Wall clock time and date at job start Mon Mar 30 2020 02:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 H 1.09008 * 110.64130 * 54.29787 * 10 9 7 12 12 C 1.54597 * 110.72470 * 291.14918 * 10 9 7 13 13 C 1.53998 * 105.13851 * 219.68462 * 12 10 9 14 14 N 1.47901 * 107.05868 * 358.77433 * 13 12 10 15 15 C 1.46896 * 111.00204 * 145.84270 * 14 13 12 16 16 C 1.53001 * 109.47243 * 290.12848 * 15 14 13 17 17 C 1.53784 * 113.61151 * 272.49426 * 16 15 14 18 18 C 1.53784 * 87.07842 * 220.02095 * 17 16 15 19 19 C 1.53773 * 87.08179 * 25.43288 * 18 17 16 20 20 C 1.48739 * 105.94139 * 25.20124 * 14 13 12 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 24 24 H 1.09003 * 110.30609 * 338.59613 * 12 10 9 25 25 H 1.08995 * 110.30860 * 100.77011 * 12 10 9 26 26 H 1.08999 * 109.91510 * 118.12701 * 13 12 10 27 27 H 1.09000 * 109.91329 * 239.22356 * 13 12 10 28 28 H 1.08997 * 109.47000 * 50.12761 * 15 14 13 29 29 H 1.08998 * 109.46988 * 170.12451 * 15 14 13 30 30 H 1.08998 * 112.85060 * 43.80039 * 16 15 14 31 31 H 1.09001 * 113.61531 * 334.56905 * 17 16 15 32 32 H 1.09003 * 113.61141 * 105.46855 * 17 16 15 33 33 H 1.09002 * 113.61095 * 270.88061 * 18 17 16 34 34 H 1.09001 * 113.61117 * 139.98433 * 18 17 16 35 35 H 1.09003 * 113.61478 * 220.01800 * 19 18 17 36 36 H 1.09000 * 113.68978 * 89.12671 * 19 18 17 37 37 H 1.09000 * 110.83332 * 202.57457 * 20 14 13 38 38 H 1.08997 * 110.58321 * 79.38563 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9475 -3.5673 0.8289 12 6 2.9974 -3.7389 -1.3480 13 6 3.1044 -5.2423 -1.6637 14 7 2.4751 -5.9677 -0.5389 15 6 1.8028 -7.1864 -1.0087 16 6 0.5655 -6.8044 -1.8236 17 6 -0.6994 -6.6134 -0.9699 18 6 -1.4708 -7.3225 -2.0956 19 6 -0.1448 -8.0077 -2.4657 20 6 1.5013 -5.0195 0.0650 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8897 24 1 2.4308 -3.2282 -2.1267 25 1 3.9908 -3.3007 -1.2526 26 1 2.5768 -5.4654 -2.5911 27 1 4.1521 -5.5289 -1.7546 28 1 2.4865 -7.7605 -1.6339 29 1 1.5017 -7.7887 -0.1516 30 1 0.7525 -5.9858 -2.5186 31 1 -0.6826 -7.1712 -0.0336 32 1 -0.9828 -5.5693 -0.8368 33 1 -1.8418 -6.6450 -2.8646 34 1 -2.2332 -8.0129 -1.7347 35 1 0.0195 -8.0892 -3.5402 36 1 0.0248 -8.9468 -1.9391 37 1 1.2854 -5.2912 1.0983 38 1 0.5850 -4.9843 -0.5242 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260989887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:57 Heat of formation + Delta-G solvation = -11.650112 kcal Electronic energy + Delta-G solvation = -15856.661266 eV Core-core repulsion = 13505.042924 eV Total energy + Delta-G solvation = -2351.618342 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.03340 -38.74248 -35.84708 -33.53326 -30.69497 -28.98795 -27.20691 -26.54342 -24.82880 -23.89053 -21.39441 -21.01677 -20.34251 -18.87178 -17.26785 -16.91449 -16.01924 -15.69563 -15.55499 -15.00331 -14.86957 -14.56607 -14.01496 -13.74248 -13.34548 -13.21980 -13.00936 -12.71226 -12.47350 -12.38237 -12.08739 -11.96057 -11.83843 -11.67430 -11.53638 -11.36491 -11.16737 -11.07886 -10.59853 -10.53734 -9.21753 -8.68168 -6.37676 1.51080 1.60405 1.78021 2.56010 3.07691 3.16334 3.62801 3.70289 3.79630 3.85724 3.87806 3.95291 4.08545 4.33400 4.45347 4.51708 4.57393 4.70999 4.73506 4.80929 4.82507 4.87176 4.93982 4.96292 5.00736 5.04234 5.09806 5.15436 5.22022 5.31902 5.37586 5.54149 5.57826 5.92410 6.01382 6.17043 6.20494 6.59224 7.43669 8.72460 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.038966 B = 0.006461 C = 0.005878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.406126 B = 4332.470294 C = 4762.506302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.041 4.041 3 Si 1.119 2.881 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.283 1.283 7 C -0.607 4.607 8 H 0.049 0.951 9 C 0.025 3.975 10 C -0.076 4.076 11 H 0.055 0.945 12 C -0.111 4.111 13 C 0.042 3.958 14 N -0.522 5.522 15 C 0.058 3.942 16 C -0.149 4.149 17 C -0.143 4.143 18 C -0.141 4.141 19 C -0.118 4.118 20 C 0.035 3.965 21 H 0.254 0.746 22 H -0.016 1.016 23 H -0.015 1.015 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.140 -15.988 -4.570 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.238 4.238 3 Si 0.940 3.060 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.209 1.209 7 C -0.645 4.645 8 H 0.068 0.932 9 C -0.012 4.012 10 C -0.095 4.095 11 H 0.074 0.926 12 C -0.149 4.149 13 C -0.086 4.086 14 N -0.245 5.245 15 C -0.071 4.071 16 C -0.169 4.169 17 C -0.180 4.180 18 C -0.178 4.178 19 C -0.156 4.156 20 C -0.093 4.093 21 H 0.063 0.937 22 H 0.002 0.998 23 H 0.003 0.997 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.368 -14.556 -4.191 15.331 hybrid contribution -0.786 -1.024 -0.455 1.369 sum 1.582 -15.580 -4.646 16.334 Atomic orbital electron populations 1.70894 1.07976 1.29733 1.49254 1.27420 0.96614 1.06859 0.92910 0.82916 0.74197 0.71086 0.77795 1.19819 1.19372 1.20851 1.22437 0.94537 0.93163 1.54339 0.93248 1.19109 0.94376 0.94223 0.93534 1.21879 0.96770 0.93564 0.97265 0.92632 1.22239 1.00103 0.95863 0.96700 1.22853 1.00487 0.92222 0.93019 1.64898 1.27790 1.05457 1.26346 1.22419 0.93730 0.92347 0.98561 1.23135 0.95552 0.99522 0.98715 1.23147 0.96674 0.99819 0.98399 1.22824 0.97265 0.99656 0.98102 1.22815 0.94860 0.97038 1.00904 1.23515 0.94999 0.91059 0.99684 0.93672 0.99810 0.99652 0.93549 0.91902 0.93159 0.89350 0.89485 0.89835 0.91207 0.89274 0.93687 0.90985 0.90230 0.91031 0.88446 0.91080 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.68 13.65 21.45 0.29 -59.39 16 2 C -0.04 -2.44 5.46 84.65 0.46 -1.98 16 3 Si 1.12 51.41 29.90 68.60 2.05 53.47 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 7 C -0.61 -35.39 8.74 25.60 0.22 -35.17 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 9 C 0.02 1.34 3.69 29.85 0.11 1.45 16 10 C -0.08 -3.27 3.00 -9.59 -0.03 -3.30 16 11 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 12 C -0.11 -4.27 6.14 31.47 0.19 -4.08 16 13 C 0.04 1.27 6.39 86.45 0.55 1.83 16 14 N -0.52 -15.92 5.53 -882.48 -4.88 -20.80 16 15 C 0.06 1.36 5.37 86.30 0.46 1.82 16 16 C -0.15 -3.54 2.54 -10.27 -0.03 -3.57 16 17 C -0.14 -3.52 6.02 31.12 0.19 -3.33 16 18 C -0.14 -2.85 8.08 31.12 0.25 -2.60 16 19 C -0.12 -2.14 7.64 31.12 0.24 -1.90 16 20 C 0.03 1.25 5.36 86.61 0.46 1.71 16 21 H 0.25 16.34 7.22 -92.71 -0.67 15.67 16 22 H -0.02 -0.94 8.01 -2.39 -0.02 -0.96 16 23 H -0.01 -0.84 7.88 -2.38 -0.02 -0.86 16 24 H 0.05 1.94 7.76 -2.39 -0.02 1.92 16 25 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.05 1.43 6.26 -2.39 -0.01 1.41 16 27 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.09 1.78 8.08 -2.39 -0.02 1.76 16 29 H 0.08 1.83 7.84 -2.39 -0.02 1.81 16 30 H 0.07 1.96 6.60 -2.39 -0.02 1.95 16 31 H 0.09 2.02 7.90 -2.39 -0.02 2.00 16 32 H 0.04 1.35 6.82 -2.39 -0.02 1.33 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.10 1.45 8.10 -2.39 -0.02 1.44 16 37 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.06 2.20 3.84 -2.39 -0.01 2.19 16 Total: -1.00 -65.23 289.90 1.66 -63.57 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 1.10 Total: 12.28 kcal Atomic # 6 Polarization: -52.22 SS G_CDS: 3.09 Total: -49.13 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -4.59 Total: -80.19 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.05 Total: 53.47 kcal Total: -65.23 1.66 -63.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260989887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.916 kcal (2) G-P(sol) polarization free energy of solvation -65.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds