Wall clock time and date at job start Mon Mar 30 2020 03:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86811 * 119.99719 * 2 1 4 4 H 1.48501 * 109.46869 * 90.00105 * 3 2 1 5 5 H 1.48503 * 109.46804 * 210.00217 * 3 2 1 6 6 H 1.48493 * 109.46945 * 330.00113 * 3 2 1 7 7 C 1.37879 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99667 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99913 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47061 * 176.70146 * 9 7 2 11 11 H 1.08999 * 110.37121 * 57.05661 * 10 9 7 12 12 C 1.54385 * 110.41310 * 294.70705 * 10 9 7 13 13 C 1.54256 * 105.06289 * 217.36760 * 12 10 9 14 14 C 1.54384 * 105.06051 * 359.97438 * 13 12 10 15 15 N 1.48557 * 110.41480 * 179.53298 * 10 9 7 16 16 C 1.46898 * 111.00306 * 277.82005 * 15 10 9 17 17 C 1.52999 * 109.47167 * 164.31082 * 16 15 10 18 18 C 1.53776 * 113.61887 * 274.13678 * 17 16 15 19 19 C 1.53951 * 87.02318 * 220.04908 * 18 17 16 20 20 C 1.53782 * 87.10996 * 25.36350 * 19 18 17 21 21 H 0.97006 * 119.99830 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47203 * 296.69673 * 9 7 2 23 23 H 1.08993 * 109.47476 * 56.70493 * 9 7 2 24 24 H 1.08994 * 110.32054 * 336.26539 * 12 10 9 25 25 H 1.09003 * 110.32020 * 98.47181 * 12 10 9 26 26 H 1.08993 * 110.32545 * 118.89212 * 13 12 10 27 27 H 1.09000 * 110.32583 * 241.00433 * 13 12 10 28 28 H 1.09002 * 110.40835 * 142.62777 * 14 13 12 29 29 H 1.08998 * 110.41508 * 264.95630 * 14 13 12 30 30 H 1.08998 * 109.47214 * 284.31522 * 16 15 10 31 31 H 1.09008 * 109.46791 * 44.31335 * 16 15 10 32 32 H 1.09004 * 112.84791 * 45.34131 * 17 16 15 33 33 H 1.08997 * 113.61380 * 334.57204 * 18 17 16 34 34 H 1.09002 * 113.61458 * 105.47167 * 18 17 16 35 35 H 1.09003 * 113.53538 * 270.81538 * 19 18 17 36 36 H 1.08998 * 113.74212 * 139.94153 * 19 18 17 37 37 H 1.09006 * 113.61382 * 220.09303 * 20 19 18 38 38 H 1.08998 * 113.69435 * 89.19799 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4464 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2433 -3.6607 -0.0851 11 1 2.9539 -3.6128 0.7401 12 6 2.9869 -3.6377 -1.4379 13 6 3.1445 -5.1202 -1.8340 14 6 2.4834 -5.9143 -0.6870 15 7 1.5224 -4.9596 -0.0763 16 6 1.1797 -5.3623 1.2942 17 6 0.1231 -6.4681 1.2517 18 6 -1.3184 -5.9397 1.1639 19 6 -1.7030 -7.0578 2.1498 20 6 -0.2453 -7.0217 2.6383 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6692 -2.5836 0.9161 23 1 0.5812 -2.5312 -0.8609 24 1 2.3971 -3.1068 -2.1850 25 1 3.9650 -3.1702 -1.3243 26 1 2.6319 -5.3169 -2.7756 27 1 4.1998 -5.3799 -1.9167 28 1 1.9567 -6.7836 -1.0808 29 1 3.2321 -6.2228 0.0427 30 1 2.0726 -5.7321 1.7983 31 1 0.7852 -4.5035 1.8373 32 1 0.3498 -7.2423 0.5186 33 1 -1.4413 -4.9365 1.5719 34 1 -1.7659 -6.0540 0.1766 35 1 -1.9769 -7.9932 1.6618 36 1 -2.4246 -6.7475 2.9055 37 1 0.1723 -8.0083 2.8396 38 1 -0.0729 -6.3154 3.4504 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261015503.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:08 Heat of formation + Delta-G solvation = -17.320235 kcal Electronic energy + Delta-G solvation = -15788.350756 eV Core-core repulsion = 13436.486539 eV Total energy + Delta-G solvation = -2351.864217 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.53045 -39.04633 -35.58519 -33.14641 -31.88719 -28.15948 -27.42888 -26.46539 -24.82147 -23.56178 -21.71122 -21.13436 -20.09405 -18.82833 -17.17650 -16.46003 -16.20130 -15.77998 -15.59636 -15.25236 -14.70320 -14.58171 -13.96923 -13.64450 -13.35168 -13.22722 -13.07530 -12.78347 -12.52125 -12.23717 -12.11728 -11.96996 -11.92305 -11.53203 -11.45141 -11.25375 -11.09845 -11.04657 -10.67190 -10.53324 -9.36144 -8.68336 -6.37722 1.50759 1.60641 1.78112 2.55593 3.03327 3.16956 3.68005 3.73932 3.78858 3.87010 3.98404 4.00050 4.17267 4.30102 4.46110 4.51262 4.57524 4.66366 4.72668 4.84103 4.85603 4.87017 4.93568 4.98975 5.06881 5.07546 5.11714 5.21908 5.24621 5.31042 5.38201 5.46917 5.62346 5.88786 6.10801 6.19209 6.23787 6.58283 7.44693 8.72196 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026659 B = 0.007519 C = 0.006222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.041795 B = 3722.883249 C = 4498.928523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.040 4.040 3 Si 1.120 2.880 4 H -0.273 1.273 5 H -0.267 1.267 6 H -0.283 1.283 7 C -0.608 4.608 8 H 0.051 0.949 9 C 0.040 3.960 10 C 0.082 3.918 11 H 0.027 0.973 12 C -0.105 4.105 13 C -0.117 4.117 14 C 0.034 3.966 15 N -0.522 5.522 16 C 0.058 3.942 17 C -0.096 4.096 18 C -0.139 4.139 19 C -0.130 4.130 20 C -0.130 4.130 21 H 0.253 0.747 22 H -0.026 1.026 23 H -0.014 1.014 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.040 0.960 31 H 0.042 0.958 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.583 -15.110 1.521 15.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.237 4.237 3 Si 0.941 3.059 4 H -0.199 1.199 5 H -0.191 1.191 6 H -0.208 1.208 7 C -0.647 4.647 8 H 0.069 0.931 9 C 0.003 3.997 10 C -0.026 4.026 11 H 0.045 0.955 12 C -0.144 4.144 13 C -0.154 4.154 14 C -0.093 4.093 15 N -0.246 5.246 16 C -0.071 4.071 17 C -0.114 4.114 18 C -0.177 4.177 19 C -0.168 4.168 20 C -0.168 4.168 21 H 0.062 0.938 22 H -0.008 1.008 23 H 0.004 0.996 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.116 0.884 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.892 -13.475 1.230 13.837 hybrid contribution 0.512 -1.252 0.565 1.467 sum 3.404 -14.727 1.795 15.222 Atomic orbital electron populations 1.70876 1.08035 1.29726 1.48971 1.27451 0.96581 1.06863 0.92837 0.82910 0.74253 0.70974 0.77754 1.19877 1.19149 1.20832 1.22391 0.94514 0.93036 1.54713 0.93079 1.18935 0.94209 0.93278 0.93307 1.22414 0.93916 0.89543 0.96693 0.95470 1.22113 0.99197 0.97271 0.95782 1.22321 1.01396 0.93147 0.98570 1.23198 0.93777 0.95910 0.96425 1.65336 1.38321 1.02204 1.18724 1.22251 0.98053 0.97437 0.89353 1.22473 0.93549 0.96788 0.98629 1.22886 0.96923 0.98095 0.99784 1.22823 0.96610 0.98806 0.98527 1.22900 0.96638 1.01542 0.95712 0.93751 1.00754 0.99573 0.93477 0.91886 0.90766 0.89383 0.88955 0.93399 0.94165 0.93949 0.88400 0.92853 0.92252 0.88661 0.91155 0.89684 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.39 13.65 21.45 0.29 -60.10 16 2 C -0.04 -2.41 5.46 84.66 0.46 -1.95 16 3 Si 1.12 51.55 29.90 68.60 2.05 53.60 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.61 -35.74 8.63 25.60 0.22 -35.52 16 8 H 0.05 2.90 7.70 -2.91 -0.02 2.88 16 9 C 0.04 2.22 3.92 29.85 0.12 2.34 16 10 C 0.08 3.63 2.24 45.06 0.10 3.73 16 11 H 0.03 1.24 8.00 -2.39 -0.02 1.22 16 12 C -0.11 -4.09 6.02 31.49 0.19 -3.90 16 13 C -0.12 -3.36 7.00 31.49 0.22 -3.14 16 14 C 0.03 0.99 6.14 86.45 0.53 1.52 16 15 N -0.52 -19.42 4.98 -856.62 -4.27 -23.69 16 16 C 0.06 1.94 4.64 86.30 0.40 2.35 16 17 C -0.10 -2.60 3.82 -10.27 -0.04 -2.64 16 18 C -0.14 -4.05 7.65 31.18 0.24 -3.81 16 19 C -0.13 -2.82 8.09 31.18 0.25 -2.57 16 20 C -0.13 -2.87 7.65 31.12 0.24 -2.63 16 21 H 0.25 16.72 7.21 -92.70 -0.67 16.05 16 22 H -0.03 -1.54 7.22 -2.39 -0.02 -1.56 16 23 H -0.01 -0.85 7.82 -2.39 -0.02 -0.87 16 24 H 0.05 2.05 7.81 -2.39 -0.02 2.03 16 25 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.09 2.28 7.87 -2.39 -0.02 2.26 16 29 H 0.05 1.27 7.68 -2.39 -0.02 1.25 16 30 H 0.04 1.25 7.64 -2.39 -0.02 1.23 16 31 H 0.04 1.69 6.80 -2.38 -0.02 1.68 16 32 H 0.10 2.43 7.65 -2.38 -0.02 2.41 16 33 H 0.05 1.83 7.92 -2.39 -0.02 1.81 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.51 8.14 -2.38 -0.02 1.50 16 38 H 0.07 1.71 8.10 -2.39 -0.02 1.69 16 Total: -1.00 -67.53 297.53 2.10 -65.43 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 1.09 Total: 10.99 kcal Atomic # 6 Polarization: -49.16 SS G_CDS: 2.93 Total: -46.23 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -3.98 Total: -83.78 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 2.05 Total: 53.60 kcal Total: -67.53 2.10 -65.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261015503.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.108 kcal (2) G-P(sol) polarization free energy of solvation -67.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds