Wall clock time and date at job start Mon Mar 30 2020 03:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00146 * 2 1 4 4 H 1.48499 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46771 * 299.99435 * 3 2 1 6 6 H 1.48494 * 109.47068 * 59.99526 * 3 2 1 7 7 C 1.37886 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99878 * 206.46081 * 7 2 1 9 9 C 1.50697 * 119.99711 * 26.46188 * 7 2 1 10 10 C 1.52999 * 107.98451 * 56.98894 * 9 7 2 11 11 N 1.46907 * 109.46839 * 291.26639 * 10 9 7 12 12 C 1.50896 * 108.34869 * 300.21857 * 9 7 2 13 13 C 1.52766 * 110.71458 * 288.07800 * 12 9 7 14 14 C 1.53022 * 107.78905 * 297.76193 * 13 12 9 15 15 C 1.50599 * 110.68473 * 62.31202 * 14 13 12 16 16 H 1.09005 * 107.40729 * 189.68519 * 15 14 13 17 17 C 1.54179 * 112.74083 * 70.97367 * 15 14 13 18 18 C 1.55288 * 101.54649 * 192.16334 * 17 15 14 19 19 C 1.54305 * 104.40512 * 37.48334 * 18 17 15 20 20 C 1.51273 * 108.25087 * 173.97080 * 9 7 2 21 21 H 1.08993 * 109.70169 * 210.16356 * 20 9 7 22 22 H 0.96996 * 120.00012 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47035 * 51.25833 * 10 9 7 24 24 H 1.08994 * 109.47302 * 171.26556 * 10 9 7 25 25 H 1.00897 * 111.00043 * 180.02562 * 11 10 9 26 26 H 1.00901 * 110.99748 * 303.95433 * 11 10 9 27 27 H 1.09007 * 109.34428 * 167.71742 * 12 9 7 28 28 H 1.09004 * 109.16627 * 48.32119 * 12 9 7 29 29 H 1.09001 * 109.79726 * 178.19253 * 13 12 9 30 30 H 1.09002 * 109.85129 * 57.36154 * 13 12 9 31 31 H 1.08999 * 109.23405 * 302.00460 * 14 13 12 32 32 H 1.09000 * 109.23674 * 182.62237 * 14 13 12 33 33 H 1.08998 * 111.01171 * 310.22535 * 17 15 14 34 34 H 1.08997 * 111.01601 * 74.09696 * 17 15 14 35 35 H 1.09002 * 110.44514 * 278.75665 * 18 17 15 36 36 H 1.08996 * 110.45514 * 156.21631 * 18 17 15 37 37 H 1.08996 * 110.03688 * 220.27032 * 19 18 17 38 38 H 1.09001 * 110.03330 * 98.83560 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 2.9997 -1.2430 0.4173 9 6 1.3694 -2.4311 -0.5805 10 6 0.9906 -2.1303 -2.0320 11 7 -0.1080 -1.1553 -2.0594 12 6 0.1000 -2.7169 0.1837 13 6 0.4180 -3.2333 1.5858 14 6 1.1829 -4.5503 1.4366 15 6 2.4887 -4.3288 0.7199 16 1 2.9043 -5.3097 0.4888 17 6 3.5187 -3.5686 1.5792 18 6 4.5982 -3.2071 0.5230 19 6 3.7931 -2.8767 -0.7512 20 6 2.4003 -3.5381 -0.5796 21 1 2.2110 -4.2171 -1.4109 22 1 -0.4850 0.8400 -0.0004 23 1 1.8541 -1.7193 -2.5551 24 1 0.6723 -3.0501 -2.5225 25 1 -0.3770 -0.9402 -3.0077 26 1 -0.8981 -1.4858 -1.5258 27 1 -0.4823 -3.4673 -0.3512 28 1 -0.4840 -1.8000 0.2633 29 1 -0.5078 -3.4043 2.1351 30 1 1.0334 -2.5072 2.1170 31 1 0.5764 -5.2553 0.8682 32 1 1.3816 -4.9641 2.4252 33 1 3.0793 -2.6700 2.0122 34 1 3.9318 -4.2128 2.3554 35 1 5.2581 -4.0566 0.3469 36 1 5.1720 -2.3387 0.8467 37 1 4.2956 -3.2867 -1.6272 38 1 3.6835 -1.7971 -0.8543 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260984170.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:01 Heat of formation + Delta-G solvation = 3.878070 kcal Electronic energy + Delta-G solvation = -17323.892840 eV Core-core repulsion = 14972.947850 eV Total energy + Delta-G solvation = -2350.944989 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.11311 -36.71673 -34.65263 -33.31154 -31.61152 -29.32206 -27.47993 -26.56973 -24.85070 -22.66956 -21.28555 -20.90280 -19.04847 -17.38845 -16.85700 -16.15998 -15.97410 -15.56777 -14.86961 -14.82087 -14.58938 -13.87724 -13.81150 -13.50953 -13.09080 -12.72832 -12.60319 -12.37938 -11.99479 -11.93805 -11.74848 -11.73243 -11.54196 -11.18877 -11.02299 -10.70738 -10.55822 -10.30426 -10.17148 -9.73638 -8.52590 -7.60386 -5.51490 1.49889 1.58832 1.62863 2.72228 3.58763 3.96032 4.02203 4.10923 4.37743 4.53153 4.61231 4.67061 4.78300 4.87784 4.95575 4.98276 5.03162 5.05465 5.09706 5.17812 5.24034 5.30518 5.34996 5.39548 5.52918 5.59750 5.65357 5.78311 5.87356 5.98396 6.02836 6.11768 6.30929 6.71720 6.92339 7.02550 7.24742 7.38507 7.99849 9.30621 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025719 B = 0.014623 C = 0.012479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.416044 B = 1914.379442 C = 2243.242779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.074 3.926 3 Si 0.894 3.106 4 H -0.282 1.282 5 H -0.299 1.299 6 H -0.301 1.301 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.077 3.923 10 C 0.090 3.910 11 N -0.805 5.805 12 C -0.121 4.121 13 C -0.096 4.096 14 C -0.100 4.100 15 C -0.071 4.071 16 H 0.055 0.945 17 C -0.110 4.110 18 C -0.114 4.114 19 C -0.134 4.134 20 C -0.065 4.065 21 H 0.033 0.967 22 H 0.245 0.755 23 H 0.031 0.969 24 H -0.024 1.024 25 H 0.299 0.701 26 H 0.340 0.660 27 H -0.006 1.006 28 H 0.114 0.886 29 H 0.039 0.961 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.039 0.961 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.596 -7.259 0.619 7.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.131 4.131 3 Si 0.724 3.276 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.228 1.228 7 C -0.563 4.563 8 H 0.078 0.922 9 C 0.077 3.923 10 C -0.041 4.041 11 N -0.336 5.336 12 C -0.158 4.158 13 C -0.133 4.133 14 C -0.138 4.138 15 C -0.089 4.089 16 H 0.073 0.927 17 C -0.147 4.147 18 C -0.152 4.152 19 C -0.171 4.171 20 C -0.084 4.084 21 H 0.052 0.948 22 H 0.056 0.944 23 H 0.049 0.951 24 H -0.006 1.006 25 H 0.110 0.890 26 H 0.157 0.843 27 H 0.012 0.988 28 H 0.132 0.868 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.934 -6.651 0.967 7.333 hybrid contribution -0.164 0.486 -0.882 1.020 sum 2.770 -6.165 0.085 6.759 Atomic orbital electron populations 1.69564 1.06361 1.24421 1.45364 1.24903 0.94333 0.99012 0.94850 0.86616 0.80178 0.84936 0.75902 1.20776 1.22626 1.22816 1.21185 1.00843 0.93129 1.41166 0.92234 1.17423 0.91851 0.92629 0.90424 1.22126 0.93177 0.89847 0.98972 1.59121 1.12325 1.48400 1.13718 1.21656 0.99196 1.00891 0.94094 1.21192 0.97861 0.96259 0.98000 1.20957 0.96029 0.97290 0.99518 1.20767 0.95427 0.97584 0.95160 0.92690 1.22429 0.95584 0.99753 0.96942 1.22278 0.97162 0.99998 0.95717 1.22933 0.94489 1.03416 0.96245 1.21089 0.96203 0.95610 0.95467 0.94809 0.94399 0.95078 1.00642 0.89002 0.84324 0.98755 0.86848 0.94233 0.93385 0.93206 0.91905 0.92454 0.91341 0.91441 0.93131 0.94266 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.12 7.86 21.45 0.17 -41.95 16 2 C 0.07 3.77 4.49 84.66 0.38 4.15 16 3 Si 0.89 42.90 29.61 68.60 2.03 44.94 16 4 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 5 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 6 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 7 C -0.53 -25.90 4.77 25.60 0.12 -25.78 16 8 H 0.06 3.00 4.44 -2.91 -0.01 2.99 16 9 C 0.08 3.44 0.40 -54.18 -0.02 3.41 16 10 C 0.09 4.02 5.37 86.30 0.46 4.48 16 11 N -0.80 -35.55 6.32 -186.71 -1.18 -36.73 16 12 C -0.12 -5.35 3.44 29.83 0.10 -5.24 16 13 C -0.10 -3.84 5.83 30.52 0.18 -3.66 16 14 C -0.10 -3.44 5.37 29.82 0.16 -3.28 16 15 C -0.07 -2.47 2.43 -11.38 -0.03 -2.50 16 16 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 17 C -0.11 -3.74 5.84 31.78 0.19 -3.55 16 18 C -0.11 -3.82 6.36 31.82 0.20 -3.62 16 19 C -0.13 -5.13 5.64 31.77 0.18 -4.95 16 20 C -0.06 -2.56 2.53 -10.83 -0.03 -2.58 16 21 H 0.03 1.32 7.67 -2.39 -0.02 1.30 16 22 H 0.24 12.51 8.31 -92.71 -0.77 11.74 16 23 H 0.03 1.44 8.08 -2.39 -0.02 1.42 16 24 H -0.02 -1.04 7.91 -2.39 -0.02 -1.05 16 25 H 0.30 11.85 9.08 -89.70 -0.81 11.03 16 26 H 0.34 15.21 6.44 -89.69 -0.58 14.63 16 27 H -0.01 -0.27 8.08 -2.38 -0.02 -0.29 16 28 H 0.11 5.62 3.97 -2.39 -0.01 5.61 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 2.13 6.38 -2.39 -0.02 2.12 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.06 2.27 5.93 -2.39 -0.01 2.25 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.09 3.80 4.94 -2.39 -0.01 3.79 16 Total: -1.00 -51.15 263.93 2.58 -48.57 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: -0.34 Total: 28.30 kcal Atomic # 6 Polarization: -45.02 SS G_CDS: 1.90 Total: -43.12 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -1.01 Total: -78.68 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.94 kcal Total: -51.15 2.58 -48.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984170.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.448 kcal (2) G-P(sol) polarization free energy of solvation -51.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds