Wall clock time and date at job start Mon Mar 30 2020 03:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99946 * 2 1 4 4 H 1.48497 * 109.46489 * 269.99415 * 3 2 1 5 5 H 1.48500 * 109.46931 * 29.98923 * 3 2 1 6 6 H 1.48494 * 109.47177 * 149.99416 * 3 2 1 7 7 C 1.37873 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00138 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00285 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46217 * 59.99448 * 9 7 2 11 11 C 1.53035 * 109.45133 * 300.02777 * 9 7 2 12 12 C 1.53121 * 109.27937 * 180.80852 * 11 9 7 13 13 C 1.53120 * 109.16072 * 57.65183 * 12 11 9 14 14 C 1.53044 * 109.27713 * 302.34905 * 13 12 11 15 15 N 1.46842 * 109.46307 * 179.97438 * 9 7 2 16 16 C 1.46896 * 111.00281 * 305.84525 * 15 9 7 17 17 C 1.52999 * 109.47012 * 295.18331 * 16 15 9 18 18 C 1.53787 * 113.61507 * 271.70580 * 17 16 15 19 19 C 1.53957 * 87.02029 * 220.05010 * 18 17 16 20 20 C 1.53781 * 87.11261 * 25.35948 * 19 18 17 21 21 H 0.96999 * 120.00375 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.50263 * 300.74696 * 11 9 7 23 23 H 1.08994 * 109.50655 * 60.86518 * 11 9 7 24 24 H 1.09004 * 109.52281 * 297.75063 * 12 11 9 25 25 H 1.08998 * 109.58052 * 177.58613 * 12 11 9 26 26 H 1.09000 * 109.50307 * 182.41072 * 13 12 11 27 27 H 1.09001 * 109.54117 * 62.30584 * 13 12 11 28 28 H 1.09000 * 109.46306 * 299.16140 * 14 13 12 29 29 H 1.09007 * 109.46366 * 179.19394 * 14 13 12 30 30 H 1.09001 * 109.47223 * 55.17853 * 16 15 9 31 31 H 1.08996 * 109.47107 * 175.18387 * 16 15 9 32 32 H 1.09000 * 112.85063 * 42.89845 * 17 16 15 33 33 H 1.09001 * 113.60824 * 334.56323 * 18 17 16 34 34 H 1.08994 * 113.61589 * 105.46876 * 18 17 16 35 35 H 1.08998 * 113.53166 * 270.81030 * 19 18 17 36 36 H 1.09001 * 113.74544 * 139.94143 * 19 18 17 37 37 H 1.08997 * 113.61397 * 220.09459 * 20 19 18 38 38 H 1.09001 * 113.61689 * 89.18906 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4464 2.6527 0.6998 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5570 -0.8897 11 6 0.3704 -2.5792 1.2495 12 6 -0.3778 -3.9152 1.2558 13 6 0.6377 -5.0602 1.2067 14 6 1.5106 -4.9081 -0.0412 15 7 2.2055 -3.6151 0.0005 16 6 3.1580 -3.4933 -1.1111 17 6 2.4100 -3.6195 -2.4398 18 6 2.2736 -5.0692 -2.9346 19 6 2.5536 -4.5280 -4.3485 20 6 3.2943 -3.3628 -3.6715 21 1 -0.4850 0.8400 -0.0004 22 1 0.9947 -2.5076 2.1402 23 1 -0.3482 -1.7598 1.2413 24 1 -1.0316 -3.9706 0.3854 25 1 -0.9738 -3.9958 2.1648 26 1 0.1100 -6.0131 1.1677 27 1 1.2663 -5.0284 2.0966 28 1 0.8831 -4.9546 -0.9312 29 1 2.2442 -5.7138 -0.0716 30 1 3.6508 -2.5222 -1.0625 31 1 3.9048 -4.2839 -1.0380 32 1 1.4723 -3.0640 -2.4521 33 1 3.0520 -5.7336 -2.5595 34 1 1.2711 -5.4794 -2.8137 35 1 1.6544 -4.2219 -4.8832 36 1 3.2021 -5.1705 -4.9440 37 1 3.1144 -2.3974 -4.1444 38 1 4.3522 -3.5597 -3.4981 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261011924.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:24 Heat of formation + Delta-G solvation = -5.744249 kcal Electronic energy + Delta-G solvation = -16481.114225 eV Core-core repulsion = 14129.751980 eV Total energy + Delta-G solvation = -2351.362244 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.67034 -38.54468 -34.87079 -34.08898 -31.27227 -28.55804 -27.09417 -26.45197 -24.77935 -23.26153 -22.27047 -20.46779 -19.88171 -18.28269 -16.99300 -16.77035 -15.81795 -15.66663 -15.43060 -14.96066 -14.51971 -14.26346 -13.92820 -13.59011 -13.23467 -13.17667 -12.85820 -12.63252 -12.58148 -12.29494 -12.00145 -11.93362 -11.71683 -11.63953 -11.37781 -11.19025 -10.96448 -10.86921 -10.54462 -10.36062 -8.68533 -8.07648 -6.18048 1.39588 1.40972 1.51111 2.42839 3.19301 3.47817 3.82665 3.89447 3.94080 4.08617 4.19480 4.25471 4.37155 4.58893 4.70115 4.75522 4.82120 4.87553 4.90501 4.93307 5.01193 5.07286 5.08243 5.11539 5.26017 5.27213 5.28140 5.39583 5.50463 5.52873 5.67540 5.69602 5.83221 5.87861 6.34654 6.53744 6.89428 6.99489 7.50419 8.97431 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.020891 B = 0.012037 C = 0.008510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.956440 B = 2325.533714 C = 3289.567932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.513 4.513 8 H 0.056 0.944 9 C 0.229 3.771 10 H -0.035 1.035 11 C -0.103 4.103 12 C -0.117 4.117 13 C -0.108 4.108 14 C 0.057 3.943 15 N -0.544 5.544 16 C 0.077 3.923 17 C -0.145 4.145 18 C -0.125 4.125 19 C -0.131 4.131 20 C -0.132 4.132 21 H 0.259 0.741 22 H 0.028 0.972 23 H 0.060 0.940 24 H 0.038 0.962 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.022 0.978 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.923 -10.037 -4.027 11.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.552 4.552 8 H 0.074 0.926 9 C 0.122 3.878 10 H -0.018 1.018 11 C -0.142 4.142 12 C -0.154 4.154 13 C -0.146 4.146 14 C -0.071 4.071 15 N -0.267 5.267 16 C -0.051 4.051 17 C -0.165 4.165 18 C -0.162 4.162 19 C -0.169 4.169 20 C -0.170 4.170 21 H 0.068 0.932 22 H 0.047 0.953 23 H 0.078 0.922 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.039 -9.896 -3.563 11.267 hybrid contribution -0.484 1.434 -0.677 1.658 sum 3.556 -8.463 -4.240 10.111 Atomic orbital electron populations 1.70027 1.07075 1.26924 1.52019 1.25649 0.95607 1.02134 0.95261 0.85643 0.78791 0.79708 0.78038 1.20379 1.21022 1.19370 1.21481 0.93078 0.91315 1.49296 0.92609 1.18890 0.89091 0.87999 0.91785 1.01779 1.21491 0.98415 0.96443 0.97859 1.21598 0.97719 0.95878 1.00248 1.21565 0.96967 0.97816 0.98243 1.22123 0.96459 0.91923 0.96634 1.62142 1.18950 1.02353 1.43271 1.22045 0.94664 1.01141 0.87295 1.23010 0.99268 0.97908 0.96340 1.23034 1.01505 0.95205 0.96481 1.22781 1.00318 0.97645 0.96117 1.22864 0.99506 0.98491 0.96147 0.93203 0.95282 0.92201 0.94277 0.92030 0.89934 0.91954 0.96015 0.90195 0.92462 0.90577 0.93090 0.88816 0.92498 0.91111 0.89539 0.93107 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.01 11.33 21.45 0.24 -53.76 16 2 C 0.01 0.66 5.30 84.65 0.45 1.11 16 3 Si 0.95 44.62 29.54 68.60 2.03 46.65 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.51 -28.65 7.87 25.60 0.20 -28.45 16 8 H 0.06 3.12 6.27 -2.91 -0.02 3.10 16 9 C 0.23 11.78 1.46 44.19 0.06 11.84 16 10 H -0.04 -2.03 6.47 -2.39 -0.02 -2.05 16 11 C -0.10 -5.14 5.14 30.65 0.16 -4.99 16 12 C -0.12 -4.63 6.00 30.67 0.18 -4.45 16 13 C -0.11 -3.63 6.09 30.65 0.19 -3.44 16 14 C 0.06 2.01 4.40 86.33 0.38 2.39 16 15 N -0.54 -23.36 4.69 -875.50 -4.10 -27.46 16 16 C 0.08 2.96 4.98 86.30 0.43 3.39 16 17 C -0.15 -5.20 2.93 -10.26 -0.03 -5.23 16 18 C -0.13 -3.47 6.11 31.18 0.19 -3.28 16 19 C -0.13 -3.30 8.09 31.18 0.25 -3.05 16 20 C -0.13 -3.91 7.65 31.12 0.24 -3.68 16 21 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 22 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 23 H 0.06 3.34 6.09 -2.39 -0.01 3.33 16 24 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 25 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.02 0.80 5.81 -2.39 -0.01 0.78 16 29 H 0.08 2.41 8.12 -2.38 -0.02 2.39 16 30 H 0.06 2.50 5.96 -2.39 -0.01 2.48 16 31 H 0.08 2.50 7.83 -2.39 -0.02 2.48 16 32 H 0.05 2.30 6.29 -2.39 -0.02 2.28 16 33 H 0.09 2.26 7.89 -2.39 -0.02 2.24 16 34 H 0.06 1.61 7.25 -2.39 -0.02 1.60 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.09 2.42 8.10 -2.39 -0.02 2.40 16 Total: -1.00 -60.97 282.40 1.88 -59.09 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 1.01 Total: 13.32 kcal Atomic # 6 Polarization: -40.54 SS G_CDS: 2.70 Total: -37.83 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -3.86 Total: -81.22 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -60.97 1.88 -59.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011924.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.347 kcal (2) G-P(sol) polarization free energy of solvation -60.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds