Wall clock time and date at job start Mon Mar 30 2020 02:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00120 * 2 1 4 4 H 1.48506 * 109.47084 * 269.99732 * 3 2 1 5 5 H 1.48506 * 109.46950 * 29.98870 * 3 2 1 6 6 H 1.48494 * 109.47407 * 149.99225 * 3 2 1 7 7 C 1.37875 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00231 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00092 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47374 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.74388 * 65.77068 * 10 9 7 12 12 C 1.53514 * 113.47705 * 196.61886 * 10 9 7 13 13 C 1.53515 * 83.57214 * 140.78891 * 12 10 9 14 14 N 1.47475 * 87.93229 * 333.97566 * 13 12 10 15 15 C 1.46901 * 110.99837 * 138.70411 * 14 13 12 16 16 C 1.53000 * 109.47093 * 74.02702 * 15 14 13 17 17 C 1.54961 * 110.76665 * 71.63215 * 16 15 14 18 18 C 1.54270 * 104.16191 * 156.22182 * 17 16 15 19 19 C 1.53869 * 106.63967 * 336.44607 * 18 17 16 20 20 C 1.54268 * 106.60115 * 359.97438 * 19 18 17 21 21 H 0.96999 * 120.00222 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47112 * 60.00137 * 9 7 2 23 23 H 1.08997 * 109.47399 * 300.00102 * 9 7 2 24 24 H 1.09002 * 114.16879 * 254.43914 * 12 10 9 25 25 H 1.09000 * 114.16762 * 27.14626 * 12 10 9 26 26 H 1.09005 * 113.47311 * 219.20887 * 13 12 10 27 27 H 1.08997 * 113.47294 * 88.74552 * 13 12 10 28 28 H 1.08997 * 109.47099 * 314.02806 * 15 14 13 29 29 H 1.09001 * 109.47483 * 194.02681 * 15 14 13 30 30 H 1.09003 * 110.67583 * 308.23096 * 16 15 14 31 31 H 1.08997 * 110.47708 * 37.56779 * 17 16 15 32 32 H 1.09002 * 110.53308 * 274.90171 * 17 16 15 33 33 H 1.09002 * 110.03399 * 217.13605 * 18 17 16 34 34 H 1.08995 * 110.02943 * 95.75505 * 18 17 16 35 35 H 1.08999 * 110.03405 * 119.26051 * 19 18 17 36 36 H 1.09001 * 110.03705 * 240.64196 * 19 18 17 37 37 H 1.08997 * 110.48788 * 142.28685 * 20 19 18 38 38 H 1.09001 * 110.48482 * 264.93365 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6998 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6366 0.0010 11 1 3.7735 -3.1712 -0.9159 12 6 5.4974 -2.7635 0.4042 13 6 5.0078 -4.0139 1.1481 14 7 3.6780 -3.3813 1.2267 15 6 2.6134 -4.3597 0.9672 16 6 2.4569 -5.2772 2.1815 17 6 1.8097 -4.5157 3.3657 18 6 1.1719 -5.6266 4.2254 19 6 0.9302 -6.8239 3.2896 20 6 1.4289 -6.3993 1.8929 21 1 -0.4850 0.8400 -0.0004 22 1 3.8745 -0.6800 0.8912 23 1 3.8752 -0.6804 -0.8888 24 1 6.1707 -2.9734 -0.4269 25 1 5.8517 -1.9659 1.0572 26 1 5.4804 -4.1536 2.1204 27 1 5.0239 -4.9165 0.5374 28 1 2.8732 -4.9558 0.0924 29 1 1.6752 -3.8359 0.7843 30 1 3.4190 -5.7000 2.4709 31 1 1.0459 -3.8271 3.0044 32 1 2.5684 -3.9800 3.9363 33 1 0.2255 -5.2804 4.6408 34 1 1.8501 -5.9121 5.0295 35 1 1.4918 -7.6903 3.6391 36 1 -0.1334 -7.0593 3.2515 37 1 1.9102 -7.2372 1.3886 38 1 0.6033 -6.0153 1.2936 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260984626.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:57 Heat of formation + Delta-G solvation = 10.869353 kcal Electronic energy + Delta-G solvation = -15851.033606 eV Core-core repulsion = 13500.391782 eV Total energy + Delta-G solvation = -2350.641825 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.70005 -37.54914 -32.82452 -31.39422 -29.60089 -28.38700 -27.19667 -24.53940 -22.84898 -21.23921 -20.04192 -19.43456 -18.80902 -16.63763 -15.99357 -15.10441 -14.76723 -14.58547 -14.01609 -13.40098 -13.30200 -12.95600 -12.46949 -12.02660 -11.86975 -11.38233 -11.29602 -11.04843 -11.03735 -10.80151 -10.75480 -10.41265 -10.32962 -10.15165 -10.03815 -10.02625 -9.69435 -9.19373 -8.96517 -8.44082 -8.07078 -5.94564 -3.89976 3.36377 3.44079 3.48911 4.53646 4.56603 4.90524 4.94561 5.01643 5.11038 5.36071 5.40731 5.53520 5.68056 5.77351 5.83992 5.85977 5.88891 5.95351 6.03148 6.07144 6.07782 6.17106 6.23100 6.27564 6.35557 6.38345 6.52772 6.62272 6.70430 6.75289 6.85977 7.06299 7.28966 7.42736 7.89374 7.91902 8.64137 9.10648 9.68457 11.18889 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025933 B = 0.008283 C = 0.006845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.438365 B = 3379.701110 C = 4089.604856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.877 3.123 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.503 4.503 8 H 0.073 0.927 9 C 0.000 4.000 10 C 0.052 3.948 11 H 0.064 0.936 12 C -0.152 4.152 13 C -0.009 4.009 14 N -0.447 5.447 15 C 0.030 3.970 16 C -0.082 4.082 17 C -0.108 4.108 18 C -0.127 4.127 19 C -0.122 4.122 20 C -0.121 4.121 21 H 0.260 0.740 22 H 0.024 0.976 23 H 0.013 0.987 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.027 0.973 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.716 -11.185 4.281 13.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.136 4.136 3 Si 0.705 3.295 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.541 4.541 8 H 0.091 0.909 9 C -0.038 4.038 10 C -0.057 4.057 11 H 0.082 0.918 12 C -0.190 4.190 13 C -0.139 4.139 14 N -0.169 5.169 15 C -0.098 4.098 16 C -0.101 4.101 17 C -0.145 4.145 18 C -0.165 4.165 19 C -0.159 4.159 20 C -0.159 4.159 21 H 0.070 0.930 22 H 0.042 0.958 23 H 0.031 0.969 24 H 0.081 0.919 25 H 0.106 0.894 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.303 -10.733 4.900 13.377 hybrid contribution 0.431 0.355 -0.760 0.943 sum 6.733 -10.378 4.139 13.045 Atomic orbital electron populations 1.69912 1.06215 1.26589 1.52015 1.24999 0.94688 0.98958 0.94969 0.86815 0.80480 0.83952 0.78231 1.20581 1.21598 1.19034 1.21050 0.89273 0.94254 1.49509 0.90922 1.19513 0.97504 0.90475 0.96297 1.23240 0.92077 0.98596 0.91783 0.91812 1.23288 0.97488 0.98226 0.99961 1.23728 0.93992 0.96195 0.99935 1.68935 1.00159 1.15279 1.32498 1.22710 0.98649 0.93526 0.94926 1.22043 0.97743 0.94696 0.95642 1.22291 0.99867 0.96747 0.95603 1.22178 1.00405 0.95879 0.98020 1.22093 1.00508 0.97836 0.95501 1.22405 0.98952 0.97826 0.96749 0.92988 0.95770 0.96862 0.91855 0.89435 0.90885 0.92619 0.95466 0.88986 0.91544 0.90871 0.91604 0.92233 0.92570 0.92520 0.92261 0.92368 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.22 13.96 55.43 0.77 -27.45 16 2 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 7 C -0.50 -14.29 9.49 -34.44 -0.33 -14.61 16 8 H 0.07 2.20 5.98 -52.49 -0.31 1.88 16 9 C 0.00 -0.01 4.10 -27.88 -0.11 -0.12 16 10 C 0.05 1.05 3.02 -71.44 -0.22 0.83 16 11 H 0.06 1.28 7.77 -51.93 -0.40 0.88 16 12 C -0.15 -2.47 8.01 -26.20 -0.21 -2.68 16 13 C -0.01 -0.14 6.94 -7.55 -0.05 -0.20 16 14 N -0.45 -8.57 5.97 -236.52 -1.41 -9.98 16 15 C 0.03 0.55 4.08 -3.82 -0.02 0.54 16 16 C -0.08 -1.26 2.95 -88.58 -0.26 -1.52 16 17 C -0.11 -1.72 6.21 -25.03 -0.16 -1.87 16 18 C -0.13 -1.67 6.80 -25.61 -0.17 -1.85 16 19 C -0.12 -1.48 6.80 -25.62 -0.17 -1.66 16 20 C -0.12 -1.63 6.28 -25.07 -0.16 -1.79 16 21 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 22 H 0.02 0.60 7.14 -51.93 -0.37 0.23 16 23 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.06 0.80 7.70 -51.93 -0.40 0.40 16 28 H 0.03 0.47 7.56 -51.93 -0.39 0.07 16 29 H 0.09 1.98 6.16 -51.93 -0.32 1.66 16 30 H 0.07 0.98 7.56 -51.93 -0.39 0.58 16 31 H 0.07 1.35 7.94 -51.93 -0.41 0.94 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.98 8.05 -51.93 -0.42 0.56 16 LS Contribution 293.25 15.07 4.42 4.42 Total: -1.00 -30.05 293.25 -9.63 -39.68 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.78 Total: -0.99 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -1.95 Total: -23.15 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.64 Total: -37.43 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.05 -9.63 -39.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984626.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.549 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds