Wall clock time and date at job start Mon Mar 30 2020 02:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 119.99986 * 2 1 4 4 H 1.48502 * 109.47434 * 270.00036 * 3 2 1 5 5 H 1.48507 * 109.47360 * 29.99909 * 3 2 1 6 6 H 1.48504 * 109.47336 * 150.00013 * 3 2 1 7 7 C 1.37877 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00516 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99391 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46689 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.78803 * 294.18408 * 10 9 7 12 12 C 1.53516 * 113.47762 * 163.38011 * 10 9 7 13 13 C 1.53506 * 83.57461 * 219.20758 * 12 10 9 14 14 N 1.47475 * 113.47995 * 64.99837 * 10 9 7 15 15 C 1.46901 * 110.99904 * 253.46847 * 14 10 9 16 16 C 1.53000 * 109.47093 * 169.99917 * 15 14 10 17 17 C 1.54961 * 110.76665 * 71.63215 * 16 15 14 18 18 C 1.54270 * 104.16191 * 156.22182 * 17 16 15 19 19 C 1.53869 * 106.63967 * 336.44607 * 18 17 16 20 20 C 1.54268 * 106.60115 * 359.97438 * 19 18 17 21 21 H 0.96997 * 120.00469 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47413 * 59.99594 * 9 7 2 23 23 H 1.08995 * 109.47113 * 299.99171 * 9 7 2 24 24 H 1.09004 * 114.16329 * 332.85388 * 12 10 9 25 25 H 1.08998 * 114.17615 * 105.36732 * 12 10 9 26 26 H 1.08998 * 113.47419 * 271.25143 * 13 12 10 27 27 H 1.09000 * 113.47726 * 140.78928 * 13 12 10 28 28 H 1.08997 * 109.47099 * 50.00021 * 15 14 10 29 29 H 1.09001 * 109.47483 * 289.99896 * 15 14 10 30 30 H 1.09003 * 110.67583 * 308.23096 * 16 15 14 31 31 H 1.08997 * 110.47708 * 37.56779 * 17 16 15 32 32 H 1.09002 * 110.53308 * 274.90171 * 17 16 15 33 33 H 1.09002 * 110.03399 * 217.13605 * 18 17 16 34 34 H 1.08995 * 110.02943 * 95.75505 * 18 17 16 35 35 H 1.08999 * 110.03405 * 119.26051 * 19 18 17 36 36 H 1.09001 * 110.03705 * 240.64196 * 19 18 17 37 37 H 1.08997 * 110.48788 * 142.28685 * 20 19 18 38 38 H 1.09001 * 110.48482 * 264.93365 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0014 11 1 3.7737 -3.1728 0.9147 12 6 5.4976 -2.7630 -0.4037 13 6 5.0086 -4.0124 -1.1495 14 7 3.6788 -3.3797 -1.2282 15 6 2.6140 -4.3585 -0.9707 16 6 2.1136 -4.9290 -2.2992 17 6 3.1713 -5.8730 -2.9250 18 6 2.3517 -6.8001 -3.8463 19 6 0.9116 -6.7988 -3.3044 20 6 0.9054 -5.8712 -2.0717 21 1 -0.4851 0.8400 0.0004 22 1 3.8745 -0.6808 0.8904 23 1 3.8752 -0.6797 -0.8895 24 1 5.8524 -1.9645 -1.0554 25 1 6.1707 -2.9708 0.4280 26 1 5.0243 -4.9159 -0.5399 27 1 5.4818 -4.1509 -2.1216 28 1 1.7895 -3.8701 -0.4514 29 1 3.0050 -5.1666 -0.3525 30 1 1.8528 -4.1263 -2.9890 31 1 3.6722 -6.4520 -2.1492 32 1 3.8969 -5.3030 -3.5053 33 1 2.7602 -7.8103 -3.8184 34 1 2.3667 -6.4197 -4.8676 35 1 0.2278 -6.4169 -4.0624 36 1 0.6208 -7.8084 -3.0143 37 1 -0.0215 -5.2994 -2.0292 38 1 1.0399 -6.4502 -1.1580 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260984624.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:55 Heat of formation + Delta-G solvation = -7.665056 kcal Electronic energy + Delta-G solvation = -15833.698880 eV Core-core repulsion = 13482.253343 eV Total energy + Delta-G solvation = -2351.445537 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.13029 -38.73297 -34.99746 -32.77917 -31.54839 -29.54330 -28.46876 -26.34783 -24.23138 -22.91661 -21.09718 -20.93153 -20.16874 -18.88901 -17.17398 -16.69789 -16.36333 -15.84829 -15.77878 -15.04677 -14.49319 -14.29027 -14.13959 -13.69611 -13.36964 -13.15253 -12.98324 -12.56164 -12.31434 -12.16333 -12.02182 -11.91532 -11.84307 -11.70415 -11.43576 -11.25040 -11.16698 -10.88983 -10.83429 -10.69936 -9.55179 -8.22254 -6.22906 1.36287 1.37309 1.48957 2.39680 3.10376 3.24527 3.70324 3.74401 3.78643 3.92828 4.06671 4.27309 4.40997 4.54187 4.58052 4.58683 4.67860 4.75164 4.81299 4.83386 4.86670 4.91219 4.98885 5.02346 5.07666 5.15160 5.22573 5.26557 5.31597 5.37929 5.44313 5.52653 5.57456 5.70332 5.82252 6.37498 6.44346 6.84217 7.39088 8.94296 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028650 B = 0.007878 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.081558 B = 3553.542097 C = 4278.257189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.001 4.001 3 Si 0.948 3.052 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.245 1.245 7 C -0.507 4.507 8 H 0.038 0.962 9 C 0.002 3.998 10 C 0.039 3.961 11 H 0.059 0.941 12 C -0.136 4.136 13 C 0.005 3.995 14 N -0.477 5.477 15 C 0.038 3.962 16 C -0.081 4.081 17 C -0.106 4.106 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.123 4.123 21 H 0.262 0.738 22 H 0.022 0.978 23 H 0.016 0.984 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.039 0.961 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.046 0.954 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.922 -12.721 -4.490 16.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.197 4.197 3 Si 0.772 3.228 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.169 1.169 7 C -0.546 4.546 8 H 0.056 0.944 9 C -0.036 4.036 10 C -0.070 4.070 11 H 0.077 0.923 12 C -0.174 4.174 13 C -0.123 4.123 14 N -0.199 5.199 15 C -0.091 4.091 16 C -0.100 4.100 17 C -0.143 4.143 18 C -0.158 4.158 19 C -0.157 4.157 20 C -0.161 4.161 21 H 0.071 0.929 22 H 0.040 0.960 23 H 0.034 0.966 24 H 0.106 0.894 25 H 0.111 0.889 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.537 -12.290 -5.101 16.371 hybrid contribution -0.491 0.629 0.851 1.167 sum 9.046 -11.661 -4.249 15.358 Atomic orbital electron populations 1.70078 1.08200 1.27648 1.53924 1.25972 0.95560 1.03263 0.94861 0.85693 0.79608 0.78748 0.78759 1.19909 1.21271 1.16879 1.21421 0.91868 0.92993 1.48281 0.94415 1.19462 0.94325 0.93746 0.96019 1.23200 0.95327 0.96090 0.92379 0.92254 1.23237 0.94868 0.98504 1.00744 1.23826 0.91090 0.96289 1.01123 1.68841 1.02355 1.16727 1.32015 1.22568 0.95653 0.93991 0.96861 1.21974 0.95857 0.96566 0.95623 1.22339 0.96959 0.96414 0.98635 1.22129 0.94678 1.00053 0.98933 1.22097 0.97412 0.99582 0.96561 1.22396 0.97245 0.97258 0.99175 0.92944 0.95968 0.96578 0.89446 0.88941 0.90709 0.89161 0.94208 0.93368 0.93085 0.91277 0.91936 0.90299 0.91867 0.92174 0.90465 0.93531 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.99 13.96 21.45 0.30 -61.69 16 2 C 0.00 -0.08 5.47 84.65 0.46 0.39 16 3 Si 0.95 46.12 27.47 68.60 1.88 48.01 16 4 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 7 C -0.51 -29.98 9.49 25.60 0.24 -29.73 16 8 H 0.04 2.44 5.83 -2.91 -0.02 2.43 16 9 C 0.00 0.11 4.10 29.85 0.12 0.23 16 10 C 0.04 1.56 3.01 42.19 0.13 1.68 16 11 H 0.06 2.36 7.91 -2.39 -0.02 2.34 16 12 C -0.14 -4.00 8.01 30.94 0.25 -3.75 16 13 C 0.01 0.15 6.77 83.57 0.57 0.71 16 14 N -0.48 -18.14 5.94 -902.23 -5.36 -23.50 16 15 C 0.04 1.41 4.32 86.30 0.37 1.78 16 16 C -0.08 -2.66 3.12 -9.47 -0.03 -2.68 16 17 C -0.11 -2.65 5.32 31.70 0.17 -2.48 16 18 C -0.12 -2.54 6.80 31.32 0.21 -2.32 16 19 C -0.12 -2.71 6.80 31.32 0.21 -2.49 16 20 C -0.12 -3.55 6.28 31.67 0.20 -3.35 16 21 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 22 H 0.02 1.04 7.20 -2.39 -0.02 1.03 16 23 H 0.02 0.78 7.50 -2.39 -0.02 0.76 16 24 H 0.09 2.59 8.07 -2.38 -0.02 2.57 16 25 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.07 1.84 7.42 -2.39 -0.02 1.82 16 27 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.04 1.84 5.97 -2.39 -0.01 1.82 16 29 H 0.05 1.57 7.15 -2.39 -0.02 1.55 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 1.57 7.94 -2.39 -0.02 1.55 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.86 8.05 -2.39 -0.02 1.84 16 Total: -1.00 -67.79 292.21 0.67 -67.12 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.94 Total: 12.09 kcal Atomic # 6 Polarization: -44.93 SS G_CDS: 2.90 Total: -42.03 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -5.06 Total: -85.19 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.88 Total: 48.01 kcal Total: -67.79 0.67 -67.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984624.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.457 kcal (2) G-P(sol) polarization free energy of solvation -67.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds