Wall clock time and date at job start Mon Mar 30 2020 02:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 119.99990 * 2 1 4 4 H 1.48504 * 109.47331 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47368 * 300.00206 * 3 2 1 6 6 H 1.48499 * 109.47111 * 60.00293 * 3 2 1 7 7 C 1.37877 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00320 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00231 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47282 * 180.02562 * 9 7 2 11 11 H 1.08991 * 110.27401 * 307.08922 * 10 9 7 12 12 C 1.54601 * 110.39039 * 69.23776 * 10 9 7 13 13 C 1.54939 * 102.91909 * 140.91683 * 12 10 9 14 14 N 1.48528 * 103.22676 * 322.58057 * 13 12 10 15 15 C 1.46905 * 110.99905 * 159.72078 * 14 13 12 16 16 C 1.53006 * 109.46684 * 52.60484 * 15 14 13 17 17 C 1.53772 * 113.61475 * 272.49603 * 16 15 14 18 18 C 1.53781 * 87.08354 * 220.02318 * 17 16 15 19 19 C 1.53781 * 113.61135 * 174.99698 * 16 15 14 20 20 C 1.47901 * 105.82055 * 39.21164 * 14 13 12 21 21 H 0.96996 * 120.00162 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47153 * 60.00330 * 9 7 2 23 23 H 1.09002 * 109.47200 * 300.00547 * 9 7 2 24 24 H 1.08997 * 110.71714 * 259.27391 * 12 10 9 25 25 H 1.08998 * 110.72200 * 22.37764 * 12 10 9 26 26 H 1.09001 * 110.66091 * 204.14661 * 13 12 10 27 27 H 1.09003 * 110.66526 * 81.01916 * 13 12 10 28 28 H 1.08995 * 109.47608 * 292.60856 * 15 14 13 29 29 H 1.09000 * 109.47033 * 172.60396 * 15 14 13 30 30 H 1.09000 * 112.84759 * 43.80600 * 16 15 14 31 31 H 1.09000 * 113.61922 * 334.57064 * 17 16 15 32 32 H 1.08999 * 113.61689 * 105.47008 * 17 16 15 33 33 H 1.09005 * 113.61134 * 270.88438 * 18 17 16 34 34 H 1.08994 * 113.69575 * 139.99585 * 18 17 16 35 35 H 1.09000 * 113.61578 * 254.52872 * 19 16 15 36 36 H 1.09003 * 113.61302 * 25.43614 * 19 16 15 37 37 H 1.09002 * 109.92065 * 94.02217 * 20 14 13 38 38 H 1.09005 * 109.91644 * 215.11391 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9594 -3.5485 -0.8161 12 6 2.9859 -3.7377 1.3545 13 6 3.0791 -5.2624 1.6137 14 7 1.7811 -5.7737 1.1042 15 6 1.8578 -7.2127 0.8184 16 6 2.3919 -7.9492 2.0486 17 6 3.9266 -8.0283 2.1010 18 6 3.7565 -9.4679 2.6143 19 6 2.3965 -9.4794 1.8965 20 6 1.4992 -5.0033 -0.1264 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 3.9802 -3.2983 1.2755 25 1 2.4090 -3.2451 2.1372 26 1 3.1811 -5.4657 2.6797 27 1 3.9093 -5.6972 1.0569 28 1 2.5278 -7.3805 -0.0248 29 1 0.8642 -7.5878 0.5732 30 1 1.9390 -7.6042 2.9781 31 1 4.4008 -7.9673 1.1215 32 1 4.3739 -7.3542 2.8315 33 1 3.6781 -9.5381 3.6993 34 1 4.4772 -10.1702 2.1958 35 1 1.6085 -9.9768 2.4619 36 1 2.4523 -9.8151 0.8609 37 1 1.8612 -5.5493 -0.9975 38 1 0.4272 -4.8281 -0.2174 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260989889.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:00 Heat of formation + Delta-G solvation = 4.411805 kcal Electronic energy + Delta-G solvation = -15487.623144 eV Core-core repulsion = 13136.701299 eV Total energy + Delta-G solvation = -2350.921845 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.54313 -37.68661 -33.55515 -31.76282 -29.14702 -27.79415 -25.98729 -25.39194 -22.80730 -22.31186 -20.24306 -19.50283 -18.96731 -16.40560 -16.05325 -15.19852 -14.87499 -14.51214 -14.12216 -13.84112 -12.99599 -12.55032 -12.52991 -12.31556 -12.05562 -11.99615 -11.45188 -11.17060 -11.05539 -10.83151 -10.73414 -10.58386 -10.38060 -10.25380 -10.15249 -10.00961 -9.64163 -9.09445 -8.92588 -8.30161 -7.97245 -5.94593 -3.96214 3.33657 3.41194 3.44998 4.28649 4.49995 4.56199 4.65970 4.75557 4.82331 5.31708 5.38042 5.42864 5.47648 5.54744 5.62741 5.67546 5.76003 5.76958 5.80337 5.84917 5.94667 6.01914 6.12542 6.20693 6.33236 6.44690 6.49629 6.56576 6.86393 6.96523 7.21781 7.38276 7.50515 7.73450 7.91664 8.06496 8.48947 9.10769 9.67345 11.16769 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.068670 B = 0.005058 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.646711 B = 5534.641384 C = 5772.581552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.032 3.968 10 C -0.090 4.090 11 H 0.058 0.942 12 C -0.107 4.107 13 C 0.036 3.964 14 N -0.516 5.516 15 C 0.056 3.944 16 C -0.106 4.106 17 C -0.138 4.138 18 C -0.143 4.143 19 C -0.136 4.136 20 C 0.039 3.961 21 H 0.259 0.741 22 H 0.014 0.986 23 H 0.021 0.979 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.030 0.970 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.030 0.970 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.173 -16.441 3.429 17.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.072 0.928 9 C -0.005 4.005 10 C -0.109 4.109 11 H 0.076 0.924 12 C -0.145 4.145 13 C -0.092 4.092 14 N -0.240 5.240 15 C -0.072 4.072 16 C -0.124 4.124 17 C -0.176 4.176 18 C -0.181 4.181 19 C -0.174 4.174 20 C -0.088 4.088 21 H 0.069 0.931 22 H 0.032 0.968 23 H 0.040 0.960 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.048 0.952 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.603 -16.266 3.802 17.619 hybrid contribution 1.036 0.822 -0.696 1.494 sum 6.639 -15.444 3.106 17.095 Atomic orbital electron populations 1.69976 1.06015 1.26340 1.51198 1.25013 0.94795 0.99128 0.95539 0.86590 0.80120 0.84087 0.77515 1.19820 1.21126 1.21074 1.21280 0.92963 0.91029 1.49994 0.92757 1.19167 0.93345 0.90681 0.97284 1.22078 0.98049 0.94569 0.96203 0.92378 1.22453 1.00130 0.93209 0.98706 1.23303 0.90125 0.96249 0.99495 1.64800 1.29630 1.02063 1.27462 1.22273 1.00233 0.89198 0.95514 1.22575 0.95784 0.94570 0.99501 1.23075 0.96516 0.96623 1.01357 1.22808 0.97597 0.97440 1.00223 1.22912 0.97508 0.96297 1.00721 1.23061 1.01579 0.94589 0.89585 0.93149 0.96778 0.96047 0.92153 0.90558 0.91023 0.94585 0.95182 0.91062 0.88503 0.90499 0.91402 0.90356 0.91828 0.91594 0.90366 0.95214 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.51 -14.56 8.73 -34.44 -0.30 -14.86 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.03 0.84 4.14 -27.88 -0.12 0.73 16 10 C -0.09 -1.89 2.94 -89.26 -0.26 -2.15 16 11 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 12 C -0.11 -2.05 6.24 -24.87 -0.16 -2.20 16 13 C 0.04 0.57 4.79 -1.90 -0.01 0.56 16 14 N -0.52 -8.58 5.40 -230.45 -1.24 -9.83 16 15 C 0.06 0.76 4.94 -3.82 -0.02 0.74 16 16 C -0.11 -1.21 3.16 -89.81 -0.28 -1.49 16 17 C -0.14 -1.45 5.62 -25.92 -0.15 -1.59 16 18 C -0.14 -1.29 8.08 -25.92 -0.21 -1.49 16 19 C -0.14 -1.29 7.64 -25.92 -0.20 -1.49 16 20 C 0.04 0.72 6.35 -2.75 -0.02 0.71 16 21 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 22 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.02 0.60 8.00 -51.93 -0.42 0.18 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.08 1.60 7.77 -51.93 -0.40 1.20 16 26 H 0.07 1.06 7.37 -51.93 -0.38 0.68 16 27 H 0.04 0.54 7.11 -51.93 -0.37 0.17 16 28 H 0.03 0.40 7.51 -51.93 -0.39 0.01 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.08 0.82 7.83 -51.93 -0.41 0.42 16 32 H 0.07 0.72 7.61 -51.93 -0.40 0.32 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.03 0.50 7.57 -51.93 -0.39 0.11 16 38 H 0.08 1.51 7.69 -51.93 -0.40 1.11 16 LS Contribution 295.37 15.07 4.45 4.45 Total: -1.00 -29.62 295.37 -9.79 -39.40 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -6.90 Total: -3.34 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -1.81 Total: -21.03 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: -0.51 Total: -36.31 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.62 -9.79 -39.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260989889.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.815 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds