Wall clock time and date at job start Mon Mar 30 2020 02:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00189 * 2 1 4 4 H 1.48504 * 109.47265 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47096 * 299.99887 * 3 2 1 6 6 H 1.48497 * 109.47046 * 60.00498 * 3 2 1 7 7 C 1.37885 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99905 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99511 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46835 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47096 * 179.97438 * 10 9 7 12 12 H 1.08997 * 112.95757 * 297.14655 * 11 10 9 13 13 C 1.53937 * 113.75787 * 165.49448 * 11 10 9 14 14 C 1.53936 * 86.33941 * 221.96456 * 13 11 10 15 15 N 1.47956 * 86.18109 * 23.72592 * 14 13 11 16 16 C 1.46904 * 110.99835 * 222.41410 * 15 14 13 17 17 C 1.54267 * 110.03028 * 52.04681 * 16 15 14 18 18 C 1.54888 * 104.19413 * 217.10781 * 17 16 15 19 19 C 1.54887 * 102.74880 * 37.94096 * 18 17 16 20 20 C 1.53876 * 110.03095 * 294.87943 * 16 15 14 21 21 H 0.97004 * 119.99953 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47026 * 60.00312 * 9 7 2 23 23 H 1.08998 * 109.47093 * 299.99915 * 9 7 2 24 24 H 1.09008 * 109.46677 * 59.99822 * 10 9 7 25 25 H 1.08993 * 109.47109 * 300.00170 * 10 9 7 26 26 H 1.08999 * 113.73326 * 336.32937 * 13 11 10 27 27 H 1.09007 * 113.72848 * 107.60460 * 13 11 10 28 28 H 1.09003 * 113.74972 * 138.04251 * 14 13 11 29 29 H 1.08994 * 113.76070 * 269.40168 * 14 13 11 30 30 H 1.09000 * 110.01726 * 173.48149 * 16 15 14 31 31 H 1.09004 * 110.48530 * 335.78271 * 17 16 15 32 32 H 1.09001 * 110.49091 * 98.42573 * 17 16 15 33 33 H 1.09004 * 110.75339 * 279.62493 * 18 17 16 34 34 H 1.09004 * 110.75908 * 156.26086 * 18 17 16 35 35 H 1.09006 * 110.48735 * 203.37981 * 19 18 17 36 36 H 1.08996 * 110.48654 * 80.74368 * 19 18 17 37 37 H 1.08996 * 110.03235 * 238.56594 * 20 16 15 38 38 H 1.08999 * 110.03248 * 359.97438 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 1 0.8720 -5.1265 0.8926 13 6 2.3509 -6.2062 -0.3552 14 6 1.1630 -6.6822 -1.2107 15 7 0.7593 -5.2598 -1.2643 16 6 -0.6916 -5.1172 -1.0836 17 6 -1.1419 -5.8657 0.1879 18 6 -2.5189 -6.4648 -0.1917 19 6 -2.3126 -6.8878 -1.6673 20 6 -1.4360 -5.7670 -2.2632 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 2.8726 -3.6047 0.8878 25 1 2.8712 -3.6040 -0.8922 26 1 3.2386 -5.9572 -0.9368 27 1 2.5664 -6.8532 0.4952 28 1 1.4547 -7.0926 -2.1774 29 1 0.4607 -7.3181 -0.6718 30 1 -0.9566 -4.0624 -1.0103 31 1 -0.4356 -6.6587 0.4340 32 1 -1.2445 -5.1724 1.0227 33 1 -3.3030 -5.7118 -0.1116 34 1 -2.7482 -7.3304 0.4299 35 1 -3.2696 -6.9403 -2.1865 36 1 -1.7956 -7.8458 -1.7208 37 1 -2.0629 -5.0279 -2.7619 38 1 -0.7207 -6.1878 -2.9699 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261031026.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:54 Heat of formation + Delta-G solvation = -5.624799 kcal Electronic energy + Delta-G solvation = -15945.121802 eV Core-core repulsion = 13593.764737 eV Total energy + Delta-G solvation = -2351.357065 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.69095 -37.67428 -35.56892 -33.00240 -30.84745 -29.70477 -28.19589 -26.36416 -25.04828 -22.48034 -22.07935 -20.83383 -19.50130 -18.40016 -17.75371 -16.74609 -16.48089 -15.89442 -15.58090 -14.83888 -14.44137 -14.22911 -14.14970 -13.63396 -13.53419 -12.92930 -12.76857 -12.62641 -12.30174 -12.17302 -12.09290 -12.00184 -11.90723 -11.74033 -11.53142 -11.40483 -11.26195 -11.06683 -10.78057 -10.54202 -9.42251 -8.19401 -6.30702 1.37194 1.38203 1.51642 2.40173 3.07057 3.12857 3.62321 3.73115 3.77926 3.85821 4.05228 4.37940 4.41913 4.43708 4.53796 4.56593 4.61307 4.74025 4.75994 4.81598 4.84166 4.93873 5.01534 5.06673 5.07711 5.18344 5.21914 5.29582 5.33462 5.42319 5.45003 5.53011 5.70419 5.84925 5.88851 6.27486 6.35921 6.87348 7.38106 8.92182 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.033925 B = 0.006972 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.155327 B = 4015.100251 C = 4523.567281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.039 3.961 10 C -0.083 4.083 11 C 0.027 3.973 12 H 0.074 0.926 13 C -0.132 4.132 14 C 0.002 3.998 15 N -0.489 5.489 16 C 0.044 3.956 17 C -0.154 4.154 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.113 4.113 21 H 0.262 0.738 22 H -0.010 1.010 23 H -0.022 1.022 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.040 0.960 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.549 -16.546 -1.232 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.075 0.925 9 C 0.002 3.998 10 C -0.121 4.121 11 C -0.082 4.082 12 H 0.092 0.908 13 C -0.169 4.169 14 C -0.126 4.126 15 N -0.211 5.211 16 C -0.066 4.066 17 C -0.193 4.193 18 C -0.156 4.156 19 C -0.151 4.151 20 C -0.151 4.151 21 H 0.071 0.929 22 H 0.008 0.992 23 H -0.003 1.003 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.560 -16.031 -1.837 16.211 hybrid contribution -0.242 1.186 0.735 1.416 sum -1.801 -14.845 -1.102 14.995 Atomic orbital electron populations 1.70124 1.07828 1.27494 1.51940 1.26007 0.95787 1.03387 0.94785 0.85399 0.79102 0.78734 0.77810 1.18553 1.20416 1.20165 1.21801 0.93462 0.92729 1.50174 0.92454 1.18814 0.94177 0.92880 0.93921 1.21327 0.97477 0.93269 1.00002 1.23555 0.96080 0.95896 0.92656 0.90796 1.23370 0.97662 0.95648 1.00255 1.23993 0.96565 0.90936 1.01135 1.68715 1.06352 1.14673 1.31359 1.22731 0.89908 0.98480 0.95436 1.23051 0.99020 0.99823 0.97384 1.22440 0.95582 1.00556 0.96975 1.22348 0.99780 0.97866 0.95085 1.22117 0.98263 0.98007 0.96746 0.92942 0.99178 1.00321 0.92654 0.93387 0.89525 0.89213 0.88910 0.89255 0.94158 0.89343 0.93677 0.92312 0.89592 0.90443 0.90117 0.92788 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.27 13.29 21.45 0.28 -58.99 16 2 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 3 Si 0.97 46.11 29.54 68.60 2.03 48.14 16 4 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.54 -32.75 9.11 25.60 0.23 -32.52 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.04 2.21 4.92 29.85 0.15 2.35 16 10 C -0.08 -3.66 5.20 30.60 0.16 -3.50 16 11 C 0.03 0.96 2.96 45.02 0.13 1.09 16 12 H 0.07 2.63 6.02 -2.39 -0.01 2.61 16 13 C -0.13 -3.45 7.85 31.24 0.25 -3.20 16 14 C 0.00 0.04 6.64 86.41 0.57 0.61 16 15 N -0.49 -16.93 5.94 -854.40 -5.08 -22.01 16 16 C 0.04 1.50 3.33 45.64 0.15 1.65 16 17 C -0.15 -4.36 4.40 31.67 0.14 -4.22 16 18 C -0.12 -2.64 6.91 31.88 0.22 -2.42 16 19 C -0.11 -2.32 6.83 31.67 0.22 -2.11 16 20 C -0.11 -3.13 6.13 31.32 0.19 -2.94 16 21 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 22 H -0.01 -0.63 7.28 -2.39 -0.02 -0.65 16 23 H -0.02 -1.32 8.14 -2.39 -0.02 -1.33 16 24 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 25 H 0.05 2.15 8.12 -2.39 -0.02 2.13 16 26 H 0.09 2.30 8.08 -2.39 -0.02 2.28 16 27 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.09 1.91 5.57 -2.39 -0.01 1.90 16 30 H 0.04 1.79 7.33 -2.39 -0.02 1.78 16 31 H 0.09 2.18 5.00 -2.38 -0.01 2.17 16 32 H 0.04 1.46 7.92 -2.39 -0.02 1.44 16 33 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.94 7.41 -2.39 -0.02 1.92 16 Total: -1.00 -68.56 291.90 1.11 -67.45 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 1.00 Total: 10.28 kcal Atomic # 6 Polarization: -47.75 SS G_CDS: 2.87 Total: -44.87 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -4.79 Total: -81.00 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -68.56 1.11 -67.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031026.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.828 kcal (2) G-P(sol) polarization free energy of solvation -68.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds