Wall clock time and date at job start Mon Mar 30 2020 02:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00196 * 2 1 4 4 H 1.48500 * 109.47143 * 270.00013 * 3 2 1 5 5 H 1.48502 * 109.47160 * 30.00195 * 3 2 1 6 6 H 1.48502 * 109.47141 * 150.00451 * 3 2 1 7 7 C 1.37882 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00485 * 173.62767 * 7 2 1 9 9 C 1.50701 * 119.99632 * 353.63797 * 7 2 1 10 10 C 1.53001 * 109.51141 * 62.73009 * 9 7 2 11 11 N 1.46903 * 109.47078 * 188.90730 * 10 9 7 12 12 C 1.53146 * 109.50578 * 302.63896 * 9 7 2 13 13 C 1.52969 * 109.42804 * 297.84703 * 12 9 7 14 14 C 1.52963 * 109.70018 * 298.29895 * 13 12 9 15 15 C 1.53145 * 109.43152 * 61.70515 * 14 13 12 16 16 C 1.52724 * 109.54263 * 182.84596 * 9 7 2 17 17 C 1.53396 * 113.54727 * 292.54057 * 16 9 7 18 18 C 1.53843 * 86.98532 * 220.18322 * 17 16 9 19 19 C 1.53419 * 113.50882 * 194.68878 * 16 9 7 20 20 H 0.97000 * 119.99721 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.46798 * 68.91517 * 10 9 7 22 22 H 1.08994 * 109.47129 * 308.91198 * 10 9 7 23 23 H 1.00901 * 110.99364 * 66.88885 * 11 10 9 24 24 H 1.00897 * 110.99713 * 190.84195 * 11 10 9 25 25 H 1.08997 * 109.47524 * 57.83672 * 12 9 7 26 26 H 1.09001 * 109.47703 * 177.85888 * 12 9 7 27 27 H 1.08996 * 109.43201 * 58.37473 * 13 12 9 28 28 H 1.09004 * 109.42978 * 178.27560 * 13 12 9 29 29 H 1.09001 * 109.47849 * 181.68757 * 14 13 12 30 30 H 1.09000 * 109.48403 * 301.70840 * 14 13 12 31 31 H 1.08995 * 109.50997 * 62.10186 * 15 14 13 32 32 H 1.08996 * 109.51072 * 182.24656 * 15 14 13 33 33 H 1.08998 * 113.62654 * 334.71012 * 17 16 9 34 34 H 1.09003 * 113.63012 * 105.65482 * 17 16 9 35 35 H 1.09000 * 113.60410 * 270.59834 * 18 17 16 36 36 H 1.09002 * 113.68502 * 139.73769 * 18 17 16 37 37 H 1.08997 * 113.62909 * 254.37789 * 19 16 9 38 38 H 1.09001 * 113.62870 * 25.33328 * 19 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0795 -1.1970 -0.1043 9 6 1.2579 -2.4952 0.1435 10 6 0.3113 -2.6754 -1.0449 11 7 -0.5660 -3.8283 -0.8016 12 6 0.4491 -2.4794 1.4438 13 6 1.4018 -2.3554 2.6342 14 6 2.3370 -3.5652 2.6744 15 6 3.1796 -3.6004 1.3961 16 6 2.2527 -3.6534 0.1834 17 6 2.9911 -3.8730 -1.1431 18 6 2.8267 -5.3817 -0.8912 19 6 1.6023 -5.0263 -0.0303 20 1 -0.4850 0.8401 0.0004 21 1 0.8934 -2.8467 -1.9504 22 1 -0.2942 -1.7773 -1.1666 23 1 -1.1955 -3.6480 -0.0339 24 1 -1.0755 -4.0774 -1.6361 25 1 -0.2351 -1.6309 1.4359 26 1 -0.1204 -3.4049 1.5289 27 1 1.9914 -1.4443 2.5333 28 1 0.8245 -2.3133 3.5578 29 1 2.9940 -3.4881 3.5407 30 1 1.7467 -4.4787 2.7460 31 1 3.7978 -2.7043 1.3428 32 1 3.8180 -4.4838 1.4051 33 1 2.4423 -3.5129 -2.0133 34 1 4.0281 -3.5376 -1.1266 35 1 3.6468 -5.8213 -0.3234 36 1 2.5798 -5.9509 -1.7875 37 1 1.5224 -5.6186 0.8813 38 1 0.6697 -4.9852 -0.5930 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260993690.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:32 Heat of formation + Delta-G solvation = 3.834061 kcal Electronic energy + Delta-G solvation = -17255.047406 eV Core-core repulsion = 14904.100509 eV Total energy + Delta-G solvation = -2350.946898 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.39433 -36.59870 -35.30508 -33.94681 -30.69656 -29.53699 -26.56494 -25.92027 -25.04571 -23.58180 -21.41830 -20.79050 -18.66549 -17.43431 -17.00778 -16.53726 -15.85580 -15.61390 -15.18211 -14.86700 -14.35566 -13.95983 -13.68514 -13.30884 -13.13979 -12.83829 -12.76392 -12.42582 -12.35107 -12.13381 -11.89827 -11.78781 -11.53114 -11.25847 -11.11671 -10.90692 -10.69821 -10.10942 -10.05477 -9.88162 -8.72149 -7.85975 -5.99647 1.38744 1.43817 1.50249 2.49954 3.30481 4.10561 4.14614 4.19269 4.22668 4.35376 4.52784 4.60604 4.74328 4.83521 4.96549 5.02666 5.10055 5.15491 5.16913 5.21514 5.33213 5.37398 5.39842 5.53985 5.57722 5.64385 5.72986 5.82041 5.86414 5.89219 6.00163 6.22340 6.38426 6.46558 6.59890 6.76218 6.87565 7.12591 7.64305 9.06015 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.027525 B = 0.012817 C = 0.012068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.999433 B = 2184.012915 C = 2319.610533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.027 3.973 3 Si 0.922 3.078 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.492 4.492 8 H 0.037 0.963 9 C 0.097 3.903 10 C 0.069 3.931 11 N -0.824 5.824 12 C -0.095 4.095 13 C -0.104 4.104 14 C -0.102 4.102 15 C -0.085 4.085 16 C -0.058 4.058 17 C -0.129 4.129 18 C -0.137 4.137 19 C -0.166 4.166 20 H 0.253 0.747 21 H 0.037 0.963 22 H 0.037 0.963 23 H 0.335 0.665 24 H 0.331 0.669 25 H 0.051 0.949 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.035 0.965 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.939 -7.767 0.759 7.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.171 4.171 3 Si 0.751 3.249 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.531 4.531 8 H 0.055 0.945 9 C 0.096 3.904 10 C -0.061 4.061 11 N -0.352 5.352 12 C -0.133 4.133 13 C -0.142 4.142 14 C -0.139 4.139 15 C -0.122 4.122 16 C -0.059 4.059 17 C -0.166 4.166 18 C -0.174 4.174 19 C -0.203 4.203 20 H 0.062 0.938 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.148 0.852 24 H 0.143 0.857 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.461 -8.004 0.915 8.188 hybrid contribution -0.081 2.166 -0.249 2.182 sum 1.381 -5.838 0.665 6.036 Atomic orbital electron populations 1.69908 1.06187 1.25805 1.52400 1.25345 0.95325 1.00523 0.95880 0.86116 0.79119 0.82061 0.77610 1.21038 1.21560 1.20316 1.21317 0.92649 0.91889 1.47206 0.94460 1.17836 0.90974 0.90749 0.90851 1.21886 0.95269 0.90637 0.98293 1.58995 1.25932 1.39521 1.10739 1.21345 0.97772 0.98810 0.95421 1.21326 0.97740 0.97772 0.97361 1.21386 0.97727 0.97952 0.96837 1.21166 0.96980 0.99371 0.94721 1.21377 0.95628 0.95992 0.92854 1.22806 0.98490 0.96559 0.98729 1.22822 0.99375 0.95228 1.00022 1.24360 1.01845 0.94231 0.99897 0.93781 0.94461 0.94461 0.85170 0.85692 0.93053 0.94343 0.94384 0.94027 0.92432 0.92244 0.94381 0.92730 0.91617 0.94265 0.91532 0.92062 0.94609 0.82457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.23 9.36 21.45 0.20 -48.03 16 2 C 0.03 1.43 5.10 84.66 0.43 1.86 16 3 Si 0.92 43.09 29.54 68.60 2.03 45.12 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.49 -25.24 5.97 25.60 0.15 -25.09 16 8 H 0.04 2.00 7.21 -2.91 -0.02 1.98 16 9 C 0.10 4.31 0.07 -52.97 0.00 4.30 16 10 C 0.07 2.99 5.26 86.30 0.45 3.44 16 11 N -0.82 -28.15 5.48 -186.72 -1.02 -29.17 16 12 C -0.10 -4.21 3.93 30.63 0.12 -4.09 16 13 C -0.10 -4.32 5.68 30.57 0.17 -4.15 16 14 C -0.10 -3.65 5.84 30.63 0.18 -3.47 16 15 C -0.08 -3.24 4.76 30.55 0.15 -3.09 16 16 C -0.06 -2.31 0.23 -52.09 -0.01 -2.32 16 17 C -0.13 -4.91 6.69 31.01 0.21 -4.70 16 18 C -0.14 -4.46 7.73 31.16 0.24 -4.22 16 19 C -0.17 -5.83 6.36 31.02 0.20 -5.63 16 20 H 0.25 13.26 8.31 -92.71 -0.77 12.49 16 21 H 0.04 1.64 5.80 -2.39 -0.01 1.62 16 22 H 0.04 1.86 5.88 -2.39 -0.01 1.84 16 23 H 0.33 11.49 7.37 -89.69 -0.66 10.83 16 24 H 0.33 9.65 9.08 -89.70 -0.81 8.83 16 25 H 0.05 2.58 6.06 -2.39 -0.01 2.57 16 26 H 0.04 1.57 6.47 -2.39 -0.02 1.56 16 27 H 0.04 1.76 7.23 -2.39 -0.02 1.75 16 28 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 2.02 7.39 -2.39 -0.02 2.00 16 31 H 0.04 1.59 7.32 -2.39 -0.02 1.58 16 32 H 0.05 1.87 7.31 -2.39 -0.02 1.85 16 33 H 0.07 2.65 5.84 -2.39 -0.01 2.63 16 34 H 0.04 1.50 8.09 -2.39 -0.02 1.48 16 35 H 0.07 2.02 7.61 -2.39 -0.02 2.01 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.04 1.22 7.36 -2.39 -0.02 1.20 16 38 H 0.16 5.56 4.06 -36.26 -0.15 5.41 16 Total: -1.00 -52.92 266.15 2.94 -49.97 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: -0.55 Total: 29.26 kcal Atomic # 6 Polarization: -49.44 SS G_CDS: 2.29 Total: -47.16 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -0.82 Total: -77.20 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -52.92 2.94 -49.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993690.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.808 kcal (2) G-P(sol) polarization free energy of solvation -52.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds