Wall clock time and date at job start Mon Mar 30 2020 02:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99998 * 2 1 4 4 H 1.48501 * 109.47417 * 240.00006 * 3 2 1 5 5 H 1.48496 * 109.47403 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47251 * 120.00130 * 3 2 1 7 7 C 1.37878 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00166 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99823 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46790 * 185.00230 * 9 7 2 11 11 H 1.09005 * 110.32946 * 301.97427 * 10 9 7 12 12 C 1.54899 * 110.38021 * 64.23085 * 10 9 7 13 13 C 1.55140 * 101.65740 * 155.89623 * 12 10 9 14 14 C 1.54310 * 103.01863 * 324.35260 * 13 12 10 15 15 N 1.47443 * 107.23900 * 22.27799 * 14 13 12 16 16 C 1.46901 * 111.00127 * 123.25511 * 15 14 13 17 17 C 1.54269 * 110.02949 * 170.42457 * 16 15 14 18 18 C 1.54969 * 104.15796 * 217.13715 * 17 16 15 19 19 C 1.54888 * 102.77716 * 37.89331 * 18 17 16 20 20 C 1.53874 * 110.03141 * 53.21012 * 16 15 14 21 21 H 0.97000 * 119.99762 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.47394 * 64.99775 * 9 7 2 23 23 H 1.08997 * 109.46889 * 304.99355 * 9 7 2 24 24 H 1.08996 * 110.99334 * 273.99665 * 12 10 9 25 25 H 1.09005 * 110.98839 * 37.80781 * 12 10 9 26 26 H 1.09004 * 110.70241 * 82.73185 * 13 12 10 27 27 H 1.08996 * 110.70759 * 205.96423 * 13 12 10 28 28 H 1.09002 * 109.89088 * 262.87403 * 14 13 12 29 29 H 1.09000 * 110.02823 * 141.76251 * 14 13 12 30 30 H 1.09002 * 110.02193 * 291.81787 * 16 15 14 31 31 H 1.08994 * 110.48640 * 335.78517 * 17 16 15 32 32 H 1.09005 * 110.48359 * 98.43282 * 17 16 15 33 33 H 1.08999 * 110.72083 * 279.57729 * 18 17 16 34 34 H 1.09002 * 110.76270 * 156.22331 * 18 17 16 35 35 H 1.09003 * 110.48751 * 203.40381 * 19 18 17 36 36 H 1.08997 * 110.49169 * 80.75991 * 19 18 17 37 37 H 1.08996 * 110.03426 * 238.56884 * 20 16 15 38 38 H 1.09002 * 110.03412 * 359.94974 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2404 -3.6594 0.1237 11 1 2.9619 -3.6317 -0.6929 12 6 2.9691 -3.6017 1.4893 13 6 3.3865 -5.0831 1.6848 14 6 2.2036 -5.8613 1.0714 15 7 1.5207 -4.9508 0.1340 16 6 1.4610 -5.5311 -1.2142 17 6 0.5416 -4.6809 -2.1152 18 6 -0.1869 -5.7215 -3.0028 19 6 -0.4339 -6.8949 -2.0224 20 6 0.8415 -6.9383 -1.1555 21 1 -0.4850 0.8401 0.0004 22 1 0.6935 -2.5960 -0.9333 23 1 0.5586 -2.5196 0.8399 24 1 3.8436 -2.9531 1.4382 25 1 2.2916 -3.2794 2.2801 26 1 4.3096 -5.2976 1.1463 27 1 3.4937 -5.3167 2.7440 28 1 1.5143 -6.1689 1.8578 29 1 2.5703 -6.7373 0.5365 30 1 2.4617 -5.5813 -1.6435 31 1 -0.1761 -4.1253 -1.5116 32 1 1.1321 -4.0011 -2.7295 33 1 0.4498 -6.0363 -3.8296 34 1 -1.1313 -5.3212 -3.3717 35 1 -0.5553 -7.8299 -2.5694 36 1 -1.3092 -6.6974 -1.4037 37 1 1.5411 -7.6714 -1.5569 38 1 0.5858 -7.1911 -0.1265 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261001640.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:52 Heat of formation + Delta-G solvation = -35.078632 kcal Electronic energy + Delta-G solvation = -16106.061155 eV Core-core repulsion = 13753.426876 eV Total energy + Delta-G solvation = -2352.634279 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.64597 -37.71602 -35.19026 -32.31422 -32.10526 -29.48395 -27.71787 -27.48970 -24.72041 -22.38395 -21.38002 -20.96651 -20.10214 -18.39158 -17.34420 -16.82139 -16.44960 -15.92093 -15.25438 -14.69263 -14.41816 -14.17215 -14.00095 -13.66871 -13.48016 -13.06568 -12.84923 -12.59752 -12.31312 -12.12200 -11.87230 -11.82918 -11.80594 -11.73516 -11.51696 -11.38828 -11.33450 -11.09767 -10.97155 -10.45705 -9.06179 -8.15211 -6.24865 1.39011 1.41907 1.49589 2.41524 3.15430 3.18051 3.66534 3.78838 3.85382 4.03752 4.12571 4.23697 4.43906 4.49832 4.62958 4.64265 4.71419 4.74806 4.82462 4.88195 4.97972 5.02114 5.08534 5.10172 5.15767 5.23136 5.33133 5.33212 5.40293 5.43532 5.53043 5.56336 5.80144 5.86465 6.19924 6.37943 6.50366 6.92067 7.42629 8.96478 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028428 B = 0.008391 C = 0.006864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.720435 B = 3336.114980 C = 4078.341889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.533 4.533 8 H 0.056 0.944 9 C 0.050 3.950 10 C 0.089 3.911 11 H 0.028 0.972 12 C -0.111 4.111 13 C -0.134 4.134 14 C 0.042 3.958 15 N -0.539 5.539 16 C 0.078 3.922 17 C -0.119 4.119 18 C -0.118 4.118 19 C -0.114 4.114 20 C -0.112 4.112 21 H 0.261 0.739 22 H -0.002 1.002 23 H -0.015 1.015 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.050 0.950 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.052 -14.264 -1.728 14.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.572 4.572 8 H 0.074 0.926 9 C 0.012 3.988 10 C -0.018 4.018 11 H 0.046 0.954 12 C -0.149 4.149 13 C -0.172 4.172 14 C -0.085 4.085 15 N -0.264 5.264 16 C -0.031 4.031 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.152 4.152 20 C -0.150 4.150 21 H 0.070 0.930 22 H 0.017 0.983 23 H 0.004 0.996 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.398 -14.100 -1.564 14.588 hybrid contribution 0.891 1.364 -0.258 1.650 sum 4.289 -12.736 -1.822 13.561 Atomic orbital electron populations 1.70114 1.07727 1.27502 1.51874 1.25900 0.95663 1.03006 0.95043 0.85590 0.78333 0.78571 0.79079 1.19371 1.20933 1.19195 1.21572 0.93199 0.92268 1.50121 0.92580 1.18920 0.93656 0.91223 0.94972 1.22448 0.93834 0.89412 0.96142 0.95412 1.22520 0.99193 0.96773 0.96444 1.22789 0.98126 0.94062 1.02210 1.22848 0.94617 0.95191 0.95856 1.63678 1.51642 1.03115 1.07956 1.22477 0.97021 0.95029 0.88563 1.22470 0.98461 0.97600 0.97168 1.22488 1.00064 0.95374 0.97657 1.22282 0.97257 0.98546 0.97099 1.22258 0.97509 0.94154 1.01083 0.92995 0.98328 0.99615 0.91782 0.92903 0.90924 0.89306 0.90818 0.91124 0.94902 0.93135 0.94044 0.90365 0.91585 0.89453 0.92407 0.90138 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.96 45.21 29.54 68.60 2.03 47.24 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.53 -30.94 8.59 25.60 0.22 -30.72 16 8 H 0.06 3.12 7.69 -2.91 -0.02 3.10 16 9 C 0.05 2.74 4.47 29.85 0.13 2.88 16 10 C 0.09 3.91 2.21 45.38 0.10 4.01 16 11 H 0.03 1.25 7.67 -2.38 -0.02 1.24 16 12 C -0.11 -4.30 5.93 31.98 0.19 -4.11 16 13 C -0.13 -3.83 6.94 31.77 0.22 -3.61 16 14 C 0.04 1.24 5.63 86.64 0.49 1.72 16 15 N -0.54 -20.16 4.64 -831.43 -3.85 -24.01 16 16 C 0.08 2.55 2.40 45.64 0.11 2.66 16 17 C -0.12 -4.31 4.86 31.70 0.15 -4.15 16 18 C -0.12 -3.17 6.91 31.91 0.22 -2.95 16 19 C -0.11 -2.68 6.83 31.67 0.22 -2.46 16 20 C -0.11 -2.79 5.48 31.32 0.17 -2.62 16 21 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 22 H 0.00 -0.09 5.54 -2.39 -0.01 -0.10 16 23 H -0.01 -0.91 8.13 -2.39 -0.02 -0.93 16 24 H 0.06 2.47 8.13 -2.39 -0.02 2.45 16 25 H 0.05 2.23 8.05 -2.38 -0.02 2.21 16 26 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.07 1.74 6.72 -2.39 -0.02 1.72 16 30 H 0.03 1.08 7.93 -2.39 -0.02 1.06 16 31 H 0.05 2.21 6.57 -2.39 -0.02 2.20 16 32 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.07 1.82 6.80 -2.39 -0.02 1.80 16 Total: -1.00 -65.73 289.33 2.14 -63.59 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.00 Total: 9.90 kcal Atomic # 6 Polarization: -41.49 SS G_CDS: 2.69 Total: -38.80 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -3.57 Total: -81.92 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -65.73 2.14 -63.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261001640.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.512 kcal (2) G-P(sol) polarization free energy of solvation -65.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds