Wall clock time and date at job start Mon Mar 30 2020 03:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99617 * 2 1 4 4 H 1.48505 * 109.47104 * 239.99423 * 3 2 1 5 5 H 1.48494 * 109.47424 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46803 * 120.00106 * 3 2 1 7 7 C 1.37874 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00372 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99933 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47279 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47118 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.64541 * 54.29813 * 11 10 9 13 13 C 1.54599 * 110.72221 * 291.14436 * 11 10 9 14 14 C 1.53997 * 105.13815 * 219.50567 * 13 11 10 15 15 N 1.47896 * 107.05754 * 358.77976 * 14 13 11 16 16 C 1.46897 * 110.99782 * 145.84347 * 15 14 13 17 17 C 1.53000 * 109.47446 * 69.86880 * 16 15 14 18 18 C 1.53004 * 117.50285 * 243.62113 * 17 16 15 19 19 C 1.52999 * 59.99918 * 252.50821 * 18 17 16 20 20 C 1.49005 * 105.87631 * 25.33099 * 15 14 13 21 21 H 0.96996 * 119.99965 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.46872 * 60.00303 * 9 7 2 23 23 H 1.09002 * 109.47489 * 300.00875 * 9 7 2 24 24 H 1.08993 * 109.47094 * 60.00250 * 10 9 7 25 25 H 1.09004 * 109.47111 * 300.00234 * 10 9 7 26 26 H 1.08999 * 110.30781 * 338.42613 * 13 11 10 27 27 H 1.09002 * 110.30706 * 100.59366 * 13 11 10 28 28 H 1.09008 * 109.91110 * 118.13320 * 14 13 11 29 29 H 1.08993 * 109.91741 * 239.42253 * 14 13 11 30 30 H 1.09006 * 109.47373 * 189.86907 * 16 15 14 31 31 H 1.09002 * 109.47809 * 309.86950 * 16 15 14 32 32 H 1.09001 * 115.55064 * 29.33133 * 17 16 15 33 33 H 1.09000 * 117.49434 * 359.97438 * 18 17 16 34 34 H 1.09001 * 117.49473 * 145.02013 * 18 17 16 35 35 H 1.08999 * 117.49954 * 252.50568 * 19 18 17 36 36 H 1.09004 * 117.49789 * 107.48664 * 19 18 17 37 37 H 1.09000 * 110.86440 * 202.42393 * 20 15 14 38 38 H 1.09003 * 110.68346 * 79.14687 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2454 -3.6621 0.0027 11 6 1.4804 -4.9871 0.0033 12 1 0.7730 -5.0228 -0.8253 13 6 0.7547 -5.1992 1.3518 14 6 0.9202 -6.6976 1.6662 15 7 1.6697 -7.2968 0.5408 16 6 2.5506 -8.3749 1.0096 17 6 1.7035 -9.5702 1.4508 18 6 1.7652 -9.9741 2.9253 19 6 2.4416 -10.8449 1.8646 20 6 2.4601 -6.1857 -0.0601 21 1 -0.4850 0.8400 -0.0004 22 1 0.6242 -2.5575 -0.8881 23 1 0.6247 -2.5563 0.8919 24 1 2.8720 -3.6035 0.8926 25 1 2.8721 -3.6051 -0.8873 26 1 1.2201 -4.5954 2.1309 27 1 -0.3015 -4.9470 1.2568 28 1 1.4795 -6.8228 2.5934 29 1 -0.0586 -7.1690 1.7533 30 1 3.2148 -8.6791 0.2007 31 1 3.1435 -8.0192 1.8522 32 1 0.7493 -9.6856 0.9365 33 1 2.4096 -9.3885 3.5809 34 1 0.8514 -10.3551 3.3813 35 1 1.9729 -11.7988 1.6229 36 1 3.5307 -10.8319 1.8225 37 1 2.7248 -6.4120 -1.0930 38 1 3.3530 -5.9845 0.5317 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260998010.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:59 Heat of formation + Delta-G solvation = -11.379754 kcal Electronic energy + Delta-G solvation = -15103.322639 eV Core-core repulsion = 12751.716021 eV Total energy + Delta-G solvation = -2351.606618 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.26103 -38.06119 -35.86138 -34.06671 -31.39508 -29.81687 -27.46724 -25.72274 -23.29541 -22.99584 -22.12450 -21.51935 -20.38393 -18.44132 -17.26268 -16.81102 -16.47650 -15.79978 -15.47776 -14.86617 -14.76483 -14.41381 -14.11891 -13.71841 -13.43868 -13.04347 -12.89668 -12.58326 -12.53190 -12.33739 -12.21911 -12.09725 -12.08102 -11.53984 -11.35338 -11.24921 -11.16809 -10.87520 -10.78456 -10.53307 -9.38684 -8.18887 -6.30260 1.39421 1.42624 1.50577 2.41199 2.85075 3.06625 3.13733 3.70289 3.77670 3.94179 4.02315 4.10649 4.18363 4.31932 4.46025 4.52147 4.63672 4.71268 4.73868 4.77493 4.80334 4.87335 4.88626 5.00205 5.04570 5.16225 5.25544 5.27603 5.31464 5.35301 5.39245 5.54125 5.79906 5.87862 5.92129 6.15780 6.27390 6.87335 7.38839 8.92589 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.075420 B = 0.004319 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.166622 B = 6481.536383 C = 6589.189894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.088 4.088 11 C -0.086 4.086 12 H 0.065 0.935 13 C -0.125 4.125 14 C 0.051 3.949 15 N -0.525 5.525 16 C 0.078 3.922 17 C -0.155 4.155 18 C -0.184 4.184 19 C -0.168 4.168 20 C 0.047 3.953 21 H 0.263 0.737 22 H -0.014 1.014 23 H -0.005 1.005 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.111 -18.762 3.984 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.126 4.126 11 C -0.105 4.105 12 H 0.083 0.917 13 C -0.163 4.163 14 C -0.077 4.077 15 N -0.249 5.249 16 C -0.050 4.050 17 C -0.173 4.173 18 C -0.221 4.221 19 C -0.206 4.206 20 C -0.080 4.080 21 H 0.072 0.928 22 H 0.005 0.995 23 H 0.013 0.987 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.106 0.894 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.617 -18.904 3.612 19.793 hybrid contribution 0.504 1.507 0.565 1.687 sum 5.121 -17.397 4.177 18.610 Atomic orbital electron populations 1.70096 1.07804 1.27776 1.51700 1.25991 0.95774 1.03362 0.94771 0.85517 0.78297 0.78143 0.79195 1.19153 1.20817 1.19162 1.21727 0.93526 0.92625 1.50527 0.92311 1.18978 0.94381 0.92883 0.94720 1.21437 0.97656 0.93196 1.00304 1.22029 0.97056 0.93924 0.97533 0.91655 1.22426 1.00686 0.95990 0.97218 1.22758 0.99348 0.93072 0.92544 1.64842 1.24303 1.08772 1.26944 1.21860 0.93619 0.90640 0.98894 1.22186 1.01388 0.95638 0.98111 1.23100 1.03230 1.04154 0.91609 1.23024 1.00041 0.94681 1.02842 1.23288 0.94809 0.89535 1.00384 0.92807 0.99512 0.98705 0.93271 0.92970 0.92341 0.92238 0.93371 0.90174 0.89965 0.94616 0.87933 0.89082 0.88325 0.87756 0.88246 0.89357 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.55 -31.74 9.11 25.60 0.23 -31.51 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.03 1.48 4.84 29.85 0.14 1.62 16 10 C -0.09 -3.68 4.56 30.59 0.14 -3.54 16 11 C -0.09 -3.03 3.05 -9.59 -0.03 -3.06 16 12 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 13 C -0.12 -4.16 5.78 31.48 0.18 -3.98 16 14 C 0.05 1.37 6.18 86.45 0.53 1.90 16 15 N -0.52 -13.85 5.27 -881.71 -4.65 -18.50 16 16 C 0.08 1.66 5.05 86.30 0.44 2.10 16 17 C -0.15 -2.90 5.45 -10.79 -0.06 -2.96 16 18 C -0.18 -2.98 10.18 30.60 0.31 -2.67 16 19 C -0.17 -2.47 10.25 30.59 0.31 -2.16 16 20 C 0.05 1.34 6.02 86.56 0.52 1.86 16 21 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 22 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 23 H -0.01 -0.31 7.59 -2.39 -0.02 -0.33 16 24 H 0.05 2.01 8.02 -2.39 -0.02 1.99 16 25 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 26 H 0.06 2.05 7.77 -2.39 -0.02 2.03 16 27 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.05 1.22 7.57 -2.38 -0.02 1.20 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.08 1.63 8.11 -2.38 -0.02 1.62 16 31 H 0.04 0.76 7.55 -2.39 -0.02 0.75 16 32 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.09 1.48 8.03 -2.39 -0.02 1.46 16 34 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.05 1.32 7.94 -2.39 -0.02 1.30 16 Total: -1.00 -63.48 305.37 1.84 -61.64 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.98 Total: 9.56 kcal Atomic # 6 Polarization: -45.19 SS G_CDS: 3.19 Total: -42.00 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -4.36 Total: -76.05 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -63.48 1.84 -61.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260998010.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.265 kcal (2) G-P(sol) polarization free energy of solvation -63.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds