Wall clock time and date at job start Mon Mar 30 2020 03:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00146 * 2 1 4 4 H 1.48499 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46771 * 299.99435 * 3 2 1 6 6 H 1.48494 * 109.47068 * 59.99526 * 3 2 1 7 7 C 1.37886 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99878 * 206.46081 * 7 2 1 9 9 C 1.50697 * 119.99711 * 26.46188 * 7 2 1 10 10 C 1.52999 * 107.98451 * 56.98894 * 9 7 2 11 11 N 1.46907 * 109.46839 * 291.26639 * 10 9 7 12 12 C 1.50896 * 108.34869 * 300.21857 * 9 7 2 13 13 C 1.52766 * 110.71458 * 288.07800 * 12 9 7 14 14 C 1.53022 * 107.78905 * 297.76193 * 13 12 9 15 15 C 1.50599 * 110.68473 * 62.31202 * 14 13 12 16 16 H 1.09005 * 107.40729 * 189.68519 * 15 14 13 17 17 C 1.54179 * 112.74083 * 70.97367 * 15 14 13 18 18 C 1.55288 * 101.54649 * 192.16334 * 17 15 14 19 19 C 1.54305 * 104.40512 * 37.48334 * 18 17 15 20 20 C 1.51273 * 108.25087 * 173.97080 * 9 7 2 21 21 H 1.08993 * 109.70169 * 210.16356 * 20 9 7 22 22 H 0.96996 * 120.00012 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47035 * 51.25833 * 10 9 7 24 24 H 1.08994 * 109.47302 * 171.26556 * 10 9 7 25 25 H 1.00897 * 111.00043 * 180.02562 * 11 10 9 26 26 H 1.00901 * 110.99748 * 303.95433 * 11 10 9 27 27 H 1.09007 * 109.34428 * 167.71742 * 12 9 7 28 28 H 1.09004 * 109.16627 * 48.32119 * 12 9 7 29 29 H 1.09001 * 109.79726 * 178.19253 * 13 12 9 30 30 H 1.09002 * 109.85129 * 57.36154 * 13 12 9 31 31 H 1.08999 * 109.23405 * 302.00460 * 14 13 12 32 32 H 1.09000 * 109.23674 * 182.62237 * 14 13 12 33 33 H 1.08998 * 111.01171 * 310.22535 * 17 15 14 34 34 H 1.08997 * 111.01601 * 74.09696 * 17 15 14 35 35 H 1.09002 * 110.44514 * 278.75665 * 18 17 15 36 36 H 1.08996 * 110.45514 * 156.21631 * 18 17 15 37 37 H 1.08996 * 110.03688 * 220.27032 * 19 18 17 38 38 H 1.09001 * 110.03330 * 98.83560 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 2.9997 -1.2430 0.4173 9 6 1.3694 -2.4311 -0.5805 10 6 0.9906 -2.1303 -2.0320 11 7 -0.1080 -1.1553 -2.0594 12 6 0.1000 -2.7169 0.1837 13 6 0.4180 -3.2333 1.5858 14 6 1.1829 -4.5503 1.4366 15 6 2.4887 -4.3288 0.7199 16 1 2.9043 -5.3097 0.4888 17 6 3.5187 -3.5686 1.5792 18 6 4.5982 -3.2071 0.5230 19 6 3.7931 -2.8767 -0.7512 20 6 2.4003 -3.5381 -0.5796 21 1 2.2110 -4.2171 -1.4109 22 1 -0.4850 0.8400 -0.0004 23 1 1.8541 -1.7193 -2.5551 24 1 0.6723 -3.0501 -2.5225 25 1 -0.3770 -0.9402 -3.0077 26 1 -0.8981 -1.4858 -1.5258 27 1 -0.4823 -3.4673 -0.3512 28 1 -0.4840 -1.8000 0.2633 29 1 -0.5078 -3.4043 2.1351 30 1 1.0334 -2.5072 2.1170 31 1 0.5764 -5.2553 0.8682 32 1 1.3816 -4.9641 2.4252 33 1 3.0793 -2.6700 2.0122 34 1 3.9318 -4.2128 2.3554 35 1 5.2581 -4.0566 0.3469 36 1 5.1720 -2.3387 0.8467 37 1 4.2956 -3.2867 -1.6272 38 1 3.6835 -1.7971 -0.8543 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260984170.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:01 Heat of formation + Delta-G solvation = 16.395431 kcal Electronic energy + Delta-G solvation = -17323.350046 eV Core-core repulsion = 14972.947850 eV Total energy + Delta-G solvation = -2350.402196 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.48216 -35.01822 -33.05329 -31.39658 -29.90209 -27.74803 -25.85703 -24.74036 -23.10467 -21.08145 -19.54767 -19.33137 -17.36821 -15.61714 -15.13316 -14.39307 -14.25156 -13.90863 -13.18456 -13.10192 -12.94885 -12.16350 -12.11819 -11.81969 -11.33464 -11.08439 -10.69095 -10.49544 -10.37227 -10.27028 -10.18595 -10.08858 -9.93587 -9.61906 -9.30857 -9.03031 -8.76941 -8.59651 -8.44197 -7.84286 -6.72317 -5.66010 -3.56623 3.47057 3.57070 3.60723 4.69799 5.44475 5.51325 5.58711 5.60216 6.00397 6.06580 6.13444 6.20128 6.41203 6.43593 6.51464 6.54634 6.60481 6.68880 6.71943 6.76127 6.82215 6.86638 6.99323 7.03543 7.06726 7.17142 7.22062 7.42530 7.56641 7.67232 7.70746 7.94757 8.17078 8.57384 8.69590 8.90454 8.98838 9.29338 9.97004 11.28578 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025719 B = 0.014623 C = 0.012479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.416044 B = 1914.379442 C = 2243.242779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.105 3.895 3 Si 0.858 3.142 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.296 1.296 7 C -0.533 4.533 8 H 0.067 0.933 9 C 0.079 3.921 10 C 0.087 3.913 11 N -0.796 5.796 12 C -0.123 4.123 13 C -0.099 4.099 14 C -0.105 4.105 15 C -0.069 4.069 16 H 0.035 0.965 17 C -0.113 4.113 18 C -0.118 4.118 19 C -0.135 4.135 20 C -0.060 4.060 21 H 0.033 0.967 22 H 0.250 0.750 23 H 0.044 0.956 24 H -0.031 1.031 25 H 0.287 0.713 26 H 0.341 0.659 27 H -0.007 1.007 28 H 0.136 0.864 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.027 0.973 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.900 -5.640 0.269 5.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.101 4.101 3 Si 0.687 3.313 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.223 1.223 7 C -0.569 4.569 8 H 0.085 0.915 9 C 0.079 3.921 10 C -0.044 4.044 11 N -0.326 5.326 12 C -0.161 4.161 13 C -0.136 4.136 14 C -0.143 4.143 15 C -0.087 4.087 16 H 0.054 0.946 17 C -0.150 4.150 18 C -0.156 4.156 19 C -0.172 4.172 20 C -0.079 4.079 21 H 0.052 0.948 22 H 0.062 0.938 23 H 0.063 0.937 24 H -0.014 1.014 25 H 0.097 0.903 26 H 0.158 0.842 27 H 0.012 0.988 28 H 0.153 0.847 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.233 -5.036 0.619 5.544 hybrid contribution 0.053 -0.032 -0.737 0.739 sum 2.286 -5.069 -0.118 5.562 Atomic orbital electron populations 1.69431 1.06316 1.24808 1.44458 1.24539 0.93807 0.97796 0.93933 0.87149 0.80993 0.86289 0.76869 1.20423 1.21477 1.22272 1.21034 1.01315 0.92398 1.42185 0.91500 1.17386 0.91418 0.92600 0.90733 1.22210 0.93590 0.89667 0.98960 1.59216 1.12348 1.48302 1.12764 1.21794 0.99555 1.01850 0.92889 1.21276 0.97442 0.95458 0.99437 1.20998 0.96477 0.98625 0.98161 1.20741 0.94949 0.96984 0.96068 0.94636 1.22488 0.95703 1.00454 0.96397 1.22294 0.97185 0.99084 0.97021 1.23064 0.94150 1.05439 0.94526 1.21074 0.96637 0.96003 0.94206 0.94835 0.93839 0.93719 1.01355 0.90320 0.84210 0.98816 0.84696 0.95116 0.91202 0.93912 0.94097 0.89805 0.93896 0.93894 0.92924 0.95436 0.86678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.78 7.86 55.43 0.44 -20.34 16 2 C 0.11 2.69 4.49 -17.82 -0.08 2.61 16 3 Si 0.86 20.70 29.61 -169.99 -5.03 15.66 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.53 -13.13 4.77 -34.44 -0.16 -13.30 16 8 H 0.07 1.68 4.44 -52.49 -0.23 1.45 16 9 C 0.08 1.79 0.40 -157.59 -0.06 1.73 16 10 C 0.09 1.96 5.37 -3.82 -0.02 1.94 16 11 N -0.80 -17.67 6.32 -10.37 -0.07 -17.74 16 12 C -0.12 -2.78 3.44 -27.91 -0.10 -2.88 16 13 C -0.10 -2.05 5.83 -26.84 -0.16 -2.20 16 14 C -0.11 -1.95 5.37 -27.92 -0.15 -2.10 16 15 C -0.07 -1.31 2.43 -91.52 -0.22 -1.53 16 16 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 17 C -0.11 -2.08 5.84 -24.90 -0.15 -2.22 16 18 C -0.12 -2.13 6.36 -24.84 -0.16 -2.29 16 19 C -0.13 -2.70 5.64 -24.92 -0.14 -2.84 16 20 C -0.06 -1.24 2.53 -90.68 -0.23 -1.47 16 21 H 0.03 0.69 7.67 -51.93 -0.40 0.29 16 22 H 0.25 6.34 8.31 -40.82 -0.34 6.00 16 23 H 0.04 1.04 8.08 -51.93 -0.42 0.62 16 24 H -0.03 -0.69 7.91 -51.93 -0.41 -1.10 16 25 H 0.29 5.74 9.08 -39.29 -0.36 5.39 16 26 H 0.34 7.65 6.44 -39.29 -0.25 7.39 16 27 H -0.01 -0.15 8.08 -51.92 -0.42 -0.57 16 28 H 0.14 3.35 3.97 -51.93 -0.21 3.14 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.57 6.38 -51.93 -0.33 1.24 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.71 5.93 -51.93 -0.31 1.41 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.12 2.59 4.94 -51.93 -0.26 2.33 16 LS Contribution 263.93 15.07 3.98 3.98 Total: -1.00 -24.81 263.93 -8.42 -33.23 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -6.11 Total: 9.76 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -1.63 Total: -24.55 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.37 Total: -38.08 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -24.81 -8.42 -33.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984170.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.627 kcal (2) G-P(sol) polarization free energy of solvation -24.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds