Wall clock time and date at job start Mon Mar 30 2020 03:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99779 * 2 1 4 4 H 1.48499 * 109.47071 * 269.99798 * 3 2 1 5 5 H 1.48502 * 109.47441 * 29.99836 * 3 2 1 6 6 H 1.48503 * 109.46890 * 149.99996 * 3 2 1 7 7 C 1.37871 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00072 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00241 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.44670 * 299.96656 * 9 7 2 11 11 C 1.53029 * 109.46472 * 59.94135 * 9 7 2 12 12 C 1.53118 * 109.27926 * 179.19788 * 11 9 7 13 13 C 1.53120 * 109.16118 * 302.34398 * 12 11 9 14 14 C 1.53034 * 109.27741 * 57.65639 * 13 12 11 15 15 N 1.46851 * 109.46328 * 179.97438 * 9 7 2 16 16 C 1.46902 * 110.99808 * 54.14343 * 15 9 7 17 17 C 1.53006 * 109.46626 * 190.25638 * 16 15 9 18 18 C 1.53777 * 113.61386 * 274.13193 * 17 16 15 19 19 C 1.53950 * 87.02290 * 220.05104 * 18 17 16 20 20 C 1.53780 * 113.61053 * 176.52548 * 17 16 15 21 21 H 0.96998 * 119.99799 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.50577 * 59.25391 * 11 9 7 23 23 H 1.09005 * 109.50293 * 299.13926 * 11 9 7 24 24 H 1.09009 * 109.52319 * 182.43845 * 12 11 9 25 25 H 1.09000 * 109.52591 * 62.25107 * 12 11 9 26 26 H 1.08995 * 109.50139 * 297.71351 * 13 12 11 27 27 H 1.08997 * 109.53534 * 177.61582 * 13 12 11 28 28 H 1.08995 * 109.46548 * 180.80811 * 14 13 12 29 29 H 1.09002 * 109.45815 * 60.82724 * 14 13 12 30 30 H 1.08993 * 109.47737 * 70.25770 * 16 15 9 31 31 H 1.09000 * 109.47263 * 310.25332 * 16 15 9 32 32 H 1.08998 * 112.84948 * 45.33067 * 17 16 15 33 33 H 1.08999 * 113.61825 * 334.57628 * 18 17 16 34 34 H 1.09009 * 113.61337 * 105.47075 * 18 17 16 35 35 H 1.08997 * 113.53871 * 270.81642 * 19 18 17 36 36 H 1.08996 * 113.67048 * 139.93263 * 19 18 17 37 37 H 1.08992 * 113.61837 * 254.52753 * 20 17 16 38 38 H 1.09001 * 113.61732 * 25.35502 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6247 -2.5565 0.8907 11 6 0.3707 -2.5797 -1.2486 12 6 -0.3774 -3.9156 -1.2545 13 6 0.6381 -5.0606 -1.2047 14 6 1.5107 -4.9081 0.0432 15 7 2.2056 -3.6151 0.0005 16 6 3.1582 -3.4930 1.1121 17 6 4.2821 -4.5162 0.9352 18 6 3.9512 -5.9012 1.5157 19 6 5.4075 -5.9521 2.0124 20 6 5.3817 -4.4145 2.0054 21 1 -0.4850 0.8400 -0.0004 22 1 0.9952 -2.5084 -2.1392 23 1 -0.3479 -1.7602 -1.2408 24 1 -0.9726 -3.9959 -2.1642 25 1 -1.0314 -3.9708 -0.3842 26 1 1.2667 -5.0283 -2.0946 27 1 0.1110 -6.0138 -1.1659 28 1 2.2442 -5.7137 0.0741 29 1 0.8829 -4.9542 0.9331 30 1 2.6430 -3.6787 2.0544 31 1 3.5799 -2.4879 1.1205 32 1 4.6666 -4.5505 -0.0841 33 1 3.2162 -5.8733 2.3201 34 1 3.7213 -6.6492 0.7568 35 1 6.0998 -6.3804 1.2876 36 1 5.5155 -6.3825 3.0079 37 1 6.3050 -3.9640 1.6414 38 1 5.0389 -3.9781 2.9436 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261011923.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:22 Heat of formation + Delta-G solvation = 8.722965 kcal Electronic energy + Delta-G solvation = -16212.705870 eV Core-core repulsion = 13861.970971 eV Total energy + Delta-G solvation = -2350.734899 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.03049 -37.25120 -32.87302 -32.45282 -29.44070 -27.32135 -25.37620 -25.09898 -23.23988 -21.22894 -20.61274 -19.13218 -18.40514 -16.50426 -15.41981 -15.02548 -14.46898 -14.09012 -13.75223 -13.21840 -12.98484 -12.49016 -12.26130 -12.24824 -12.14845 -11.47973 -11.36506 -10.92837 -10.78560 -10.65994 -10.50893 -10.20638 -10.16420 -10.05804 -9.95879 -9.64452 -9.50070 -8.97715 -8.67556 -8.34148 -7.05700 -5.98031 -4.02335 3.32160 3.38561 3.41601 4.43037 4.84202 4.95911 5.03555 5.13012 5.29547 5.38781 5.73640 5.77913 5.81271 5.93284 6.00451 6.03333 6.08083 6.13031 6.20517 6.31166 6.40477 6.45703 6.53916 6.61350 6.65103 6.77386 6.91140 6.94015 6.98277 7.19879 7.36576 7.65263 7.81006 7.87764 8.29485 8.41670 8.69995 9.05259 9.62356 11.08299 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023407 B = 0.010046 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.921939 B = 2786.616260 C = 3827.836716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.504 4.504 8 H 0.064 0.936 9 C 0.219 3.781 10 H -0.004 1.004 11 C -0.104 4.104 12 C -0.122 4.122 13 C -0.112 4.112 14 C 0.053 3.947 15 N -0.532 5.532 16 C 0.072 3.928 17 C -0.101 4.101 18 C -0.139 4.139 19 C -0.143 4.143 20 C -0.137 4.137 21 H 0.260 0.740 22 H 0.042 0.958 23 H 0.092 0.908 24 H 0.042 0.958 25 H 0.046 0.954 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.014 0.986 30 H 0.016 0.984 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.339 -9.462 1.661 10.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.543 4.543 8 H 0.082 0.918 9 C 0.113 3.887 10 H 0.013 0.987 11 C -0.143 4.143 12 C -0.160 4.160 13 C -0.150 4.150 14 C -0.076 4.076 15 N -0.257 5.257 16 C -0.057 4.057 17 C -0.120 4.120 18 C -0.176 4.176 19 C -0.181 4.181 20 C -0.175 4.175 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.110 0.890 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.032 0.968 30 H 0.034 0.966 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.433 -9.300 1.229 10.840 hybrid contribution -0.141 0.855 0.746 1.143 sum 5.292 -8.444 1.975 10.159 Atomic orbital electron populations 1.69894 1.05869 1.26401 1.51034 1.24936 0.94866 0.99079 0.95326 0.86556 0.79751 0.83357 0.78088 1.20696 1.21389 1.19943 1.21213 0.93258 0.89869 1.49929 0.91816 1.19179 0.89000 0.87344 0.93227 0.98665 1.21630 0.99010 0.94913 0.98727 1.21685 0.97404 0.97278 0.99647 1.21549 0.97514 0.97320 0.98597 1.22129 0.95865 0.93599 0.95983 1.62012 1.18851 1.01912 1.42920 1.21987 0.92578 0.99610 0.91482 1.22591 0.96036 0.94726 0.98638 1.23097 0.96095 0.98222 1.00201 1.22845 0.97610 0.96941 1.00677 1.22902 0.99126 0.95717 0.99787 0.93041 0.93932 0.88965 0.93885 0.93534 0.92015 0.93543 0.91664 0.96762 0.96555 0.89298 0.88983 0.90687 0.91862 0.90679 0.92190 0.91891 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 11.33 55.43 0.63 -24.88 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.50 -13.81 7.80 -34.44 -0.27 -14.08 16 8 H 0.06 1.74 6.31 -52.48 -0.33 1.41 16 9 C 0.22 5.57 1.83 -68.88 -0.13 5.45 16 10 H 0.00 -0.12 8.14 -51.93 -0.42 -0.54 16 11 C -0.10 -2.55 5.14 -26.66 -0.14 -2.68 16 12 C -0.12 -2.49 6.00 -26.61 -0.16 -2.65 16 13 C -0.11 -2.03 6.09 -26.65 -0.16 -2.19 16 14 C 0.05 1.00 5.04 -3.83 -0.02 0.98 16 15 N -0.53 -11.62 4.48 -228.08 -1.02 -12.64 16 16 C 0.07 1.43 4.64 -3.82 -0.02 1.41 16 17 C -0.10 -1.61 3.50 -89.81 -0.31 -1.93 16 18 C -0.14 -1.92 5.80 -25.83 -0.15 -2.07 16 19 C -0.14 -1.73 8.09 -25.83 -0.21 -1.94 16 20 C -0.14 -1.88 7.65 -25.92 -0.20 -2.08 16 21 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 22 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 23 H 0.09 2.49 6.09 -51.93 -0.32 2.17 16 24 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.10 4.85 -51.93 -0.25 0.85 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.02 0.33 7.85 -51.93 -0.41 -0.08 16 31 H 0.09 1.95 5.80 -51.93 -0.30 1.65 16 32 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.07 1.06 7.92 -51.93 -0.41 0.65 16 34 H 0.06 0.84 7.21 -51.92 -0.37 0.46 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 285.56 15.07 4.30 4.30 Total: -1.00 -27.82 285.56 -9.57 -37.39 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.60 Total: -0.28 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -1.86 Total: -20.24 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.39 Total: -37.52 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.82 -9.57 -37.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011923.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.110 kcal (2) G-P(sol) polarization free energy of solvation -27.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds