Wall clock time and date at job start Mon Mar 30 2020 02:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00196 * 2 1 4 4 H 1.48500 * 109.47143 * 270.00013 * 3 2 1 5 5 H 1.48502 * 109.47160 * 30.00195 * 3 2 1 6 6 H 1.48502 * 109.47141 * 150.00451 * 3 2 1 7 7 C 1.37882 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00485 * 173.62767 * 7 2 1 9 9 C 1.50701 * 119.99632 * 353.63797 * 7 2 1 10 10 C 1.53001 * 109.51141 * 62.73009 * 9 7 2 11 11 N 1.46903 * 109.47078 * 188.90730 * 10 9 7 12 12 C 1.53146 * 109.50578 * 302.63896 * 9 7 2 13 13 C 1.52969 * 109.42804 * 297.84703 * 12 9 7 14 14 C 1.52963 * 109.70018 * 298.29895 * 13 12 9 15 15 C 1.53145 * 109.43152 * 61.70515 * 14 13 12 16 16 C 1.52724 * 109.54263 * 182.84596 * 9 7 2 17 17 C 1.53396 * 113.54727 * 292.54057 * 16 9 7 18 18 C 1.53843 * 86.98532 * 220.18322 * 17 16 9 19 19 C 1.53419 * 113.50882 * 194.68878 * 16 9 7 20 20 H 0.97000 * 119.99721 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.46798 * 68.91517 * 10 9 7 22 22 H 1.08994 * 109.47129 * 308.91198 * 10 9 7 23 23 H 1.00901 * 110.99364 * 66.88885 * 11 10 9 24 24 H 1.00897 * 110.99713 * 190.84195 * 11 10 9 25 25 H 1.08997 * 109.47524 * 57.83672 * 12 9 7 26 26 H 1.09001 * 109.47703 * 177.85888 * 12 9 7 27 27 H 1.08996 * 109.43201 * 58.37473 * 13 12 9 28 28 H 1.09004 * 109.42978 * 178.27560 * 13 12 9 29 29 H 1.09001 * 109.47849 * 181.68757 * 14 13 12 30 30 H 1.09000 * 109.48403 * 301.70840 * 14 13 12 31 31 H 1.08995 * 109.50997 * 62.10186 * 15 14 13 32 32 H 1.08996 * 109.51072 * 182.24656 * 15 14 13 33 33 H 1.08998 * 113.62654 * 334.71012 * 17 16 9 34 34 H 1.09003 * 113.63012 * 105.65482 * 17 16 9 35 35 H 1.09000 * 113.60410 * 270.59834 * 18 17 16 36 36 H 1.09002 * 113.68502 * 139.73769 * 18 17 16 37 37 H 1.08997 * 113.62909 * 254.37789 * 19 16 9 38 38 H 1.09001 * 113.62870 * 25.33328 * 19 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0795 -1.1970 -0.1043 9 6 1.2579 -2.4952 0.1435 10 6 0.3113 -2.6754 -1.0449 11 7 -0.5660 -3.8283 -0.8016 12 6 0.4491 -2.4794 1.4438 13 6 1.4018 -2.3554 2.6342 14 6 2.3370 -3.5652 2.6744 15 6 3.1796 -3.6004 1.3961 16 6 2.2527 -3.6534 0.1834 17 6 2.9911 -3.8730 -1.1431 18 6 2.8267 -5.3817 -0.8912 19 6 1.6023 -5.0263 -0.0303 20 1 -0.4850 0.8401 0.0004 21 1 0.8934 -2.8467 -1.9504 22 1 -0.2942 -1.7773 -1.1666 23 1 -1.1955 -3.6480 -0.0339 24 1 -1.0755 -4.0774 -1.6361 25 1 -0.2351 -1.6309 1.4359 26 1 -0.1204 -3.4049 1.5289 27 1 1.9914 -1.4443 2.5333 28 1 0.8245 -2.3133 3.5578 29 1 2.9940 -3.4881 3.5407 30 1 1.7467 -4.4787 2.7460 31 1 3.7978 -2.7043 1.3428 32 1 3.8180 -4.4838 1.4051 33 1 2.4423 -3.5129 -2.0133 34 1 4.0281 -3.5376 -1.1266 35 1 3.6468 -5.8213 -0.3234 36 1 2.5798 -5.9509 -1.7875 37 1 1.5224 -5.6186 0.8813 38 1 0.6697 -4.9852 -0.5930 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260993690.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:32 Heat of formation + Delta-G solvation = 16.992460 kcal Electronic energy + Delta-G solvation = -17254.476815 eV Core-core repulsion = 14904.100509 eV Total energy + Delta-G solvation = -2350.376307 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.76821 -34.92382 -33.68194 -32.09884 -28.97323 -27.88129 -24.83074 -24.19734 -23.38810 -22.00423 -19.76733 -19.07509 -16.94314 -15.69194 -15.27685 -14.76012 -14.28546 -13.86142 -13.53318 -13.26725 -12.73768 -12.22082 -12.03415 -11.67065 -11.39707 -11.13095 -10.92653 -10.65574 -10.59879 -10.44429 -10.18637 -10.09990 -9.86902 -9.62554 -9.46290 -9.22449 -8.92300 -8.34044 -8.27815 -8.15663 -7.13347 -5.90227 -3.98219 3.30148 3.38099 3.42340 4.45788 5.29016 5.66921 5.70711 5.74994 5.76936 5.88871 6.04467 6.16056 6.35739 6.43781 6.51470 6.58983 6.68325 6.77975 6.79309 6.86981 6.89004 6.95462 7.02842 7.14873 7.20407 7.35158 7.44408 7.52251 7.59376 7.65238 7.83663 7.86068 8.13077 8.18113 8.24017 8.37203 8.65840 9.03701 9.64887 11.07140 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.027525 B = 0.012817 C = 0.012068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.999433 B = 2184.012915 C = 2319.610533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.880 3.120 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.487 4.487 8 H 0.054 0.946 9 C 0.101 3.899 10 C 0.057 3.943 11 N -0.838 5.838 12 C -0.102 4.102 13 C -0.105 4.105 14 C -0.108 4.108 15 C -0.085 4.085 16 C -0.050 4.050 17 C -0.123 4.123 18 C -0.152 4.152 19 C -0.171 4.171 20 H 0.256 0.744 21 H 0.044 0.956 22 H 0.069 0.931 23 H 0.332 0.668 24 H 0.314 0.686 25 H 0.081 0.919 26 H 0.026 0.974 27 H 0.065 0.935 28 H 0.028 0.972 29 H 0.037 0.963 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.045 0.955 37 H 0.031 0.969 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.674 -6.072 0.435 6.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.526 4.526 8 H 0.072 0.928 9 C 0.100 3.900 10 C -0.072 4.072 11 N -0.365 5.365 12 C -0.140 4.140 13 C -0.142 4.142 14 C -0.146 4.146 15 C -0.123 4.123 16 C -0.050 4.050 17 C -0.160 4.160 18 C -0.190 4.190 19 C -0.208 4.208 20 H 0.067 0.933 21 H 0.062 0.938 22 H 0.087 0.913 23 H 0.146 0.854 24 H 0.124 0.876 25 H 0.100 0.900 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.199 -6.300 0.597 6.441 hybrid contribution 0.004 1.626 -0.134 1.632 sum 1.203 -4.674 0.463 4.849 Atomic orbital electron populations 1.69787 1.05679 1.25853 1.51701 1.24890 0.94731 0.98579 0.95433 0.86776 0.80135 0.84255 0.77929 1.21018 1.21459 1.20051 1.21135 0.93295 0.90268 1.47903 0.92806 1.17834 0.90469 0.91121 0.90588 1.22218 0.95390 0.90705 0.98880 1.59138 1.25853 1.41783 1.09758 1.21469 0.98017 0.99643 0.94880 1.21365 0.97704 0.97885 0.97256 1.21438 0.97905 0.98750 0.96459 1.21174 0.96986 0.99589 0.94504 1.21327 0.95600 0.95916 0.92177 1.22811 0.99075 0.94574 0.99520 1.22907 0.99746 0.96774 0.99563 1.24420 1.01356 0.95573 0.99485 0.93342 0.93791 0.91283 0.85437 0.87586 0.90035 0.95581 0.91588 0.95368 0.94386 0.93416 0.92213 0.94585 0.90451 0.93770 0.92719 0.93633 0.95056 0.82494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.38 9.36 55.43 0.52 -22.86 16 2 C 0.06 1.64 5.10 -17.82 -0.09 1.55 16 3 Si 0.88 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.49 -12.35 5.97 -34.44 -0.21 -12.56 16 8 H 0.05 1.41 7.21 -52.49 -0.38 1.04 16 9 C 0.10 2.26 0.07 -155.72 -0.01 2.25 16 10 C 0.06 1.24 5.26 -3.82 -0.02 1.22 16 11 N -0.84 -15.01 5.48 -10.37 -0.06 -15.07 16 12 C -0.10 -2.28 3.93 -26.67 -0.10 -2.39 16 13 C -0.10 -2.22 5.68 -26.77 -0.15 -2.37 16 14 C -0.11 -2.07 5.84 -26.67 -0.16 -2.23 16 15 C -0.09 -1.70 4.76 -26.80 -0.13 -1.83 16 16 C -0.05 -1.03 0.23 -154.37 -0.04 -1.07 16 17 C -0.12 -2.43 6.69 -26.09 -0.17 -2.60 16 18 C -0.15 -2.72 7.73 -25.86 -0.20 -2.92 16 19 C -0.17 -3.26 6.36 -26.08 -0.17 -3.42 16 20 H 0.26 6.61 8.31 -40.82 -0.34 6.28 16 21 H 0.04 0.97 5.80 -51.93 -0.30 0.67 16 22 H 0.07 1.70 5.88 -51.93 -0.31 1.40 16 23 H 0.33 5.97 7.37 -39.29 -0.29 5.68 16 24 H 0.31 4.89 9.08 -39.29 -0.36 4.54 16 25 H 0.08 2.04 6.06 -51.93 -0.31 1.73 16 26 H 0.03 0.55 6.47 -51.93 -0.34 0.21 16 27 H 0.07 1.53 7.23 -51.93 -0.38 1.16 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.89 7.39 -51.93 -0.38 0.51 16 31 H 0.06 1.27 7.32 -51.93 -0.38 0.89 16 32 H 0.04 0.67 7.31 -51.93 -0.38 0.29 16 33 H 0.08 1.59 5.84 -51.93 -0.30 1.29 16 34 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 35 H 0.05 0.94 7.61 -51.93 -0.40 0.54 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.03 0.59 7.36 -51.93 -0.38 0.21 16 38 H 0.16 3.00 4.06 -69.09 -0.28 2.72 16 LS Contribution 266.15 15.07 4.01 4.01 Total: -1.00 -25.18 266.15 -7.98 -33.16 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -5.99 Total: 11.43 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: -1.44 Total: -26.36 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.46 Total: -37.93 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -25.18 -7.98 -33.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993690.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.154 kcal (2) G-P(sol) polarization free energy of solvation -25.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds