Wall clock time and date at job start Mon Mar 30 2020 02:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 H 1.09008 * 110.64130 * 54.29787 * 10 9 7 12 12 C 1.54597 * 110.72470 * 291.14918 * 10 9 7 13 13 C 1.53998 * 105.13851 * 219.68462 * 12 10 9 14 14 N 1.47901 * 107.05868 * 358.77433 * 13 12 10 15 15 C 1.46896 * 111.00204 * 145.84270 * 14 13 12 16 16 C 1.53001 * 109.47243 * 290.12848 * 15 14 13 17 17 C 1.53784 * 113.61151 * 272.49426 * 16 15 14 18 18 C 1.53784 * 87.07842 * 220.02095 * 17 16 15 19 19 C 1.53773 * 87.08179 * 25.43288 * 18 17 16 20 20 C 1.48739 * 105.94139 * 25.20124 * 14 13 12 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 24 24 H 1.09003 * 110.30609 * 338.59613 * 12 10 9 25 25 H 1.08995 * 110.30860 * 100.77011 * 12 10 9 26 26 H 1.08999 * 109.91510 * 118.12701 * 13 12 10 27 27 H 1.09000 * 109.91329 * 239.22356 * 13 12 10 28 28 H 1.08997 * 109.47000 * 50.12761 * 15 14 13 29 29 H 1.08998 * 109.46988 * 170.12451 * 15 14 13 30 30 H 1.08998 * 112.85060 * 43.80039 * 16 15 14 31 31 H 1.09001 * 113.61531 * 334.56905 * 17 16 15 32 32 H 1.09003 * 113.61141 * 105.46855 * 17 16 15 33 33 H 1.09002 * 113.61095 * 270.88061 * 18 17 16 34 34 H 1.09001 * 113.61117 * 139.98433 * 18 17 16 35 35 H 1.09003 * 113.61478 * 220.01800 * 19 18 17 36 36 H 1.09000 * 113.68978 * 89.12671 * 19 18 17 37 37 H 1.09000 * 110.83332 * 202.57457 * 20 14 13 38 38 H 1.08997 * 110.58321 * 79.38563 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9475 -3.5673 0.8289 12 6 2.9974 -3.7389 -1.3480 13 6 3.1044 -5.2423 -1.6637 14 7 2.4751 -5.9677 -0.5389 15 6 1.8028 -7.1864 -1.0087 16 6 0.5655 -6.8044 -1.8236 17 6 -0.6994 -6.6134 -0.9699 18 6 -1.4708 -7.3225 -2.0956 19 6 -0.1448 -8.0077 -2.4657 20 6 1.5013 -5.0195 0.0650 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8897 24 1 2.4308 -3.2282 -2.1267 25 1 3.9908 -3.3007 -1.2526 26 1 2.5768 -5.4654 -2.5911 27 1 4.1521 -5.5289 -1.7546 28 1 2.4865 -7.7605 -1.6339 29 1 1.5017 -7.7887 -0.1516 30 1 0.7525 -5.9858 -2.5186 31 1 -0.6826 -7.1712 -0.0336 32 1 -0.9828 -5.5693 -0.8368 33 1 -1.8418 -6.6450 -2.8646 34 1 -2.2332 -8.0129 -1.7347 35 1 0.0195 -8.0892 -3.5402 36 1 0.0248 -8.9468 -1.9391 37 1 1.2854 -5.2912 1.0983 38 1 0.5850 -4.9843 -0.5242 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260989887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:58 Heat of formation + Delta-G solvation = 6.281985 kcal Electronic energy + Delta-G solvation = -15855.883672 eV Core-core repulsion = 13505.042924 eV Total energy + Delta-G solvation = -2350.840748 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.85547 -37.47281 -33.87637 -31.79416 -29.14181 -27.53298 -25.70736 -25.44974 -23.10399 -22.34747 -20.13600 -19.41731 -19.24959 -16.73704 -16.06346 -15.55522 -14.74797 -14.36377 -13.80166 -13.69697 -13.31097 -12.82394 -12.52317 -12.29870 -12.13262 -11.78188 -11.59693 -11.10316 -10.96735 -10.83525 -10.67694 -10.62216 -10.44004 -10.16256 -10.11841 -9.99016 -9.72973 -9.43171 -8.46940 -8.28602 -7.94854 -6.31961 -4.00252 3.45713 3.49114 3.64792 4.31010 4.57379 4.60645 4.69036 4.78794 4.84340 5.26813 5.29208 5.43135 5.45895 5.56013 5.61378 5.67923 5.71149 5.74816 5.83965 5.88197 6.01059 6.05082 6.11238 6.24891 6.29048 6.44102 6.48967 6.50736 6.80215 6.85807 6.93433 7.29632 7.39124 7.45826 7.59685 8.27517 8.51621 8.93434 9.71503 11.08563 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.038966 B = 0.006461 C = 0.005878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.406126 B = 4332.470294 C = 4762.506302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 1.070 2.930 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.594 4.594 8 H 0.049 0.951 9 C 0.018 3.982 10 C -0.074 4.074 11 H 0.066 0.934 12 C -0.113 4.113 13 C 0.033 3.967 14 N -0.519 5.519 15 C 0.057 3.943 16 C -0.146 4.146 17 C -0.136 4.136 18 C -0.144 4.144 19 C -0.133 4.133 20 C 0.024 3.976 21 H 0.268 0.732 22 H 0.006 0.994 23 H 0.005 0.995 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.993 -14.525 -4.067 15.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.190 4.190 3 Si 0.898 3.102 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.633 4.633 8 H 0.067 0.933 9 C -0.019 4.019 10 C -0.093 4.093 11 H 0.085 0.915 12 C -0.151 4.151 13 C -0.095 4.095 14 N -0.241 5.241 15 C -0.072 4.072 16 C -0.166 4.166 17 C -0.173 4.173 18 C -0.181 4.181 19 C -0.171 4.171 20 C -0.103 4.103 21 H 0.078 0.922 22 H 0.024 0.976 23 H 0.023 0.977 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.216 -13.057 -3.687 13.622 hybrid contribution -0.401 -1.455 -0.625 1.633 sum 0.816 -14.512 -4.311 15.161 Atomic orbital electron populations 1.70756 1.06905 1.30517 1.47135 1.25823 0.96563 1.02688 0.93966 0.83534 0.74679 0.75226 0.76726 1.21499 1.21519 1.21097 1.22057 0.94293 0.91862 1.55052 0.93283 1.19234 0.94088 0.92877 0.95701 1.22021 0.97554 0.93407 0.96363 0.91540 1.22312 1.00955 0.93202 0.98653 1.22906 0.99070 0.94926 0.92585 1.64894 1.28083 1.05154 1.26008 1.22311 0.93428 0.93704 0.97780 1.23193 0.95664 0.98870 0.98884 1.23114 0.95771 1.01159 0.97276 1.22835 0.96492 0.99676 0.99112 1.22859 0.96458 0.97508 1.00306 1.23714 0.94993 0.92405 0.99211 0.92175 0.97554 0.97663 0.91550 0.91898 0.94317 0.91367 0.91380 0.90927 0.89155 0.90124 0.90848 0.90376 0.91759 0.91915 0.90259 0.91266 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.35 13.65 55.43 0.76 -27.59 16 2 C 0.01 0.37 5.46 -17.82 -0.10 0.28 16 3 Si 1.07 25.67 29.90 -169.99 -5.08 20.59 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.59 -16.97 8.74 -34.44 -0.30 -17.27 16 8 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 9 C 0.02 0.47 3.69 -27.88 -0.10 0.37 16 10 C -0.07 -1.58 3.00 -88.76 -0.27 -1.84 16 11 H 0.07 1.48 8.14 -51.92 -0.42 1.06 16 12 C -0.11 -2.18 6.14 -25.37 -0.16 -2.34 16 13 C 0.03 0.53 6.39 -2.75 -0.02 0.51 16 14 N -0.52 -8.38 5.53 -230.28 -1.27 -9.65 16 15 C 0.06 0.75 5.37 -3.83 -0.02 0.73 16 16 C -0.15 -1.86 2.54 -89.81 -0.23 -2.09 16 17 C -0.14 -1.72 6.02 -25.92 -0.16 -1.88 16 18 C -0.14 -1.57 8.08 -25.92 -0.21 -1.78 16 19 C -0.13 -1.40 7.64 -25.92 -0.20 -1.60 16 20 C 0.02 0.42 5.36 -1.79 -0.01 0.41 16 21 H 0.27 8.25 7.22 -40.82 -0.29 7.95 16 22 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 23 H 0.01 0.14 7.88 -51.93 -0.41 -0.27 16 24 H 0.07 1.36 7.76 -51.93 -0.40 0.96 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.04 0.59 6.26 -51.93 -0.33 0.26 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 29 H 0.07 0.91 7.84 -51.93 -0.41 0.51 16 30 H 0.09 1.30 6.60 -51.93 -0.34 0.96 16 31 H 0.08 0.97 7.90 -51.93 -0.41 0.56 16 32 H 0.07 1.06 6.82 -51.93 -0.35 0.71 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.09 3.84 -51.93 -0.20 0.90 16 LS Contribution 289.90 15.07 4.37 4.37 Total: -1.00 -30.00 289.90 -9.56 -39.56 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.56 Total: -0.78 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: -1.76 Total: -26.49 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: -0.52 Total: -37.24 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.08 Total: 20.59 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.00 -9.56 -39.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260989887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.844 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds