Wall clock time and date at job start Mon Mar 30 2020 02:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99998 * 2 1 4 4 H 1.48501 * 109.47417 * 240.00006 * 3 2 1 5 5 H 1.48496 * 109.47403 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47251 * 120.00130 * 3 2 1 7 7 C 1.37878 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00166 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99823 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46790 * 185.00230 * 9 7 2 11 11 H 1.09005 * 110.32946 * 301.97427 * 10 9 7 12 12 C 1.54899 * 110.38021 * 64.23085 * 10 9 7 13 13 C 1.55140 * 101.65740 * 155.89623 * 12 10 9 14 14 C 1.54310 * 103.01863 * 324.35260 * 13 12 10 15 15 N 1.47443 * 107.23900 * 22.27799 * 14 13 12 16 16 C 1.46901 * 111.00127 * 123.25511 * 15 14 13 17 17 C 1.54269 * 110.02949 * 170.42457 * 16 15 14 18 18 C 1.54969 * 104.15796 * 217.13715 * 17 16 15 19 19 C 1.54888 * 102.77716 * 37.89331 * 18 17 16 20 20 C 1.53874 * 110.03141 * 53.21012 * 16 15 14 21 21 H 0.97000 * 119.99762 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.47394 * 64.99775 * 9 7 2 23 23 H 1.08997 * 109.46889 * 304.99355 * 9 7 2 24 24 H 1.08996 * 110.99334 * 273.99665 * 12 10 9 25 25 H 1.09005 * 110.98839 * 37.80781 * 12 10 9 26 26 H 1.09004 * 110.70241 * 82.73185 * 13 12 10 27 27 H 1.08996 * 110.70759 * 205.96423 * 13 12 10 28 28 H 1.09002 * 109.89088 * 262.87403 * 14 13 12 29 29 H 1.09000 * 110.02823 * 141.76251 * 14 13 12 30 30 H 1.09002 * 110.02193 * 291.81787 * 16 15 14 31 31 H 1.08994 * 110.48640 * 335.78517 * 17 16 15 32 32 H 1.09005 * 110.48359 * 98.43282 * 17 16 15 33 33 H 1.08999 * 110.72083 * 279.57729 * 18 17 16 34 34 H 1.09002 * 110.76270 * 156.22331 * 18 17 16 35 35 H 1.09003 * 110.48751 * 203.40381 * 19 18 17 36 36 H 1.08997 * 110.49169 * 80.75991 * 19 18 17 37 37 H 1.08996 * 110.03426 * 238.56884 * 20 16 15 38 38 H 1.09002 * 110.03412 * 359.94974 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2404 -3.6594 0.1237 11 1 2.9619 -3.6317 -0.6929 12 6 2.9691 -3.6017 1.4893 13 6 3.3865 -5.0831 1.6848 14 6 2.2036 -5.8613 1.0714 15 7 1.5207 -4.9508 0.1340 16 6 1.4610 -5.5311 -1.2142 17 6 0.5416 -4.6809 -2.1152 18 6 -0.1869 -5.7215 -3.0028 19 6 -0.4339 -6.8949 -2.0224 20 6 0.8415 -6.9383 -1.1555 21 1 -0.4850 0.8401 0.0004 22 1 0.6935 -2.5960 -0.9333 23 1 0.5586 -2.5196 0.8399 24 1 3.8436 -2.9531 1.4382 25 1 2.2916 -3.2794 2.2801 26 1 4.3096 -5.2976 1.1463 27 1 3.4937 -5.3167 2.7440 28 1 1.5143 -6.1689 1.8578 29 1 2.5703 -6.7373 0.5365 30 1 2.4617 -5.5813 -1.6435 31 1 -0.1761 -4.1253 -1.5116 32 1 1.1321 -4.0011 -2.7295 33 1 0.4498 -6.0363 -3.8296 34 1 -1.1313 -5.3212 -3.3717 35 1 -0.5553 -7.8299 -2.5694 36 1 -1.3092 -6.6974 -1.4037 37 1 1.5411 -7.6714 -1.5569 38 1 0.5858 -7.1911 -0.1265 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261001640.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:52 Heat of formation + Delta-G solvation = -17.892480 kcal Electronic energy + Delta-G solvation = -16105.315907 eV Core-core repulsion = 13753.426876 eV Total energy + Delta-G solvation = -2351.889031 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.23345 -36.39827 -33.07767 -30.83008 -30.40194 -28.16223 -26.20553 -25.87792 -22.75623 -21.12264 -20.03460 -19.33133 -18.77148 -16.34300 -15.83677 -15.40892 -14.79409 -14.26612 -13.97172 -13.18108 -12.97793 -12.57839 -12.35127 -12.17228 -11.94420 -11.21051 -11.12036 -10.87766 -10.78731 -10.61851 -10.52482 -10.45656 -10.42133 -10.25330 -10.21796 -10.16505 -9.59493 -9.23251 -8.93091 -8.24833 -7.59135 -5.92792 -3.94018 3.36050 3.40791 3.42787 4.44154 4.62541 4.88809 4.98952 5.15771 5.30009 5.39061 5.43051 5.53805 5.71574 5.84298 5.87272 5.94802 6.00053 6.05083 6.08117 6.16631 6.18917 6.23892 6.35598 6.37297 6.44899 6.53543 6.64703 6.75204 6.88601 6.96840 7.18477 7.60944 7.74693 7.85368 8.03481 8.19400 8.52666 9.13070 9.68472 11.18332 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028428 B = 0.008391 C = 0.006864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.720435 B = 3336.114980 C = 4078.341889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.517 4.517 8 H 0.051 0.949 9 C 0.038 3.962 10 C 0.081 3.919 11 H 0.037 0.963 12 C -0.109 4.109 13 C -0.148 4.148 14 C 0.043 3.957 15 N -0.521 5.521 16 C 0.081 3.919 17 C -0.115 4.115 18 C -0.125 4.125 19 C -0.119 4.119 20 C -0.120 4.120 21 H 0.260 0.740 22 H 0.022 0.978 23 H 0.025 0.975 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.032 0.968 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.565 -12.568 -1.625 12.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.556 4.556 8 H 0.069 0.931 9 C 0.001 3.999 10 C -0.026 4.026 11 H 0.055 0.945 12 C -0.147 4.147 13 C -0.186 4.186 14 C -0.085 4.085 15 N -0.245 5.245 16 C -0.028 4.028 17 C -0.153 4.153 18 C -0.163 4.163 19 C -0.156 4.156 20 C -0.158 4.158 21 H 0.069 0.931 22 H 0.040 0.960 23 H 0.043 0.957 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.901 -12.383 -1.465 12.613 hybrid contribution 1.404 0.829 -0.273 1.653 sum 3.305 -11.554 -1.737 12.142 Atomic orbital electron populations 1.69961 1.05922 1.26465 1.50882 1.24962 0.94772 0.98926 0.95574 0.86734 0.79623 0.83565 0.78492 1.20411 1.21358 1.20360 1.21184 0.92804 0.91131 1.50458 0.93068 1.19133 0.93589 0.89228 0.97975 1.22796 0.95218 0.89363 0.95191 0.94527 1.22592 1.00023 0.93594 0.98471 1.22841 0.97748 0.97715 1.00337 1.22750 0.94490 0.95094 0.96142 1.63824 1.51197 1.03356 1.06149 1.22373 0.97054 0.93504 0.89873 1.22544 0.98974 0.96931 0.96861 1.22507 1.00141 0.96139 0.97502 1.22285 0.98009 0.97859 0.97488 1.22284 0.96852 0.96032 1.00589 0.93079 0.95964 0.95689 0.91494 0.90829 0.92515 0.91732 0.91472 0.93648 0.94967 0.89111 0.91913 0.92287 0.91749 0.92517 0.91507 0.92734 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.50 8.59 -34.44 -0.30 -14.80 16 8 H 0.05 1.40 7.69 -52.48 -0.40 1.00 16 9 C 0.04 0.99 4.47 -27.88 -0.12 0.87 16 10 C 0.08 1.73 2.21 -66.19 -0.15 1.58 16 11 H 0.04 0.81 7.67 -51.93 -0.40 0.41 16 12 C -0.11 -2.10 5.93 -24.60 -0.15 -2.25 16 13 C -0.15 -2.31 6.94 -24.91 -0.17 -2.48 16 14 C 0.04 0.68 5.63 -2.84 -0.02 0.67 16 15 N -0.52 -9.73 4.64 -214.15 -0.99 -10.73 16 16 C 0.08 1.36 2.40 -66.59 -0.16 1.20 16 17 C -0.12 -2.01 4.86 -25.03 -0.12 -2.13 16 18 C -0.12 -1.74 6.91 -24.70 -0.17 -1.91 16 19 C -0.12 -1.54 6.83 -25.07 -0.17 -1.71 16 20 C -0.12 -1.66 5.48 -25.61 -0.14 -1.80 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.02 0.60 5.54 -51.93 -0.29 0.32 16 23 H 0.02 0.71 8.13 -51.93 -0.42 0.29 16 24 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 25 H 0.07 1.52 8.05 -51.93 -0.42 1.10 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.65 6.72 -51.93 -0.35 0.30 16 30 H 0.03 0.55 7.93 -51.93 -0.41 0.14 16 31 H 0.09 1.84 6.57 -51.93 -0.34 1.50 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.01 6.80 -51.93 -0.35 0.65 16 LS Contribution 289.33 15.07 4.36 4.36 Total: -1.00 -29.20 289.33 -9.43 -38.63 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -6.75 Total: -1.68 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -1.76 Total: -21.17 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: -0.26 Total: -36.88 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.20 -9.43 -38.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261001640.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.737 kcal (2) G-P(sol) polarization free energy of solvation -29.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds