Wall clock time and date at job start Mon Mar 30 2020 03:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99539 * 2 1 4 4 H 1.48500 * 109.47015 * 269.99747 * 3 2 1 5 5 H 1.48497 * 109.47307 * 29.99569 * 3 2 1 6 6 H 1.48498 * 109.47010 * 149.99914 * 3 2 1 7 7 C 1.37876 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99460 * 172.44531 * 7 2 1 9 9 C 1.50700 * 120.00153 * 352.44675 * 7 2 1 10 10 C 1.52995 * 109.94981 * 324.18801 * 9 7 2 11 11 N 1.46903 * 109.46842 * 307.02202 * 10 9 7 12 12 C 1.53732 * 109.89998 * 203.08556 * 9 7 2 13 13 C 1.52562 * 111.50067 * 298.38297 * 12 9 7 14 14 C 1.53768 * 111.45001 * 305.21043 * 13 12 9 15 15 C 1.51085 * 108.01930 * 57.14452 * 14 13 12 16 16 H 1.09004 * 108.93732 * 55.61216 * 15 14 13 17 17 C 1.52501 * 117.37229 * 181.08542 * 15 14 13 18 18 C 1.54913 * 105.40380 * 147.21936 * 17 15 14 19 19 C 1.55315 * 106.38322 * 356.49773 * 18 17 15 20 20 C 1.51789 * 109.89622 * 85.27973 * 9 7 2 21 21 H 1.09002 * 110.36868 * 176.05324 * 20 9 7 22 22 H 0.96996 * 120.00473 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47659 * 67.02396 * 10 9 7 24 24 H 1.09004 * 109.47231 * 187.03029 * 10 9 7 25 25 H 1.00909 * 110.99978 * 175.41408 * 11 10 9 26 26 H 1.00893 * 111.00461 * 299.37589 * 11 10 9 27 27 H 1.09001 * 109.07104 * 58.90143 * 12 9 7 28 28 H 1.08997 * 109.07321 * 177.86082 * 12 9 7 29 29 H 1.09000 * 109.08878 * 65.71736 * 13 12 9 30 30 H 1.09004 * 109.08697 * 184.70546 * 13 12 9 31 31 H 1.09002 * 109.89805 * 176.93144 * 14 13 12 32 32 H 1.08996 * 109.89863 * 297.97907 * 14 13 12 33 33 H 1.08997 * 110.27440 * 28.21039 * 17 15 14 34 34 H 1.08997 * 110.27150 * 266.22393 * 17 15 14 35 35 H 1.09000 * 110.07623 * 115.72846 * 18 17 15 36 36 H 1.09005 * 110.07694 * 237.21233 * 18 17 15 37 37 H 1.09000 * 110.72244 * 94.40340 * 19 18 17 38 38 H 1.08994 * 110.72484 * 217.68901 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0776 -1.1980 -0.1224 9 6 1.2610 -2.4934 0.1727 10 6 0.0935 -2.3022 1.1428 11 7 0.5868 -1.7038 2.3905 12 6 2.2139 -3.5749 0.7072 13 6 3.3575 -3.8432 -0.2663 14 6 2.8319 -4.2000 -1.6666 15 6 1.9554 -3.0642 -2.1403 16 1 2.5272 -2.1370 -2.1033 17 6 1.2970 -3.2101 -3.5081 18 6 -0.0616 -2.4749 -3.3913 19 6 -0.1786 -2.0023 -1.9164 20 6 0.7429 -2.9740 -1.1707 21 1 0.2641 -3.9476 -1.0664 22 1 -0.4850 0.8400 -0.0004 23 1 -0.6490 -1.6435 0.6926 24 1 -0.3616 -3.2689 1.3587 25 1 -0.1754 -1.4984 3.0191 26 1 1.2694 -2.3007 2.8328 27 1 2.6275 -3.2456 1.6604 28 1 1.6545 -4.4973 0.8626 29 1 3.9823 -2.9527 -0.3364 30 1 3.9592 -4.6705 0.1100 31 1 3.6675 -4.3331 -2.3537 32 1 2.2415 -5.1150 -1.6192 33 1 1.1379 -4.2631 -3.7403 34 1 1.9141 -2.7435 -4.2759 35 1 -0.0810 -1.6159 -4.0620 36 1 -0.8776 -3.1561 -3.6326 37 1 0.1757 -0.9770 -1.8107 38 1 -1.2051 -2.0954 -1.5619 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260984173.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:09 Heat of formation + Delta-G solvation = -26.305318 kcal Electronic energy + Delta-G solvation = -17182.649948 eV Core-core repulsion = 14830.396109 eV Total energy + Delta-G solvation = -2352.253839 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.84873 -36.51932 -34.98774 -33.37183 -31.31395 -29.12929 -27.90662 -26.43776 -24.90870 -22.07926 -21.25051 -20.45419 -20.05401 -17.38964 -16.62676 -16.47992 -15.75756 -15.46303 -14.99207 -14.62047 -14.41578 -14.12653 -13.96443 -13.43993 -13.17041 -13.05634 -12.65001 -12.36391 -12.26640 -11.90258 -11.71440 -11.55470 -11.49210 -11.26883 -11.22061 -10.84492 -10.57318 -10.24841 -10.04965 -9.83094 -8.86448 -7.59484 -5.71567 1.48009 1.53734 1.58796 2.65375 3.56641 3.93952 4.08457 4.17713 4.34269 4.40448 4.57467 4.64238 4.74273 4.87898 4.96108 5.01754 5.04147 5.07348 5.11202 5.19202 5.23007 5.26741 5.34883 5.44587 5.51254 5.60212 5.66390 5.81252 5.87025 5.93893 5.98316 6.09571 6.39338 6.47880 6.70769 6.96076 7.17576 7.29779 7.89240 9.27995 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023029 B = 0.014561 C = 0.012613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.588853 B = 1922.431912 C = 2219.388179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.056 3.944 3 Si 0.917 3.083 4 H -0.291 1.291 5 H -0.297 1.297 6 H -0.285 1.285 7 C -0.468 4.468 8 H 0.034 0.966 9 C 0.076 3.924 10 C 0.078 3.922 11 N -0.823 5.823 12 C -0.102 4.102 13 C -0.104 4.104 14 C -0.095 4.095 15 C -0.089 4.089 16 H 0.057 0.943 17 C -0.107 4.107 18 C -0.127 4.127 19 C -0.100 4.100 20 C -0.063 4.063 21 H 0.025 0.975 22 H 0.244 0.756 23 H 0.105 0.895 24 H -0.040 1.040 25 H 0.320 0.680 26 H 0.319 0.681 27 H 0.040 0.960 28 H 0.032 0.968 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.598 -6.990 -2.813 7.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.142 4.142 3 Si 0.748 3.252 4 H -0.218 1.218 5 H -0.224 1.224 6 H -0.211 1.211 7 C -0.506 4.506 8 H 0.052 0.948 9 C 0.075 3.925 10 C -0.053 4.053 11 N -0.350 5.350 12 C -0.139 4.139 13 C -0.141 4.141 14 C -0.133 4.133 15 C -0.107 4.107 16 H 0.075 0.925 17 C -0.144 4.144 18 C -0.164 4.164 19 C -0.137 4.137 20 C -0.082 4.082 21 H 0.044 0.956 22 H 0.055 0.945 23 H 0.122 0.878 24 H -0.023 1.023 25 H 0.130 0.870 26 H 0.131 0.869 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.727 -6.259 -3.275 7.272 hybrid contribution -0.123 0.382 0.794 0.889 sum 1.605 -5.878 -2.481 6.579 Atomic orbital electron populations 1.69844 1.05845 1.24294 1.52077 1.24943 0.94884 0.99251 0.95112 0.86247 0.79005 0.83249 0.76708 1.21805 1.22386 1.21122 1.20703 0.91901 0.90906 1.47088 0.94815 1.18078 0.91507 0.92285 0.90641 1.22080 0.99820 0.92732 0.90657 1.58456 1.17324 1.52161 1.07057 1.21569 0.97088 0.97266 0.98018 1.21377 0.97538 0.99953 0.95257 1.21167 0.98669 0.97400 0.96018 1.21443 0.96516 0.98699 0.94081 0.92491 1.21851 0.95907 0.99966 0.96704 1.22596 0.97179 0.98970 0.97681 1.22189 0.97006 1.02022 0.92496 1.21780 0.94706 0.95182 0.96560 0.95628 0.94539 0.87757 1.02254 0.86955 0.86885 0.94081 0.94973 0.93625 0.92134 0.91676 0.92500 0.91470 0.92186 0.93182 0.92358 0.89757 0.95710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.91 7.61 21.45 0.16 -45.74 16 2 C 0.06 2.91 3.91 84.65 0.33 3.24 16 3 Si 0.92 43.80 29.54 68.60 2.03 45.82 16 4 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 7 C -0.47 -23.49 5.32 25.60 0.14 -23.35 16 8 H 0.03 1.77 6.43 -2.91 -0.02 1.75 16 9 C 0.08 3.39 0.32 -53.08 -0.02 3.37 16 10 C 0.08 3.58 4.90 86.30 0.42 4.00 16 11 N -0.82 -35.47 8.59 -186.72 -1.60 -37.08 16 12 C -0.10 -4.03 4.43 30.70 0.14 -3.90 16 13 C -0.10 -3.68 5.58 30.71 0.17 -3.50 16 14 C -0.10 -3.15 5.64 30.23 0.17 -2.97 16 15 C -0.09 -3.38 2.12 -10.72 -0.02 -3.40 16 16 H 0.06 2.51 6.59 -2.38 -0.02 2.50 16 17 C -0.11 -3.54 6.51 31.08 0.20 -3.33 16 18 C -0.13 -4.53 6.87 32.04 0.22 -4.31 16 19 C -0.10 -4.36 4.79 31.48 0.15 -4.20 16 20 C -0.06 -2.66 1.57 -10.24 -0.02 -2.68 16 21 H 0.03 1.07 8.09 -2.39 -0.02 1.05 16 22 H 0.24 12.77 8.31 -92.71 -0.77 12.00 16 23 H 0.10 5.40 4.87 -2.39 -0.01 5.39 16 24 H -0.04 -1.81 8.14 -2.38 -0.02 -1.83 16 25 H 0.32 12.57 9.08 -89.69 -0.81 11.76 16 26 H 0.32 12.70 7.63 -89.70 -0.68 12.01 16 27 H 0.04 1.65 7.00 -2.39 -0.02 1.63 16 28 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.04 1.77 6.80 -2.39 -0.02 1.75 16 30 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 33 H 0.07 1.96 8.09 -2.39 -0.02 1.94 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.08 4.24 4.80 -2.39 -0.01 4.23 16 38 H 0.02 1.11 8.09 -2.39 -0.02 1.09 16 Total: -1.00 -52.69 269.92 2.02 -50.68 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: -0.45 Total: 27.37 kcal Atomic # 6 Polarization: -42.94 SS G_CDS: 1.89 Total: -41.05 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -1.44 Total: -82.82 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -52.69 2.02 -50.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984173.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.371 kcal (2) G-P(sol) polarization free energy of solvation -52.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds