Wall clock time and date at job start Mon Mar 30 2020 03:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99779 * 2 1 4 4 H 1.48499 * 109.47071 * 269.99798 * 3 2 1 5 5 H 1.48502 * 109.47441 * 29.99836 * 3 2 1 6 6 H 1.48503 * 109.46890 * 149.99996 * 3 2 1 7 7 C 1.37871 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00072 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00241 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.44670 * 299.96656 * 9 7 2 11 11 C 1.53029 * 109.46472 * 59.94135 * 9 7 2 12 12 C 1.53118 * 109.27926 * 179.19788 * 11 9 7 13 13 C 1.53120 * 109.16118 * 302.34398 * 12 11 9 14 14 C 1.53034 * 109.27741 * 57.65639 * 13 12 11 15 15 N 1.46851 * 109.46328 * 179.97438 * 9 7 2 16 16 C 1.46902 * 110.99808 * 54.14343 * 15 9 7 17 17 C 1.53006 * 109.46626 * 190.25638 * 16 15 9 18 18 C 1.53777 * 113.61386 * 274.13193 * 17 16 15 19 19 C 1.53950 * 87.02290 * 220.05104 * 18 17 16 20 20 C 1.53780 * 113.61053 * 176.52548 * 17 16 15 21 21 H 0.96998 * 119.99799 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.50577 * 59.25391 * 11 9 7 23 23 H 1.09005 * 109.50293 * 299.13926 * 11 9 7 24 24 H 1.09009 * 109.52319 * 182.43845 * 12 11 9 25 25 H 1.09000 * 109.52591 * 62.25107 * 12 11 9 26 26 H 1.08995 * 109.50139 * 297.71351 * 13 12 11 27 27 H 1.08997 * 109.53534 * 177.61582 * 13 12 11 28 28 H 1.08995 * 109.46548 * 180.80811 * 14 13 12 29 29 H 1.09002 * 109.45815 * 60.82724 * 14 13 12 30 30 H 1.08993 * 109.47737 * 70.25770 * 16 15 9 31 31 H 1.09000 * 109.47263 * 310.25332 * 16 15 9 32 32 H 1.08998 * 112.84948 * 45.33067 * 17 16 15 33 33 H 1.08999 * 113.61825 * 334.57628 * 18 17 16 34 34 H 1.09009 * 113.61337 * 105.47075 * 18 17 16 35 35 H 1.08997 * 113.53871 * 270.81642 * 19 18 17 36 36 H 1.08996 * 113.67048 * 139.93263 * 19 18 17 37 37 H 1.08992 * 113.61837 * 254.52753 * 20 17 16 38 38 H 1.09001 * 113.61732 * 25.35502 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6247 -2.5565 0.8907 11 6 0.3707 -2.5797 -1.2486 12 6 -0.3774 -3.9156 -1.2545 13 6 0.6381 -5.0606 -1.2047 14 6 1.5107 -4.9081 0.0432 15 7 2.2056 -3.6151 0.0005 16 6 3.1582 -3.4930 1.1121 17 6 4.2821 -4.5162 0.9352 18 6 3.9512 -5.9012 1.5157 19 6 5.4075 -5.9521 2.0124 20 6 5.3817 -4.4145 2.0054 21 1 -0.4850 0.8400 -0.0004 22 1 0.9952 -2.5084 -2.1392 23 1 -0.3479 -1.7602 -1.2408 24 1 -0.9726 -3.9959 -2.1642 25 1 -1.0314 -3.9708 -0.3842 26 1 1.2667 -5.0283 -2.0946 27 1 0.1110 -6.0138 -1.1659 28 1 2.2442 -5.7137 0.0741 29 1 0.8829 -4.9542 0.9331 30 1 2.6430 -3.6787 2.0544 31 1 3.5799 -2.4879 1.1205 32 1 4.6666 -4.5505 -0.0841 33 1 3.2162 -5.8733 2.3201 34 1 3.7213 -6.6492 0.7568 35 1 6.0998 -6.3804 1.2876 36 1 5.5155 -6.3825 3.0079 37 1 6.3050 -3.9640 1.6414 38 1 5.0389 -3.9781 2.9436 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261011923.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:22 Heat of formation + Delta-G solvation = -6.928206 kcal Electronic energy + Delta-G solvation = -16213.384555 eV Core-core repulsion = 13861.970971 eV Total energy + Delta-G solvation = -2351.413585 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.45436 -38.75455 -34.90543 -34.09879 -31.32793 -28.80443 -27.12005 -26.48090 -24.71585 -23.01600 -22.18208 -20.55227 -19.93043 -18.50912 -17.07086 -16.64217 -15.83367 -15.75676 -15.37417 -14.95145 -14.56698 -14.28481 -13.89266 -13.77272 -13.26819 -13.13498 -12.87043 -12.65959 -12.57956 -12.34732 -12.14492 -11.93362 -11.81343 -11.49196 -11.36078 -11.29140 -10.95132 -10.72307 -10.50416 -10.38103 -8.87183 -8.10742 -6.22715 1.40037 1.40837 1.50974 2.41204 3.15203 3.36912 3.82252 3.87575 3.98014 4.09134 4.19643 4.22524 4.36827 4.57089 4.64200 4.76901 4.82254 4.87639 4.92092 4.92666 5.00587 5.08045 5.09597 5.13120 5.20438 5.24121 5.26498 5.35368 5.43786 5.51803 5.64134 5.71736 5.77370 5.84359 6.30346 6.48410 6.83819 6.94400 7.46150 8.94528 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023407 B = 0.010046 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.921939 B = 2786.616260 C = 3827.836716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.010 3.990 3 Si 0.958 3.042 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.224 3.776 10 H -0.048 1.048 11 C -0.099 4.099 12 C -0.118 4.118 13 C -0.107 4.107 14 C 0.051 3.949 15 N -0.537 5.537 16 C 0.075 3.925 17 C -0.105 4.105 18 C -0.136 4.136 19 C -0.126 4.126 20 C -0.137 4.137 21 H 0.261 0.739 22 H 0.032 0.968 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.038 0.962 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.004 0.996 30 H 0.005 0.995 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.665 -11.127 1.405 13.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.784 3.216 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.559 4.559 8 H 0.077 0.923 9 C 0.117 3.883 10 H -0.031 1.031 11 C -0.138 4.138 12 C -0.156 4.156 13 C -0.144 4.144 14 C -0.077 4.077 15 N -0.262 5.262 16 C -0.053 4.053 17 C -0.124 4.124 18 C -0.173 4.173 19 C -0.164 4.164 20 C -0.175 4.175 21 H 0.070 0.930 22 H 0.050 0.950 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.022 0.978 30 H 0.023 0.977 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.771 -10.983 0.975 12.939 hybrid contribution -0.572 1.377 0.848 1.715 sum 6.200 -9.606 1.823 11.577 Atomic orbital electron populations 1.70035 1.07183 1.27152 1.51609 1.25727 0.95705 1.02417 0.94983 0.85555 0.78636 0.79193 0.78260 1.20087 1.20935 1.19287 1.21496 0.93200 0.91243 1.49957 0.92347 1.18969 0.89135 0.88405 0.91803 1.03074 1.21448 0.98298 0.96530 0.97537 1.21617 0.97748 0.95825 1.00369 1.21550 0.96918 0.97903 0.98048 1.22273 0.96518 0.92700 0.96199 1.62024 1.18316 1.02154 1.43693 1.21968 0.93290 0.99606 0.90453 1.22566 0.95401 0.95054 0.99366 1.23063 0.97482 0.96576 1.00192 1.22783 0.96314 0.95252 1.02004 1.22920 0.98408 0.97596 0.98623 0.93022 0.94954 0.92106 0.91700 0.94351 0.91621 0.89799 0.88812 0.97805 0.97727 0.92242 0.89376 0.91235 0.90699 0.89067 0.90549 0.91094 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.34 11.33 21.45 0.24 -54.09 16 2 C 0.01 0.58 5.30 84.65 0.45 1.02 16 3 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.52 -29.55 7.80 25.60 0.20 -29.35 16 8 H 0.06 3.30 6.31 -2.91 -0.02 3.28 16 9 C 0.22 11.86 1.83 44.19 0.08 11.94 16 10 H -0.05 -2.91 8.14 -2.39 -0.02 -2.93 16 11 C -0.10 -4.99 5.14 30.64 0.16 -4.83 16 12 C -0.12 -4.72 6.00 30.67 0.18 -4.53 16 13 C -0.11 -3.62 6.09 30.65 0.19 -3.43 16 14 C 0.05 1.87 5.04 86.32 0.44 2.31 16 15 N -0.54 -23.74 4.48 -875.50 -3.93 -27.67 16 16 C 0.07 3.04 4.64 86.31 0.40 3.45 16 17 C -0.11 -3.23 3.50 -10.27 -0.04 -3.26 16 18 C -0.14 -3.39 5.80 31.18 0.18 -3.21 16 19 C -0.13 -2.62 8.09 31.18 0.25 -2.37 16 20 C -0.14 -3.51 7.65 31.12 0.24 -3.27 16 21 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 22 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 23 H 0.06 3.41 6.09 -2.38 -0.01 3.40 16 24 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 25 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.09 2.92 4.85 -2.39 -0.01 2.90 16 29 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.00 0.19 7.85 -2.39 -0.02 0.17 16 31 H 0.06 2.72 5.80 -2.39 -0.01 2.71 16 32 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.07 1.83 7.92 -2.39 -0.02 1.81 16 34 H 0.07 1.71 7.21 -2.38 -0.02 1.69 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 1.93 8.10 -2.39 -0.02 1.91 16 Total: -1.00 -61.92 285.56 2.08 -59.84 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 1.00 Total: 10.77 kcal Atomic # 6 Polarization: -38.26 SS G_CDS: 2.73 Total: -35.53 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -3.68 Total: -81.76 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -61.92 2.08 -59.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011923.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.911 kcal (2) G-P(sol) polarization free energy of solvation -61.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds