Wall clock time and date at job start Mon Mar 30 2020 03:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99946 * 2 1 4 4 H 1.48497 * 109.46489 * 269.99415 * 3 2 1 5 5 H 1.48500 * 109.46931 * 29.98923 * 3 2 1 6 6 H 1.48494 * 109.47177 * 149.99416 * 3 2 1 7 7 C 1.37873 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00138 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00285 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46217 * 59.99448 * 9 7 2 11 11 C 1.53035 * 109.45133 * 300.02777 * 9 7 2 12 12 C 1.53121 * 109.27937 * 180.80852 * 11 9 7 13 13 C 1.53120 * 109.16072 * 57.65183 * 12 11 9 14 14 C 1.53044 * 109.27713 * 302.34905 * 13 12 11 15 15 N 1.46842 * 109.46307 * 179.97438 * 9 7 2 16 16 C 1.46896 * 111.00281 * 305.84525 * 15 9 7 17 17 C 1.52999 * 109.47012 * 295.18331 * 16 15 9 18 18 C 1.53787 * 113.61507 * 271.70580 * 17 16 15 19 19 C 1.53957 * 87.02029 * 220.05010 * 18 17 16 20 20 C 1.53781 * 87.11261 * 25.35948 * 19 18 17 21 21 H 0.96999 * 120.00375 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.50263 * 300.74696 * 11 9 7 23 23 H 1.08994 * 109.50655 * 60.86518 * 11 9 7 24 24 H 1.09004 * 109.52281 * 297.75063 * 12 11 9 25 25 H 1.08998 * 109.58052 * 177.58613 * 12 11 9 26 26 H 1.09000 * 109.50307 * 182.41072 * 13 12 11 27 27 H 1.09001 * 109.54117 * 62.30584 * 13 12 11 28 28 H 1.09000 * 109.46306 * 299.16140 * 14 13 12 29 29 H 1.09007 * 109.46366 * 179.19394 * 14 13 12 30 30 H 1.09001 * 109.47223 * 55.17853 * 16 15 9 31 31 H 1.08996 * 109.47107 * 175.18387 * 16 15 9 32 32 H 1.09000 * 112.85063 * 42.89845 * 17 16 15 33 33 H 1.09001 * 113.60824 * 334.56323 * 18 17 16 34 34 H 1.08994 * 113.61589 * 105.46876 * 18 17 16 35 35 H 1.08998 * 113.53166 * 270.81030 * 19 18 17 36 36 H 1.09001 * 113.74544 * 139.94143 * 19 18 17 37 37 H 1.08997 * 113.61397 * 220.09459 * 20 19 18 38 38 H 1.09001 * 113.61689 * 89.18906 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4464 2.6527 0.6998 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5570 -0.8897 11 6 0.3704 -2.5792 1.2495 12 6 -0.3778 -3.9152 1.2558 13 6 0.6377 -5.0602 1.2067 14 6 1.5106 -4.9081 -0.0412 15 7 2.2055 -3.6151 0.0005 16 6 3.1580 -3.4933 -1.1111 17 6 2.4100 -3.6195 -2.4398 18 6 2.2736 -5.0692 -2.9346 19 6 2.5536 -4.5280 -4.3485 20 6 3.2943 -3.3628 -3.6715 21 1 -0.4850 0.8400 -0.0004 22 1 0.9947 -2.5076 2.1402 23 1 -0.3482 -1.7598 1.2413 24 1 -1.0316 -3.9706 0.3854 25 1 -0.9738 -3.9958 2.1648 26 1 0.1100 -6.0131 1.1677 27 1 1.2663 -5.0284 2.0966 28 1 0.8831 -4.9546 -0.9312 29 1 2.2442 -5.7138 -0.0716 30 1 3.6508 -2.5222 -1.0625 31 1 3.9048 -4.2839 -1.0380 32 1 1.4723 -3.0640 -2.4521 33 1 3.0520 -5.7336 -2.5595 34 1 1.2711 -5.4794 -2.8137 35 1 1.6544 -4.2219 -4.8832 36 1 3.2021 -5.1705 -4.9440 37 1 3.1144 -2.3974 -4.1444 38 1 4.3522 -3.5597 -3.4981 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261011924.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:24 Heat of formation + Delta-G solvation = 9.723069 kcal Electronic energy + Delta-G solvation = -16480.443511 eV Core-core repulsion = 14129.751980 eV Total energy + Delta-G solvation = -2350.691531 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.17646 -37.03430 -32.86834 -32.46562 -29.41829 -27.03453 -25.28241 -25.06085 -23.27337 -21.50454 -20.64299 -19.08798 -18.24269 -16.29146 -15.40568 -15.03285 -14.30297 -14.15172 -13.73889 -13.29386 -12.89701 -12.57149 -12.19696 -12.13387 -11.89340 -11.62764 -11.20591 -10.94843 -10.69548 -10.59479 -10.38419 -10.32901 -10.12705 -10.02424 -9.81356 -9.67326 -9.41877 -9.15943 -8.62747 -8.33739 -6.96856 -5.97102 -4.00778 3.31967 3.38922 3.42898 4.44112 4.97636 5.08584 5.14170 5.21360 5.34402 5.42691 5.71761 5.78386 5.91442 5.94052 6.05415 6.09627 6.15259 6.22176 6.32474 6.35923 6.41786 6.47613 6.50535 6.64867 6.74519 6.80388 6.90403 6.94564 7.04576 7.26872 7.36928 7.66077 7.81357 7.89141 8.30276 8.42264 8.70820 9.06409 9.63767 11.09225 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.020891 B = 0.012037 C = 0.008510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.956440 B = 2325.533714 C = 3289.567932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.501 4.501 8 H 0.062 0.938 9 C 0.219 3.781 10 H 0.001 0.999 11 C -0.106 4.106 12 C -0.122 4.122 13 C -0.113 4.113 14 C 0.058 3.942 15 N -0.533 5.533 16 C 0.075 3.925 17 C -0.136 4.136 18 C -0.137 4.137 19 C -0.143 4.143 20 C -0.134 4.134 21 H 0.259 0.741 22 H 0.041 0.959 23 H 0.092 0.908 24 H 0.046 0.954 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.026 0.974 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.746 -8.207 -3.669 9.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.539 4.539 8 H 0.080 0.920 9 C 0.113 3.887 10 H 0.019 0.981 11 C -0.145 4.145 12 C -0.160 4.160 13 C -0.151 4.151 14 C -0.071 4.071 15 N -0.257 5.257 16 C -0.053 4.053 17 C -0.155 4.155 18 C -0.174 4.174 19 C -0.181 4.181 20 C -0.172 4.172 21 H 0.069 0.931 22 H 0.060 0.940 23 H 0.110 0.890 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.852 -8.052 -3.201 9.122 hybrid contribution -0.123 0.869 -0.791 1.181 sum 2.729 -7.183 -3.991 8.659 Atomic orbital electron populations 1.69886 1.05831 1.26342 1.51209 1.24909 0.94828 0.98978 0.95405 0.86590 0.79913 0.83531 0.77951 1.20875 1.21347 1.19888 1.21190 0.93202 0.89847 1.49674 0.91964 1.19184 0.89082 0.87267 0.93183 0.98125 1.21652 0.99071 0.94894 0.98857 1.21676 0.97374 0.97270 0.99639 1.21568 0.97549 0.97343 0.98642 1.22010 0.95805 0.92903 0.96363 1.62186 1.19394 1.02033 1.42058 1.22054 0.94603 1.01705 0.86950 1.23157 1.00848 0.95581 0.95964 1.23081 1.00950 0.97278 0.96114 1.22842 1.00272 0.98485 0.96482 1.22827 0.98766 0.98099 0.97485 0.93092 0.93999 0.88962 0.93544 0.93918 0.93542 0.92075 0.95590 0.92977 0.89660 0.93308 0.88552 0.90777 0.92226 0.90800 0.92361 0.91902 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 11.33 55.43 0.63 -24.63 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.50 -13.50 7.87 -34.44 -0.27 -13.77 16 8 H 0.06 1.69 6.27 -52.49 -0.33 1.36 16 9 C 0.22 5.43 1.46 -68.88 -0.10 5.33 16 10 H 0.00 0.03 6.47 -51.93 -0.34 -0.30 16 11 C -0.11 -2.57 5.14 -26.65 -0.14 -2.71 16 12 C -0.12 -2.45 6.00 -26.61 -0.16 -2.61 16 13 C -0.11 -2.04 6.09 -26.65 -0.16 -2.20 16 14 C 0.06 1.08 4.40 -3.83 -0.02 1.06 16 15 N -0.53 -11.50 4.69 -228.08 -1.07 -12.57 16 16 C 0.08 1.47 4.98 -3.83 -0.02 1.45 16 17 C -0.14 -2.44 2.93 -89.80 -0.26 -2.70 16 18 C -0.14 -2.06 6.11 -25.82 -0.16 -2.22 16 19 C -0.14 -1.98 8.09 -25.83 -0.21 -2.19 16 20 C -0.13 -2.06 7.65 -25.92 -0.20 -2.26 16 21 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 22 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.09 2.47 6.09 -51.93 -0.32 2.15 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.03 0.50 5.81 -51.93 -0.30 0.19 16 29 H 0.05 0.88 8.12 -51.93 -0.42 0.46 16 30 H 0.09 1.83 5.96 -51.93 -0.31 1.52 16 31 H 0.05 0.86 7.83 -51.93 -0.41 0.45 16 32 H 0.10 2.06 6.29 -51.93 -0.33 1.74 16 33 H 0.07 1.05 7.89 -51.93 -0.41 0.64 16 34 H 0.06 0.91 7.25 -51.93 -0.38 0.53 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 282.40 15.07 4.26 4.26 Total: -1.00 -27.33 282.40 -9.47 -36.80 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.47 Total: 1.16 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -1.79 Total: -21.28 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: -0.44 Total: -37.20 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.33 -9.47 -36.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011924.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.522 kcal (2) G-P(sol) polarization free energy of solvation -27.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds