Wall clock time and date at job start Mon Mar 30 2020 02:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00142 * 2 1 4 4 H 1.48502 * 109.46842 * 239.99973 * 3 2 1 5 5 H 1.48506 * 109.46973 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47529 * 119.99801 * 3 2 1 7 7 C 1.37875 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00159 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00023 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47012 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46691 * 179.97438 * 10 9 7 12 12 C 1.53520 * 114.16688 * 185.00217 * 11 10 9 13 13 N 1.47485 * 87.93061 * 220.32973 * 12 11 10 14 14 C 1.46898 * 110.99953 * 138.70311 * 13 12 11 15 15 C 1.54262 * 110.03282 * 186.45458 * 14 13 12 16 16 C 1.54892 * 104.19846 * 217.10727 * 15 14 13 17 17 C 1.54891 * 102.74469 * 37.93867 * 16 15 14 18 18 C 1.53871 * 110.03039 * 69.28611 * 14 13 12 19 19 C 1.47481 * 87.83640 * 27.00706 * 13 12 11 20 20 H 0.96993 * 119.99769 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47196 * 59.99903 * 9 7 2 22 22 H 1.09000 * 109.47190 * 299.99341 * 9 7 2 23 23 H 1.09003 * 109.46905 * 60.00110 * 10 9 7 24 24 H 1.09000 * 109.46919 * 299.99892 * 10 9 7 25 25 H 1.09001 * 113.38529 * 318.07442 * 11 10 9 26 26 H 1.08994 * 113.47571 * 105.56177 * 12 11 10 27 27 H 1.09002 * 113.52609 * 335.10331 * 12 11 10 28 28 H 1.09001 * 110.05511 * 307.87012 * 14 13 12 29 29 H 1.09008 * 110.48425 * 335.78162 * 15 14 13 30 30 H 1.08993 * 110.48998 * 98.42288 * 15 14 13 31 31 H 1.08994 * 110.75053 * 279.62885 * 16 15 14 32 32 H 1.08991 * 110.75879 * 156.25264 * 16 15 14 33 33 H 1.09003 * 110.48682 * 203.38327 * 17 16 15 34 34 H 1.08998 * 110.59934 * 80.79984 * 17 16 15 35 35 H 1.09006 * 110.03188 * 238.56293 * 18 14 13 36 36 H 1.08997 * 110.03626 * 359.94916 * 18 14 13 37 37 H 1.09001 * 113.47512 * 87.75571 * 19 13 12 38 38 H 1.08997 * 113.47992 * 218.21916 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.3744 -6.2290 0.1234 13 7 1.5057 -6.8865 -0.8707 14 6 2.3001 -7.6587 -1.8353 15 6 1.3890 -8.2024 -2.9552 16 6 1.9670 -9.6050 -3.2678 17 6 2.3712 -10.1280 -1.8670 18 6 2.9246 -8.8830 -1.1434 19 6 1.1901 -5.5461 -1.3988 20 1 -0.4849 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.8720 -3.6043 0.8906 24 1 2.8720 -3.6043 -0.8895 25 1 0.6196 -4.9893 0.6700 26 1 2.3378 -6.6952 1.1079 27 1 3.3932 -6.0681 -0.2292 28 1 3.0827 -7.0315 -2.2622 29 1 0.3602 -8.2833 -2.6043 30 1 1.4435 -7.5624 -3.8357 31 1 2.8388 -9.5274 -3.9174 32 1 1.2066 -10.2454 -3.7146 33 1 3.1426 -10.8933 -1.9535 34 1 1.5025 -10.5214 -1.3392 35 1 4.0103 -8.8500 -1.2346 36 1 2.6390 -8.9037 -0.0917 37 1 1.8926 -5.2020 -2.1579 38 1 0.1499 -5.4335 -1.7043 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261028656.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:48 Heat of formation + Delta-G solvation = 5.209587 kcal Electronic energy + Delta-G solvation = -15234.111433 eV Core-core repulsion = 12883.224183 eV Total energy + Delta-G solvation = -2350.887250 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.22899 -37.16964 -33.66431 -31.56342 -29.03011 -28.88813 -26.07477 -25.44353 -23.60244 -20.87210 -20.66723 -19.45835 -19.10896 -16.43526 -16.10454 -15.44864 -15.19760 -14.49373 -14.04248 -13.91907 -13.38597 -12.96355 -12.49403 -12.19319 -12.02147 -11.66503 -11.21888 -11.16221 -11.04603 -10.97294 -10.83783 -10.71144 -10.60562 -10.42323 -10.27631 -10.15849 -9.55701 -9.21748 -9.04114 -8.55054 -8.30839 -5.96414 -3.98839 3.34825 3.39193 3.41623 4.21938 4.44554 4.48437 4.57709 4.84984 4.97586 5.19084 5.31961 5.36302 5.39084 5.43869 5.54900 5.56770 5.69485 5.73680 5.80449 5.87231 5.95549 5.99734 6.03933 6.12630 6.20516 6.24327 6.27788 6.43448 6.54288 6.69490 6.98098 7.15530 7.38752 7.72219 7.88409 8.04573 8.46914 9.08454 9.64974 11.14781 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.066703 B = 0.004474 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.668536 B = 6257.533198 C = 6332.831153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.023 3.977 10 C -0.100 4.100 11 C -0.108 4.108 12 C -0.001 4.001 13 N -0.470 5.470 14 C 0.043 3.957 15 C -0.115 4.115 16 C -0.124 4.124 17 C -0.120 4.120 18 C -0.117 4.117 19 C 0.005 3.995 20 H 0.260 0.740 21 H 0.016 0.984 22 H 0.016 0.984 23 H 0.051 0.949 24 H 0.046 0.954 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.444 -17.487 -4.109 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.138 4.138 11 C -0.126 4.126 12 C -0.130 4.130 13 N -0.192 5.192 14 C -0.066 4.066 15 C -0.153 4.153 16 C -0.162 4.162 17 C -0.158 4.158 18 C -0.155 4.155 19 C -0.123 4.123 20 H 0.070 0.930 21 H 0.034 0.966 22 H 0.034 0.966 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.115 0.885 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.770 -17.861 -3.924 18.672 hybrid contribution 1.174 1.470 -0.376 1.918 sum 4.945 -16.392 -4.300 17.653 Atomic orbital electron populations 1.69955 1.06027 1.26624 1.50888 1.25019 0.94828 0.99167 0.95401 0.86685 0.79607 0.83286 0.78573 1.20311 1.21294 1.20266 1.21254 0.92950 0.91267 1.50533 0.92883 1.19070 0.93961 0.91140 0.97210 1.21602 0.98697 0.93390 1.00157 1.22843 0.99000 0.94319 0.96471 1.23876 0.96226 0.95301 0.97584 1.69056 1.29044 1.11642 1.09464 1.22886 0.94756 0.95566 0.93379 1.22355 1.00034 0.95786 0.97095 1.22467 1.00323 0.96431 0.96939 1.22301 1.00518 0.97086 0.95879 1.22147 0.99166 0.93757 1.00410 1.23863 1.02116 0.88775 0.97581 0.92993 0.96604 0.96601 0.93052 0.93509 0.88541 0.90518 0.91805 0.93458 0.90500 0.92003 0.91769 0.91651 0.92075 0.91542 0.92195 0.90948 0.91597 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.60 4.96 -27.88 -0.14 0.47 16 10 C -0.10 -2.07 5.06 -26.73 -0.14 -2.20 16 11 C -0.11 -1.87 3.99 -90.09 -0.36 -2.23 16 12 C 0.00 -0.02 6.53 -7.53 -0.05 -0.07 16 13 N -0.47 -6.87 6.00 -235.21 -1.41 -8.28 16 14 C 0.04 0.55 2.24 -66.60 -0.15 0.40 16 15 C -0.11 -1.31 6.25 -25.07 -0.16 -1.47 16 16 C -0.12 -1.16 6.91 -24.74 -0.17 -1.34 16 17 C -0.12 -1.14 6.83 -25.07 -0.17 -1.31 16 18 C -0.12 -1.28 6.18 -25.61 -0.16 -1.44 16 19 C 0.01 0.08 7.02 -7.54 -0.05 0.03 16 20 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 21 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.05 0.95 7.81 -51.93 -0.41 0.54 16 25 H 0.10 1.75 8.12 -51.93 -0.42 1.33 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.06 0.91 7.78 -51.93 -0.40 0.51 16 28 H 0.05 0.62 7.61 -51.93 -0.40 0.23 16 29 H 0.08 0.95 8.05 -51.92 -0.42 0.53 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.85 7.58 -51.93 -0.39 0.46 16 37 H 0.07 1.06 7.41 -51.93 -0.38 0.67 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 300.67 15.07 4.53 4.53 Total: -1.00 -29.58 300.67 -10.13 -39.71 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -7.01 Total: -3.45 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -1.95 Total: -22.86 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: -0.68 Total: -34.75 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.58 -10.13 -39.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261028656.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.924 kcal (2) G-P(sol) polarization free energy of solvation -29.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds