Wall clock time and date at job start Mon Mar 30 2020 02:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00142 * 2 1 4 4 H 1.48502 * 109.46842 * 239.99973 * 3 2 1 5 5 H 1.48506 * 109.46973 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47529 * 119.99801 * 3 2 1 7 7 C 1.37875 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00159 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00023 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47012 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46691 * 179.97438 * 10 9 7 12 12 C 1.53520 * 114.16688 * 185.00217 * 11 10 9 13 13 N 1.47485 * 87.93061 * 220.32973 * 12 11 10 14 14 C 1.46898 * 110.99953 * 138.70311 * 13 12 11 15 15 C 1.54262 * 110.03282 * 186.45458 * 14 13 12 16 16 C 1.54892 * 104.19846 * 217.10727 * 15 14 13 17 17 C 1.54891 * 102.74469 * 37.93867 * 16 15 14 18 18 C 1.53871 * 110.03039 * 69.28611 * 14 13 12 19 19 C 1.47481 * 87.83640 * 27.00706 * 13 12 11 20 20 H 0.96993 * 119.99769 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47196 * 59.99903 * 9 7 2 22 22 H 1.09000 * 109.47190 * 299.99341 * 9 7 2 23 23 H 1.09003 * 109.46905 * 60.00110 * 10 9 7 24 24 H 1.09000 * 109.46919 * 299.99892 * 10 9 7 25 25 H 1.09001 * 113.38529 * 318.07442 * 11 10 9 26 26 H 1.08994 * 113.47571 * 105.56177 * 12 11 10 27 27 H 1.09002 * 113.52609 * 335.10331 * 12 11 10 28 28 H 1.09001 * 110.05511 * 307.87012 * 14 13 12 29 29 H 1.09008 * 110.48425 * 335.78162 * 15 14 13 30 30 H 1.08993 * 110.48998 * 98.42288 * 15 14 13 31 31 H 1.08994 * 110.75053 * 279.62885 * 16 15 14 32 32 H 1.08991 * 110.75879 * 156.25264 * 16 15 14 33 33 H 1.09003 * 110.48682 * 203.38327 * 17 16 15 34 34 H 1.08998 * 110.59934 * 80.79984 * 17 16 15 35 35 H 1.09006 * 110.03188 * 238.56293 * 18 14 13 36 36 H 1.08997 * 110.03626 * 359.94916 * 18 14 13 37 37 H 1.09001 * 113.47512 * 87.75571 * 19 13 12 38 38 H 1.08997 * 113.47992 * 218.21916 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.3744 -6.2290 0.1234 13 7 1.5057 -6.8865 -0.8707 14 6 2.3001 -7.6587 -1.8353 15 6 1.3890 -8.2024 -2.9552 16 6 1.9670 -9.6050 -3.2678 17 6 2.3712 -10.1280 -1.8670 18 6 2.9246 -8.8830 -1.1434 19 6 1.1901 -5.5461 -1.3988 20 1 -0.4849 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.8720 -3.6043 0.8906 24 1 2.8720 -3.6043 -0.8895 25 1 0.6196 -4.9893 0.6700 26 1 2.3378 -6.6952 1.1079 27 1 3.3932 -6.0681 -0.2292 28 1 3.0827 -7.0315 -2.2622 29 1 0.3602 -8.2833 -2.6043 30 1 1.4435 -7.5624 -3.8357 31 1 2.8388 -9.5274 -3.9174 32 1 1.2066 -10.2454 -3.7146 33 1 3.1426 -10.8933 -1.9535 34 1 1.5025 -10.5214 -1.3392 35 1 4.0103 -8.8500 -1.2346 36 1 2.6390 -8.9037 -0.0917 37 1 1.8926 -5.2020 -2.1579 38 1 0.1499 -5.4335 -1.7043 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261028656.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:48 Heat of formation + Delta-G solvation = -12.286164 kcal Electronic energy + Delta-G solvation = -15234.870106 eV Core-core repulsion = 12883.224183 eV Total energy + Delta-G solvation = -2351.645923 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.42788 -38.15051 -35.66492 -33.39120 -30.39137 -29.74683 -27.69926 -26.68788 -25.20828 -22.64088 -21.47370 -20.60914 -20.41397 -18.42521 -17.30830 -16.63677 -16.45363 -16.32411 -15.29451 -15.12808 -14.56307 -14.30900 -14.15913 -13.54201 -13.47554 -13.34377 -12.84884 -12.57984 -12.34549 -12.13702 -11.99126 -11.95264 -11.87581 -11.64484 -11.58361 -11.41081 -11.31790 -11.03542 -10.85382 -10.52984 -9.79852 -8.18544 -6.30181 1.39940 1.43106 1.51055 2.41587 3.06429 3.14143 3.47794 3.71322 3.71790 3.83616 4.06996 4.33199 4.38708 4.46664 4.56986 4.57873 4.61864 4.68831 4.77138 4.80412 4.82112 4.89416 4.98646 5.01760 5.06646 5.10833 5.19650 5.25163 5.31869 5.39460 5.47321 5.50171 5.54391 5.78142 5.87256 6.22420 6.27305 6.87327 7.39124 8.92930 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.066703 B = 0.004474 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.668536 B = 6257.533198 C = 6332.831153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.085 4.085 11 C -0.114 4.114 12 C 0.013 3.987 13 N -0.472 5.472 14 C 0.038 3.962 15 C -0.116 4.116 16 C -0.118 4.118 17 C -0.117 4.117 18 C -0.115 4.115 19 C 0.008 3.992 20 H 0.263 0.737 21 H -0.010 1.010 22 H -0.011 1.011 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.112 -18.329 -4.476 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.010 4.010 10 C -0.123 4.123 11 C -0.133 4.133 12 C -0.116 4.116 13 N -0.194 5.194 14 C -0.071 4.071 15 C -0.154 4.154 16 C -0.156 4.156 17 C -0.155 4.155 18 C -0.153 4.153 19 C -0.121 4.121 20 H 0.072 0.928 21 H 0.009 0.991 22 H 0.007 0.993 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.450 -18.723 -4.291 19.966 hybrid contribution 0.613 1.719 -0.266 1.844 sum 6.063 -17.004 -4.557 18.619 Atomic orbital electron populations 1.70097 1.07836 1.27787 1.51686 1.25990 0.95753 1.03368 0.94736 0.85516 0.78294 0.78134 0.79201 1.19169 1.20837 1.19121 1.21722 0.93540 0.92570 1.50559 0.92235 1.18971 0.94402 0.93001 0.94631 1.21376 0.97547 0.92936 1.00446 1.22716 0.99196 0.93893 0.97501 1.23783 0.96013 0.93359 0.98409 1.69053 1.29714 1.10777 1.09864 1.23012 0.94717 0.95939 0.93445 1.22361 0.99237 0.97226 0.96611 1.22460 1.00887 0.95052 0.97193 1.22303 1.00901 0.96797 0.95513 1.22148 0.99758 0.93524 0.99872 1.23786 1.01746 0.89795 0.96739 0.92805 0.99135 0.99276 0.92669 0.93105 0.89738 0.89263 0.90859 0.93798 0.91728 0.92073 0.90818 0.90549 0.90312 0.91832 0.91096 0.91716 0.91509 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.96 44.68 29.54 68.60 2.03 46.70 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.55 -31.61 9.11 25.60 0.23 -31.37 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.45 4.96 29.85 0.15 1.60 16 10 C -0.09 -3.52 5.06 30.60 0.15 -3.37 16 11 C -0.11 -3.98 3.99 -10.45 -0.04 -4.02 16 12 C 0.01 0.36 6.53 83.58 0.55 0.91 16 13 N -0.47 -13.35 6.00 -898.07 -5.39 -18.74 16 14 C 0.04 0.90 2.24 45.64 0.10 1.00 16 15 C -0.12 -2.50 6.25 31.67 0.20 -2.31 16 16 C -0.12 -1.94 6.91 31.89 0.22 -1.72 16 17 C -0.12 -1.93 6.83 31.67 0.22 -1.71 16 18 C -0.12 -2.27 6.18 31.32 0.19 -2.07 16 19 C 0.01 0.26 7.02 83.58 0.59 0.85 16 20 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 21 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 22 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 23 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.05 2.04 7.81 -2.39 -0.02 2.02 16 25 H 0.08 3.14 8.12 -2.39 -0.02 3.12 16 26 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.07 1.94 7.78 -2.39 -0.02 1.92 16 28 H 0.04 1.08 7.61 -2.39 -0.02 1.06 16 29 H 0.06 1.54 8.05 -2.38 -0.02 1.52 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.06 1.38 7.58 -2.39 -0.02 1.36 16 37 H 0.07 2.12 7.41 -2.39 -0.02 2.10 16 38 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -63.34 300.67 0.92 -62.41 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.98 Total: 8.93 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 3.02 Total: -41.79 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -5.11 Total: -76.26 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -63.34 0.92 -62.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261028656.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.128 kcal (2) G-P(sol) polarization free energy of solvation -63.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds