Wall clock time and date at job start Mon Mar 30 2020 03:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99617 * 2 1 4 4 H 1.48505 * 109.47104 * 239.99423 * 3 2 1 5 5 H 1.48494 * 109.47424 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46803 * 120.00106 * 3 2 1 7 7 C 1.37874 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00372 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99933 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47279 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47118 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.64541 * 54.29813 * 11 10 9 13 13 C 1.54599 * 110.72221 * 291.14436 * 11 10 9 14 14 C 1.53997 * 105.13815 * 219.50567 * 13 11 10 15 15 N 1.47896 * 107.05754 * 358.77976 * 14 13 11 16 16 C 1.46897 * 110.99782 * 145.84347 * 15 14 13 17 17 C 1.53000 * 109.47446 * 69.86880 * 16 15 14 18 18 C 1.53004 * 117.50285 * 243.62113 * 17 16 15 19 19 C 1.52999 * 59.99918 * 252.50821 * 18 17 16 20 20 C 1.49005 * 105.87631 * 25.33099 * 15 14 13 21 21 H 0.96996 * 119.99965 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.46872 * 60.00303 * 9 7 2 23 23 H 1.09002 * 109.47489 * 300.00875 * 9 7 2 24 24 H 1.08993 * 109.47094 * 60.00250 * 10 9 7 25 25 H 1.09004 * 109.47111 * 300.00234 * 10 9 7 26 26 H 1.08999 * 110.30781 * 338.42613 * 13 11 10 27 27 H 1.09002 * 110.30706 * 100.59366 * 13 11 10 28 28 H 1.09008 * 109.91110 * 118.13320 * 14 13 11 29 29 H 1.08993 * 109.91741 * 239.42253 * 14 13 11 30 30 H 1.09006 * 109.47373 * 189.86907 * 16 15 14 31 31 H 1.09002 * 109.47809 * 309.86950 * 16 15 14 32 32 H 1.09001 * 115.55064 * 29.33133 * 17 16 15 33 33 H 1.09000 * 117.49434 * 359.97438 * 18 17 16 34 34 H 1.09001 * 117.49473 * 145.02013 * 18 17 16 35 35 H 1.08999 * 117.49954 * 252.50568 * 19 18 17 36 36 H 1.09004 * 117.49789 * 107.48664 * 19 18 17 37 37 H 1.09000 * 110.86440 * 202.42393 * 20 15 14 38 38 H 1.09003 * 110.68346 * 79.14687 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2454 -3.6621 0.0027 11 6 1.4804 -4.9871 0.0033 12 1 0.7730 -5.0228 -0.8253 13 6 0.7547 -5.1992 1.3518 14 6 0.9202 -6.6976 1.6662 15 7 1.6697 -7.2968 0.5408 16 6 2.5506 -8.3749 1.0096 17 6 1.7035 -9.5702 1.4508 18 6 1.7652 -9.9741 2.9253 19 6 2.4416 -10.8449 1.8646 20 6 2.4601 -6.1857 -0.0601 21 1 -0.4850 0.8400 -0.0004 22 1 0.6242 -2.5575 -0.8881 23 1 0.6247 -2.5563 0.8919 24 1 2.8720 -3.6035 0.8926 25 1 2.8721 -3.6051 -0.8873 26 1 1.2201 -4.5954 2.1309 27 1 -0.3015 -4.9470 1.2568 28 1 1.4795 -6.8228 2.5934 29 1 -0.0586 -7.1690 1.7533 30 1 3.2148 -8.6791 0.2007 31 1 3.1435 -8.0192 1.8522 32 1 0.7493 -9.6856 0.9365 33 1 2.4096 -9.3885 3.5809 34 1 0.8514 -10.3551 3.3813 35 1 1.9729 -11.7988 1.6229 36 1 3.5307 -10.8319 1.8225 37 1 2.7248 -6.4120 -1.0930 38 1 3.3530 -5.9845 0.5317 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260998010.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:00 Heat of formation + Delta-G solvation = 5.354906 kcal Electronic energy + Delta-G solvation = -15102.596970 eV Core-core repulsion = 12751.716021 eV Total energy + Delta-G solvation = -2350.880949 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.11233 -37.13829 -34.07672 -32.25029 -29.90133 -28.34260 -26.06931 -24.06089 -22.53357 -21.47790 -20.81961 -20.45787 -19.01010 -16.36172 -16.07085 -15.65259 -14.83709 -14.51050 -14.38323 -13.63957 -13.41169 -12.73397 -12.65234 -12.35883 -11.79574 -11.74688 -11.56662 -11.20760 -11.17201 -10.95555 -10.86670 -10.50558 -10.46969 -10.36047 -10.05133 -9.95239 -9.59538 -9.19428 -8.97886 -8.31571 -8.28159 -5.96149 -3.98362 3.34963 3.39291 3.41779 3.62690 4.05275 4.48679 4.64087 4.76928 4.88490 5.03136 5.15651 5.32212 5.38938 5.39366 5.44330 5.55570 5.57436 5.67170 5.72208 5.88576 5.91154 5.93096 6.13940 6.14587 6.22391 6.39796 6.48689 6.54631 6.79659 6.94151 7.08412 7.17860 7.25750 7.73025 7.89494 8.05177 8.47755 9.09033 9.65329 11.15057 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.075420 B = 0.004319 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.166622 B = 6481.536383 C = 6589.189894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.023 3.977 10 C -0.102 4.102 11 C -0.087 4.087 12 H 0.077 0.923 13 C -0.124 4.124 14 C 0.041 3.959 15 N -0.518 5.518 16 C 0.077 3.923 17 C -0.141 4.141 18 C -0.184 4.184 19 C -0.181 4.181 20 C 0.038 3.962 21 H 0.260 0.740 22 H 0.015 0.985 23 H 0.017 0.983 24 H 0.045 0.955 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.657 -17.869 3.632 18.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.140 4.140 11 C -0.106 4.106 12 H 0.095 0.905 13 C -0.162 4.162 14 C -0.087 4.087 15 N -0.242 5.242 16 C -0.052 4.052 17 C -0.160 4.160 18 C -0.221 4.221 19 C -0.219 4.219 20 C -0.089 4.089 21 H 0.070 0.930 22 H 0.033 0.967 23 H 0.035 0.965 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.129 0.871 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.152 -17.991 3.258 18.553 hybrid contribution 0.995 1.247 0.675 1.732 sum 4.147 -16.744 3.933 17.693 Atomic orbital electron populations 1.69956 1.06018 1.26606 1.50944 1.25021 0.94835 0.99167 0.95434 0.86684 0.79602 0.83286 0.78574 1.20273 1.21310 1.20310 1.21259 0.92961 0.91280 1.50453 0.92887 1.19087 0.93984 0.91126 0.97238 1.21653 0.98770 0.93495 1.00081 1.22158 0.96737 0.94324 0.97383 0.90459 1.22462 1.01645 0.94040 0.98071 1.22855 0.98616 0.95160 0.92089 1.64827 1.23816 1.08758 1.26799 1.21816 0.93690 0.91069 0.98617 1.22291 1.01486 0.95049 0.97151 1.23041 1.02785 1.04109 0.92166 1.22937 0.99625 0.95039 1.04275 1.23411 0.95531 0.90570 0.99429 0.93008 0.96700 0.96453 0.93577 0.93334 0.91259 0.91115 0.94317 0.90943 0.90683 0.94739 0.87060 0.89083 0.88965 0.88875 0.89002 0.90405 0.93901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.59 4.84 -27.88 -0.14 0.46 16 10 C -0.10 -2.12 4.56 -26.73 -0.12 -2.24 16 11 C -0.09 -1.52 3.05 -88.76 -0.27 -1.79 16 12 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 13 C -0.12 -2.05 5.78 -25.37 -0.15 -2.19 16 14 C 0.04 0.57 6.18 -2.76 -0.02 0.56 16 15 N -0.52 -7.25 5.27 -230.04 -1.21 -8.47 16 16 C 0.08 0.90 5.05 -3.83 -0.02 0.88 16 17 C -0.14 -1.47 5.45 -90.62 -0.49 -1.96 16 18 C -0.18 -1.70 10.18 -26.73 -0.27 -1.97 16 19 C -0.18 -1.57 10.25 -26.73 -0.27 -1.84 16 20 C 0.04 0.56 6.02 -1.63 -0.01 0.55 16 21 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 22 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.02 0.47 7.59 -51.93 -0.39 0.08 16 24 H 0.05 0.95 8.02 -51.93 -0.42 0.53 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.07 1.20 7.77 -51.93 -0.40 0.79 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.04 0.52 7.57 -51.92 -0.39 0.13 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 31 H 0.03 0.41 7.55 -51.93 -0.39 0.02 16 32 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.09 0.84 8.03 -51.93 -0.42 0.42 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.04 0.63 7.94 -51.93 -0.41 0.22 16 LS Contribution 305.37 15.07 4.60 4.60 Total: -1.00 -29.72 305.37 -10.08 -39.80 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -7.02 Total: -3.01 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: -2.17 Total: -23.29 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: -0.48 Total: -34.97 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.72 -10.08 -39.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260998010.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.155 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds