Wall clock time and date at job start Mon Mar 30 2020 02:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 119.99990 * 2 1 4 4 H 1.48504 * 109.47331 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47368 * 300.00206 * 3 2 1 6 6 H 1.48499 * 109.47111 * 60.00293 * 3 2 1 7 7 C 1.37877 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00320 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00231 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47282 * 180.02562 * 9 7 2 11 11 H 1.08991 * 110.27401 * 307.08922 * 10 9 7 12 12 C 1.54601 * 110.39039 * 69.23776 * 10 9 7 13 13 C 1.54939 * 102.91909 * 140.91683 * 12 10 9 14 14 N 1.48528 * 103.22676 * 322.58057 * 13 12 10 15 15 C 1.46905 * 110.99905 * 159.72078 * 14 13 12 16 16 C 1.53006 * 109.46684 * 52.60484 * 15 14 13 17 17 C 1.53772 * 113.61475 * 272.49603 * 16 15 14 18 18 C 1.53781 * 87.08354 * 220.02318 * 17 16 15 19 19 C 1.53781 * 113.61135 * 174.99698 * 16 15 14 20 20 C 1.47901 * 105.82055 * 39.21164 * 14 13 12 21 21 H 0.96996 * 120.00162 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47153 * 60.00330 * 9 7 2 23 23 H 1.09002 * 109.47200 * 300.00547 * 9 7 2 24 24 H 1.08997 * 110.71714 * 259.27391 * 12 10 9 25 25 H 1.08998 * 110.72200 * 22.37764 * 12 10 9 26 26 H 1.09001 * 110.66091 * 204.14661 * 13 12 10 27 27 H 1.09003 * 110.66526 * 81.01916 * 13 12 10 28 28 H 1.08995 * 109.47608 * 292.60856 * 15 14 13 29 29 H 1.09000 * 109.47033 * 172.60396 * 15 14 13 30 30 H 1.09000 * 112.84759 * 43.80600 * 16 15 14 31 31 H 1.09000 * 113.61922 * 334.57064 * 17 16 15 32 32 H 1.08999 * 113.61689 * 105.47008 * 17 16 15 33 33 H 1.09005 * 113.61134 * 270.88438 * 18 17 16 34 34 H 1.08994 * 113.69575 * 139.99585 * 18 17 16 35 35 H 1.09000 * 113.61578 * 254.52872 * 19 16 15 36 36 H 1.09003 * 113.61302 * 25.43614 * 19 16 15 37 37 H 1.09002 * 109.92065 * 94.02217 * 20 14 13 38 38 H 1.09005 * 109.91644 * 215.11391 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9594 -3.5485 -0.8161 12 6 2.9859 -3.7377 1.3545 13 6 3.0791 -5.2624 1.6137 14 7 1.7811 -5.7737 1.1042 15 6 1.8578 -7.2127 0.8184 16 6 2.3919 -7.9492 2.0486 17 6 3.9266 -8.0283 2.1010 18 6 3.7565 -9.4679 2.6143 19 6 2.3965 -9.4794 1.8965 20 6 1.4992 -5.0033 -0.1264 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 3.9802 -3.2983 1.2755 25 1 2.4090 -3.2451 2.1372 26 1 3.1811 -5.4657 2.6797 27 1 3.9093 -5.6972 1.0569 28 1 2.5278 -7.3805 -0.0248 29 1 0.8642 -7.5878 0.5732 30 1 1.9390 -7.6042 2.9781 31 1 4.4008 -7.9673 1.1215 32 1 4.3739 -7.3542 2.8315 33 1 3.6781 -9.5381 3.6993 34 1 4.4772 -10.1702 2.1958 35 1 1.6085 -9.9768 2.4619 36 1 2.4523 -9.8151 0.8609 37 1 1.8612 -5.5493 -0.9975 38 1 0.4272 -4.8281 -0.2174 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260989889.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:00 Heat of formation + Delta-G solvation = -13.003025 kcal Electronic energy + Delta-G solvation = -15488.378307 eV Core-core repulsion = 13136.701299 eV Total energy + Delta-G solvation = -2351.677009 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.63877 -38.89300 -35.47515 -33.52993 -30.72817 -29.21460 -27.42455 -26.39722 -24.37731 -23.78341 -21.51525 -20.78416 -20.20988 -18.51046 -17.16424 -16.74431 -16.26069 -15.93439 -15.26180 -15.09285 -14.58327 -14.30273 -13.91705 -13.62149 -13.31389 -13.21567 -12.95665 -12.68177 -12.61385 -12.45284 -12.19849 -12.04749 -11.97840 -11.41123 -11.37268 -11.14784 -11.04549 -11.00171 -10.82542 -10.53397 -9.26717 -8.17204 -6.27535 1.40211 1.40417 1.53597 2.42195 3.09787 3.16066 3.72459 3.79797 3.87412 3.94984 4.02912 4.07616 4.16423 4.41210 4.49936 4.59468 4.68736 4.76126 4.82201 4.89031 4.89870 4.96061 5.02070 5.05347 5.12074 5.15251 5.21594 5.33123 5.40214 5.44911 5.53789 5.64861 5.69594 5.85343 6.06876 6.24833 6.29929 6.88925 7.41293 8.95084 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.068670 B = 0.005058 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.646711 B = 5534.641384 C = 5772.581552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.963 3.037 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.041 3.959 10 C -0.088 4.088 11 H 0.060 0.940 12 C -0.106 4.106 13 C 0.051 3.949 14 N -0.531 5.531 15 C 0.057 3.943 16 C -0.110 4.110 17 C -0.140 4.140 18 C -0.136 4.136 19 C -0.130 4.130 20 C 0.047 3.953 21 H 0.262 0.738 22 H -0.015 1.015 23 H -0.011 1.011 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.086 0.914 27 H 0.054 0.946 28 H 0.037 0.963 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.048 0.952 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.051 -17.471 3.692 19.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.569 4.569 8 H 0.078 0.922 9 C 0.004 3.996 10 C -0.107 4.107 11 H 0.078 0.922 12 C -0.144 4.144 13 C -0.076 4.076 14 N -0.255 5.255 15 C -0.071 4.071 16 C -0.129 4.129 17 C -0.177 4.177 18 C -0.173 4.173 19 C -0.168 4.168 20 C -0.081 4.081 21 H 0.071 0.929 22 H 0.004 0.996 23 H 0.007 0.993 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.493 -17.315 4.068 19.300 hybrid contribution 0.399 1.123 -0.781 1.425 sum 7.892 -16.192 3.287 18.311 Atomic orbital electron populations 1.70116 1.07859 1.27542 1.52138 1.25972 0.95698 1.03303 0.94976 0.85426 0.79154 0.78961 0.77670 1.18477 1.20498 1.20523 1.21663 0.93405 0.92077 1.49720 0.92161 1.19003 0.93667 0.92704 0.94267 1.21941 0.97182 0.93993 0.97599 0.92181 1.22388 0.99672 0.95833 0.96539 1.23212 0.90335 0.93456 1.00643 1.64763 1.30385 1.03821 1.26536 1.22348 1.00667 0.87175 0.96883 1.22570 0.96527 0.95806 0.97948 1.23085 0.95417 0.97742 1.01466 1.22783 0.97360 0.96565 1.00603 1.22902 0.98127 0.94485 1.01329 1.22852 1.00097 0.93750 0.91375 0.92916 0.99617 0.99306 0.91298 0.93150 0.89573 0.92782 0.94527 0.91055 0.89490 0.90490 0.91515 0.89756 0.90704 0.90970 0.89802 0.93336 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.28 13.29 21.45 0.28 -58.00 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.53 -30.57 8.73 25.60 0.22 -30.35 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.04 2.22 4.14 29.85 0.12 2.34 16 10 C -0.09 -3.75 2.94 -9.91 -0.03 -3.78 16 11 H 0.06 2.51 8.14 -2.39 -0.02 2.50 16 12 C -0.11 -4.03 6.24 31.80 0.20 -3.83 16 13 C 0.05 1.53 4.79 86.65 0.42 1.94 16 14 N -0.53 -17.16 5.40 -882.99 -4.76 -21.92 16 15 C 0.06 1.44 4.94 86.30 0.43 1.87 16 16 C -0.11 -2.27 3.16 -10.27 -0.03 -2.31 16 17 C -0.14 -2.54 5.62 31.12 0.17 -2.37 16 18 C -0.14 -2.03 8.08 31.12 0.25 -1.78 16 19 C -0.13 -2.12 7.64 31.12 0.24 -1.88 16 20 C 0.05 1.73 6.35 86.45 0.55 2.28 16 21 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 22 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 23 H -0.01 -0.69 8.00 -2.39 -0.02 -0.71 16 24 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.05 2.15 7.77 -2.39 -0.02 2.13 16 26 H 0.09 2.37 7.37 -2.39 -0.02 2.35 16 27 H 0.05 1.46 7.11 -2.39 -0.02 1.44 16 28 H 0.04 0.89 7.51 -2.39 -0.02 0.87 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.08 1.41 7.83 -2.39 -0.02 1.40 16 32 H 0.07 1.23 7.61 -2.39 -0.02 1.21 16 33 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.28 8.10 -2.39 -0.02 1.27 16 37 H 0.05 1.59 7.57 -2.39 -0.02 1.57 16 38 H 0.06 2.34 7.69 -2.38 -0.02 2.32 16 Total: -1.00 -64.23 295.37 1.54 -62.69 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.99 Total: 7.76 kcal Atomic # 6 Polarization: -40.52 SS G_CDS: 3.00 Total: -37.52 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -4.48 Total: -79.92 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -64.23 1.54 -62.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260989889.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.689 kcal (2) G-P(sol) polarization free energy of solvation -64.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds