Wall clock time and date at job start Mon Mar 30 2020 03:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99539 * 2 1 4 4 H 1.48500 * 109.47015 * 269.99747 * 3 2 1 5 5 H 1.48497 * 109.47307 * 29.99569 * 3 2 1 6 6 H 1.48498 * 109.47010 * 149.99914 * 3 2 1 7 7 C 1.37876 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99460 * 172.44531 * 7 2 1 9 9 C 1.50700 * 120.00153 * 352.44675 * 7 2 1 10 10 C 1.52995 * 109.94981 * 324.18801 * 9 7 2 11 11 N 1.46903 * 109.46842 * 307.02202 * 10 9 7 12 12 C 1.53732 * 109.89998 * 203.08556 * 9 7 2 13 13 C 1.52562 * 111.50067 * 298.38297 * 12 9 7 14 14 C 1.53768 * 111.45001 * 305.21043 * 13 12 9 15 15 C 1.51085 * 108.01930 * 57.14452 * 14 13 12 16 16 H 1.09004 * 108.93732 * 55.61216 * 15 14 13 17 17 C 1.52501 * 117.37229 * 181.08542 * 15 14 13 18 18 C 1.54913 * 105.40380 * 147.21936 * 17 15 14 19 19 C 1.55315 * 106.38322 * 356.49773 * 18 17 15 20 20 C 1.51789 * 109.89622 * 85.27973 * 9 7 2 21 21 H 1.09002 * 110.36868 * 176.05324 * 20 9 7 22 22 H 0.96996 * 120.00473 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47659 * 67.02396 * 10 9 7 24 24 H 1.09004 * 109.47231 * 187.03029 * 10 9 7 25 25 H 1.00909 * 110.99978 * 175.41408 * 11 10 9 26 26 H 1.00893 * 111.00461 * 299.37589 * 11 10 9 27 27 H 1.09001 * 109.07104 * 58.90143 * 12 9 7 28 28 H 1.08997 * 109.07321 * 177.86082 * 12 9 7 29 29 H 1.09000 * 109.08878 * 65.71736 * 13 12 9 30 30 H 1.09004 * 109.08697 * 184.70546 * 13 12 9 31 31 H 1.09002 * 109.89805 * 176.93144 * 14 13 12 32 32 H 1.08996 * 109.89863 * 297.97907 * 14 13 12 33 33 H 1.08997 * 110.27440 * 28.21039 * 17 15 14 34 34 H 1.08997 * 110.27150 * 266.22393 * 17 15 14 35 35 H 1.09000 * 110.07623 * 115.72846 * 18 17 15 36 36 H 1.09005 * 110.07694 * 237.21233 * 18 17 15 37 37 H 1.09000 * 110.72244 * 94.40340 * 19 18 17 38 38 H 1.08994 * 110.72484 * 217.68901 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0776 -1.1980 -0.1224 9 6 1.2610 -2.4934 0.1727 10 6 0.0935 -2.3022 1.1428 11 7 0.5868 -1.7038 2.3905 12 6 2.2139 -3.5749 0.7072 13 6 3.3575 -3.8432 -0.2663 14 6 2.8319 -4.2000 -1.6666 15 6 1.9554 -3.0642 -2.1403 16 1 2.5272 -2.1370 -2.1033 17 6 1.2970 -3.2101 -3.5081 18 6 -0.0616 -2.4749 -3.3913 19 6 -0.1786 -2.0023 -1.9164 20 6 0.7429 -2.9740 -1.1707 21 1 0.2641 -3.9476 -1.0664 22 1 -0.4850 0.8400 -0.0004 23 1 -0.6490 -1.6435 0.6926 24 1 -0.3616 -3.2689 1.3587 25 1 -0.1754 -1.4984 3.0191 26 1 1.2694 -2.3007 2.8328 27 1 2.6275 -3.2456 1.6604 28 1 1.6545 -4.4973 0.8626 29 1 3.9823 -2.9527 -0.3364 30 1 3.9592 -4.6705 0.1100 31 1 3.6675 -4.3331 -2.3537 32 1 2.2415 -5.1150 -1.6192 33 1 1.1379 -4.2631 -3.7403 34 1 1.9141 -2.7435 -4.2759 35 1 -0.0810 -1.6159 -4.0620 36 1 -0.8776 -3.1561 -3.6326 37 1 0.1757 -0.9770 -1.8107 38 1 -1.2051 -2.0954 -1.5619 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260984173.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:09 Heat of formation + Delta-G solvation = -12.764556 kcal Electronic energy + Delta-G solvation = -17182.062777 eV Core-core repulsion = 14830.396109 eV Total energy + Delta-G solvation = -2351.666668 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.19429 -34.82428 -33.35485 -31.48203 -29.61420 -27.54285 -26.24844 -24.55669 -23.19916 -20.53032 -19.57179 -18.76884 -18.36148 -15.53772 -14.85278 -14.63541 -14.17002 -13.68246 -13.40402 -12.94302 -12.75661 -12.41234 -12.40314 -11.75663 -11.47400 -11.24443 -10.78471 -10.68142 -10.45466 -10.17819 -9.99847 -9.95509 -9.78921 -9.69753 -9.50279 -9.22622 -8.88796 -8.49305 -8.28975 -7.89837 -7.09717 -5.63389 -3.73046 3.43709 3.51373 3.55850 4.62993 5.45274 5.53201 5.62827 5.70983 5.86294 5.99648 6.11190 6.16196 6.32301 6.45783 6.51799 6.57349 6.60333 6.67533 6.70429 6.72967 6.78914 6.91709 6.93902 7.03800 7.13061 7.17491 7.36603 7.50982 7.56683 7.58885 7.82101 7.90290 8.19853 8.37826 8.56591 8.75252 8.90736 9.22045 9.88534 11.28105 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023029 B = 0.014561 C = 0.012613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.588853 B = 1922.431912 C = 2219.388179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.086 3.914 3 Si 0.882 3.118 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.471 4.471 8 H 0.048 0.952 9 C 0.082 3.918 10 C 0.072 3.928 11 N -0.814 5.814 12 C -0.104 4.104 13 C -0.105 4.105 14 C -0.099 4.099 15 C -0.094 4.094 16 H 0.087 0.913 17 C -0.112 4.112 18 C -0.130 4.130 19 C -0.100 4.100 20 C -0.060 4.060 21 H 0.024 0.976 22 H 0.251 0.749 23 H 0.129 0.871 24 H -0.042 1.042 25 H 0.310 0.690 26 H 0.310 0.690 27 H 0.047 0.953 28 H 0.024 0.976 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.041 0.959 37 H 0.114 0.886 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.981 -5.495 -2.065 5.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.114 4.114 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.509 4.509 8 H 0.066 0.934 9 C 0.082 3.918 10 C -0.058 4.058 11 N -0.340 5.340 12 C -0.142 4.142 13 C -0.143 4.143 14 C -0.137 4.137 15 C -0.112 4.112 16 H 0.105 0.895 17 C -0.149 4.149 18 C -0.168 4.168 19 C -0.137 4.137 20 C -0.080 4.080 21 H 0.043 0.957 22 H 0.062 0.938 23 H 0.146 0.854 24 H -0.025 1.025 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.132 0.868 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.107 -4.763 -2.530 5.506 hybrid contribution 0.084 -0.107 0.519 0.536 sum 1.190 -4.870 -2.011 5.402 Atomic orbital electron populations 1.69693 1.05627 1.24760 1.51476 1.24597 0.94418 0.97904 0.94443 0.86793 0.80092 0.84791 0.77167 1.21696 1.21727 1.20511 1.20641 0.92601 0.89787 1.47855 0.93369 1.18032 0.91369 0.92518 0.89907 1.22258 1.00098 0.93306 0.90118 1.58526 1.16578 1.51901 1.06976 1.21635 0.96839 0.97831 0.97869 1.21401 0.98260 0.99712 0.94905 1.21190 0.98181 0.97969 0.96334 1.21516 0.97297 0.99129 0.93307 0.89496 1.21873 0.96745 0.98665 0.97644 1.22643 0.95770 0.98314 1.00090 1.22348 0.98010 1.03427 0.89919 1.21821 0.93886 0.95578 0.96684 0.95710 0.93822 0.85352 1.02455 0.88038 0.87924 0.93431 0.95762 0.91885 0.94715 0.93842 0.93683 0.93614 0.93423 0.93511 0.94057 0.86774 0.94179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.49 7.61 55.43 0.42 -22.07 16 2 C 0.09 2.20 3.91 -17.82 -0.07 2.13 16 3 Si 0.88 21.18 29.54 -169.99 -5.02 16.15 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.47 -11.80 5.32 -34.44 -0.18 -11.98 16 8 H 0.05 1.26 6.43 -52.48 -0.34 0.92 16 9 C 0.08 1.87 0.32 -155.90 -0.05 1.82 16 10 C 0.07 1.67 4.90 -3.83 -0.02 1.65 16 11 N -0.81 -17.71 8.59 -10.37 -0.09 -17.80 16 12 C -0.10 -2.15 4.43 -26.58 -0.12 -2.26 16 13 C -0.11 -1.99 5.58 -26.56 -0.15 -2.14 16 14 C -0.10 -1.80 5.64 -27.30 -0.15 -1.95 16 15 C -0.09 -1.88 2.12 -90.50 -0.19 -2.07 16 16 H 0.09 1.95 6.59 -51.93 -0.34 1.61 16 17 C -0.11 -2.02 6.51 -25.98 -0.17 -2.19 16 18 C -0.13 -2.46 6.87 -24.49 -0.17 -2.63 16 19 C -0.10 -2.19 4.79 -25.36 -0.12 -2.32 16 20 C -0.06 -1.31 1.57 -89.76 -0.14 -1.45 16 21 H 0.02 0.54 8.09 -51.93 -0.42 0.12 16 22 H 0.25 6.44 8.31 -40.82 -0.34 6.10 16 23 H 0.13 3.28 4.87 -51.93 -0.25 3.03 16 24 H -0.04 -0.97 8.14 -51.93 -0.42 -1.39 16 25 H 0.31 6.16 9.08 -39.29 -0.36 5.80 16 26 H 0.31 6.28 7.63 -39.30 -0.30 5.98 16 27 H 0.05 0.99 7.00 -51.93 -0.36 0.62 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 1.26 6.80 -51.93 -0.35 0.91 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.79 8.10 -51.93 -0.42 0.37 16 33 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.11 2.84 4.80 -51.93 -0.25 2.59 16 38 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 LS Contribution 269.92 15.07 4.07 4.07 Total: -1.00 -25.20 269.92 -8.49 -33.69 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -6.33 Total: 9.34 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -1.53 Total: -23.38 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.33 Total: -39.87 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -25.20 -8.49 -33.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984173.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.923 kcal (2) G-P(sol) polarization free energy of solvation -25.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds