Wall clock time and date at job start Mon Mar 30 2020 02:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00120 * 2 1 4 4 H 1.48506 * 109.47084 * 269.99732 * 3 2 1 5 5 H 1.48506 * 109.46950 * 29.98870 * 3 2 1 6 6 H 1.48494 * 109.47407 * 149.99225 * 3 2 1 7 7 C 1.37875 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00231 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00092 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47374 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.74388 * 65.77068 * 10 9 7 12 12 C 1.53514 * 113.47705 * 196.61886 * 10 9 7 13 13 C 1.53515 * 83.57214 * 140.78891 * 12 10 9 14 14 N 1.47475 * 87.93229 * 333.97566 * 13 12 10 15 15 C 1.46901 * 110.99837 * 138.70411 * 14 13 12 16 16 C 1.53000 * 109.47093 * 74.02702 * 15 14 13 17 17 C 1.54961 * 110.76665 * 71.63215 * 16 15 14 18 18 C 1.54270 * 104.16191 * 156.22182 * 17 16 15 19 19 C 1.53869 * 106.63967 * 336.44607 * 18 17 16 20 20 C 1.54268 * 106.60115 * 359.97438 * 19 18 17 21 21 H 0.96999 * 120.00222 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47112 * 60.00137 * 9 7 2 23 23 H 1.08997 * 109.47399 * 300.00102 * 9 7 2 24 24 H 1.09002 * 114.16879 * 254.43914 * 12 10 9 25 25 H 1.09000 * 114.16762 * 27.14626 * 12 10 9 26 26 H 1.09005 * 113.47311 * 219.20887 * 13 12 10 27 27 H 1.08997 * 113.47294 * 88.74552 * 13 12 10 28 28 H 1.08997 * 109.47099 * 314.02806 * 15 14 13 29 29 H 1.09001 * 109.47483 * 194.02681 * 15 14 13 30 30 H 1.09003 * 110.67583 * 308.23096 * 16 15 14 31 31 H 1.08997 * 110.47708 * 37.56779 * 17 16 15 32 32 H 1.09002 * 110.53308 * 274.90171 * 17 16 15 33 33 H 1.09002 * 110.03399 * 217.13605 * 18 17 16 34 34 H 1.08995 * 110.02943 * 95.75505 * 18 17 16 35 35 H 1.08999 * 110.03405 * 119.26051 * 19 18 17 36 36 H 1.09001 * 110.03705 * 240.64196 * 19 18 17 37 37 H 1.08997 * 110.48788 * 142.28685 * 20 19 18 38 38 H 1.09001 * 110.48482 * 264.93365 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6998 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6366 0.0010 11 1 3.7735 -3.1712 -0.9159 12 6 5.4974 -2.7635 0.4042 13 6 5.0078 -4.0139 1.1481 14 7 3.6780 -3.3813 1.2267 15 6 2.6134 -4.3597 0.9672 16 6 2.4569 -5.2772 2.1815 17 6 1.8097 -4.5157 3.3657 18 6 1.1719 -5.6266 4.2254 19 6 0.9302 -6.8239 3.2896 20 6 1.4289 -6.3993 1.8929 21 1 -0.4850 0.8400 -0.0004 22 1 3.8745 -0.6800 0.8912 23 1 3.8752 -0.6804 -0.8888 24 1 6.1707 -2.9734 -0.4269 25 1 5.8517 -1.9659 1.0572 26 1 5.4804 -4.1536 2.1204 27 1 5.0239 -4.9165 0.5374 28 1 2.8732 -4.9558 0.0924 29 1 1.6752 -3.8359 0.7843 30 1 3.4190 -5.7000 2.4709 31 1 1.0459 -3.8271 3.0044 32 1 2.5684 -3.9800 3.9363 33 1 0.2255 -5.2804 4.6408 34 1 1.8501 -5.9121 5.0295 35 1 1.4918 -7.6903 3.6391 36 1 -0.1334 -7.0593 3.2515 37 1 1.9102 -7.2372 1.3886 38 1 0.6033 -6.0153 1.2936 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260984626.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:57 Heat of formation + Delta-G solvation = -8.485620 kcal Electronic energy + Delta-G solvation = -15851.872901 eV Core-core repulsion = 13500.391782 eV Total energy + Delta-G solvation = -2351.481119 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.12559 -38.74490 -35.00143 -32.80817 -31.50531 -29.54411 -28.45643 -26.36568 -24.19931 -23.01328 -21.13459 -20.75650 -20.29119 -18.82016 -17.29752 -16.49654 -16.30660 -16.05505 -15.72254 -14.78331 -14.67190 -14.47445 -14.16117 -13.68287 -13.42603 -13.07853 -12.98376 -12.43743 -12.34627 -12.10006 -12.09943 -11.91062 -11.82164 -11.59735 -11.49878 -11.29070 -11.23484 -10.94656 -10.87013 -10.68003 -9.53250 -8.22293 -6.22798 1.34941 1.37826 1.49660 2.39758 3.10571 3.23629 3.67291 3.78443 3.79281 3.85205 4.05067 4.30565 4.45121 4.54460 4.58855 4.60586 4.62053 4.74071 4.80539 4.85138 4.88954 4.91142 4.95408 5.00645 5.07658 5.13967 5.20118 5.24668 5.32982 5.39663 5.44206 5.53233 5.58499 5.69832 5.81599 6.37478 6.42888 6.83825 7.39102 8.94322 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025933 B = 0.008283 C = 0.006845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.438365 B = 3379.701110 C = 4089.604856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.001 4.001 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.250 1.250 7 C -0.506 4.506 8 H 0.036 0.964 9 C 0.002 3.998 10 C 0.039 3.961 11 H 0.059 0.941 12 C -0.134 4.134 13 C 0.002 3.998 14 N -0.475 5.475 15 C 0.038 3.962 16 C -0.076 4.076 17 C -0.110 4.110 18 C -0.123 4.123 19 C -0.117 4.117 20 C -0.120 4.120 21 H 0.262 0.738 22 H 0.018 0.982 23 H 0.020 0.980 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.030 0.970 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.379 -12.275 4.844 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.197 4.197 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.173 1.173 7 C -0.544 4.544 8 H 0.054 0.946 9 C -0.035 4.035 10 C -0.070 4.070 11 H 0.077 0.923 12 C -0.172 4.172 13 C -0.127 4.127 14 N -0.197 5.197 15 C -0.090 4.090 16 C -0.094 4.094 17 C -0.147 4.147 18 C -0.160 4.160 19 C -0.154 4.154 20 C -0.158 4.158 21 H 0.070 0.930 22 H 0.036 0.964 23 H 0.039 0.961 24 H 0.111 0.889 25 H 0.105 0.895 26 H 0.109 0.891 27 H 0.093 0.907 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.986 -11.841 5.462 15.836 hybrid contribution -0.458 0.652 -0.948 1.238 sum 8.528 -11.188 4.515 14.774 Atomic orbital electron populations 1.70080 1.08197 1.27635 1.53933 1.25973 0.95560 1.03269 0.94874 0.85696 0.79453 0.78712 0.78974 1.19181 1.21494 1.17340 1.21397 0.91828 0.92925 1.48259 0.94588 1.19459 0.94329 0.93727 0.96024 1.23230 0.95367 0.96135 0.92315 0.92280 1.23219 0.94840 0.98387 1.00708 1.23751 0.91218 0.96471 1.01230 1.68884 1.02243 1.16575 1.32034 1.22554 0.96309 0.93383 0.96791 1.22018 0.99078 0.94507 0.93835 1.22229 0.98763 0.97206 0.96549 1.22158 1.00529 0.95118 0.98217 1.22092 1.01360 0.97982 0.94010 1.22408 0.97948 0.97696 0.97787 0.92956 0.96406 0.96133 0.88908 0.89458 0.89115 0.90719 0.94631 0.94098 0.89608 0.95063 0.92376 0.92368 0.90590 0.90067 0.91621 0.90204 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.03 13.96 21.45 0.30 -61.74 16 2 C 0.00 -0.09 5.47 84.65 0.46 0.37 16 3 Si 0.95 46.14 27.47 68.60 1.88 48.03 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.25 -11.41 6.54 99.48 0.65 -10.76 16 7 C -0.51 -29.92 9.49 25.60 0.24 -29.68 16 8 H 0.04 2.34 5.98 -2.91 -0.02 2.32 16 9 C 0.00 0.11 4.10 29.85 0.12 0.23 16 10 C 0.04 1.54 3.02 42.19 0.13 1.67 16 11 H 0.06 2.37 7.77 -2.39 -0.02 2.35 16 12 C -0.13 -3.95 8.01 30.94 0.25 -3.70 16 13 C 0.00 0.05 6.94 83.57 0.58 0.63 16 14 N -0.47 -18.08 5.97 -902.20 -5.39 -23.47 16 15 C 0.04 1.43 4.08 86.30 0.35 1.78 16 16 C -0.08 -2.27 2.95 -9.47 -0.03 -2.30 16 17 C -0.11 -3.59 6.21 31.70 0.20 -3.39 16 18 C -0.12 -3.08 6.80 31.32 0.21 -2.86 16 19 C -0.12 -2.59 6.80 31.32 0.21 -2.37 16 20 C -0.12 -3.11 6.28 31.67 0.20 -2.91 16 21 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 22 H 0.02 0.87 7.14 -2.38 -0.02 0.86 16 23 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 24 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.09 2.60 8.07 -2.39 -0.02 2.59 16 26 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 27 H 0.07 1.85 7.70 -2.39 -0.02 1.83 16 28 H 0.04 1.23 7.56 -2.39 -0.02 1.21 16 29 H 0.04 1.92 6.16 -2.39 -0.01 1.91 16 30 H 0.09 2.28 7.56 -2.39 -0.02 2.26 16 31 H 0.03 1.25 7.94 -2.39 -0.02 1.23 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.05 1.42 8.05 -2.39 -0.02 1.41 16 Total: -1.00 -68.05 293.25 0.66 -67.38 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.94 Total: 12.33 kcal Atomic # 6 Polarization: -45.46 SS G_CDS: 2.93 Total: -42.53 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -5.09 Total: -85.21 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.88 Total: 48.03 kcal Total: -68.05 0.66 -67.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984626.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.895 kcal (2) G-P(sol) polarization free energy of solvation -68.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds