5.28287 5.35359 5.41865 5.48825 5.59463 5.81966 5.88631 6.13121 6.25820 6.28246 6.87618 7.38904 8.92530 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.069566 B = 0.004774 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.398437 B = 5863.655845 C = 6053.690532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.026 3.974 10 C -0.092 4.092 11 C -0.083 4.083 12 C -0.106 4.106 13 C 0.069 3.931 14 N -0.519 5.519 15 C -0.015 4.015 16 C -0.160 4.160 17 C -0.164 4.164 18 C 0.063 3.937 19 C -0.105 4.105 20 H 0.263 0.737 21 H -0.015 1.015 22 H -0.002 1.002 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.028 0.972 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.028 0.972 37 H 0.066 0.934 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.054 -18.963 2.128 19.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.130 4.130 11 C -0.101 4.101 12 C -0.144 4.144 13 C -0.059 4.059 14 N -0.244 5.244 15 C -0.123 4.123 16 C -0.198 4.198 17 C -0.201 4.201 18 C -0.064 4.064 19 C -0.143 4.143 20 H 0.072 0.928 21 H 0.003 0.997 22 H 0.016 0.984 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.047 0.953 37 H 0.084 0.916 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.257 -18.795 2.498 19.094 hybrid contribution -0.596 1.240 -0.690 1.539 sum 1.661 -17.555 1.808 17.726 Atomic orbital electron populations 1.70113 1.07781 1.27602 1.51936 1.25978 0.95771 1.03319 0.94783 0.85415 0.79080 0.78829 0.77828 1.18650 1.20304 1.20297 1.21788 0.93491 0.92685 1.50211 0.92464 1.19033 0.94446 0.92992 0.94671 1.21476 0.97751 0.93671 1.00101 1.21160 0.97129 0.94702 0.97144 1.21560 0.99235 0.95805 0.97762 1.21968 0.92829 0.90343 1.00717 1.61725 1.27150 1.01295 1.34240 1.22500 0.97451 0.87280 1.05089 1.23093 1.03610 1.01979 0.91133 1.23116 0.99546 0.96827 1.00628 1.22072 0.96992 0.98123 0.89252 1.21611 0.97540 0.92856 1.02247 0.92836 0.99705 0.98406 0.93416 0.93367 0.93155 0.93074 0.91981 0.95334 0.90288 0.89328 0.89118 0.87376 0.87070 0.88508 0.89247 0.95338 0.91553 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.05 13.29 21.45 0.28 -57.76 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.96 45.22 29.54 68.60 2.03 47.25 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 7 C -0.54 -31.97 9.11 25.60 0.23 -31.74 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 9 C 0.03 1.39 4.73 29.85 0.14 1.53 16 10 C -0.09 -3.96 4.62 30.59 0.14 -3.81 16 11 C -0.08 -2.92 2.25 -10.72 -0.02 -2.94 16 12 C -0.11 -3.64 5.07 30.64 0.16 -3.48 16 13 C 0.07 1.97 5.43 86.32 0.47 2.44 16 14 N -0.52 -13.26 4.80 -871.11 -4.18 -17.44 16 15 C -0.01 -0.30 5.30 44.92 0.24 -0.06 16 16 C -0.16 -2.78 10.46 30.59 0.32 -2.46 16 17 C -0.16 -2.64 9.70 30.60 0.30 -2.34 16 18 C 0.06 1.54 5.34 86.32 0.46 2.00 16 19 C -0.10 -2.94 5.38 30.65 0.16 -2.78 16 20 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 21 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 22 H 0.00 -0.14 6.64 -2.39 -0.02 -0.15 16 23 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 24 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.05 2.00 6.70 -2.38 -0.02 1.98 16 27 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 2.09 8.12 -2.39 -0.02 2.08 16 30 H 0.09 1.78 8.08 -2.39 -0.02 1.77 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.10 1.60 7.23 -2.39 -0.02 1.58 16 35 H 0.09 1.85 6.68 -2.39 -0.02 1.83 16 36 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -64.59 299.02 2.18 -62.41 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.99 Total: 8.80 kcal Atomic # 6 Polarization: -46.31 SS G_CDS: 3.06 Total: -43.26 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -3.90 Total: -75.20 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -64.59 2.18 -62.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260979566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.159 kcal (2) G-P(sol) polarization free energy of solvation -64.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds