Wall clock time and date at job start Mon Mar 30 2020 02:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46496 * 119.99619 * 89.99960 * 3 2 1 5 5 C 1.53007 * 109.47224 * 90.00069 * 4 3 2 6 6 C 1.39890 * 120.00126 * 269.99776 * 3 2 1 7 7 C 1.39253 * 125.54123 * 4.72332 * 6 3 2 8 8 C 1.39705 * 107.50037 * 179.89349 * 7 6 3 9 9 C 1.40226 * 126.59228 * 180.10802 * 8 7 6 10 10 H 1.07997 * 119.99374 * 180.29473 * 9 8 7 11 11 C 1.40135 * 120.00270 * 0.29585 * 9 8 7 12 12 N 1.30765 * 120.00193 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99750 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47362 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47146 * 119.99988 * 13 11 9 16 16 H 1.48498 * 109.47216 * 239.99631 * 13 11 9 17 17 N 1.37518 * 106.80444 * 0.35597 * 8 7 6 18 18 C 1.46498 * 126.14288 * 179.79363 * 17 8 7 19 19 N 1.31692 * 125.54336 * 185.02333 * 6 3 2 20 20 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 21 21 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 22 22 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 24 24 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 25 25 H 1.09006 * 109.47349 * 209.99918 * 4 3 2 26 26 H 1.09003 * 109.47665 * 330.00083 * 4 3 2 27 27 H 1.08997 * 109.46824 * 59.99917 * 5 4 3 28 28 H 1.08994 * 109.46887 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.46832 * 299.99655 * 5 4 3 30 30 H 1.08003 * 126.24662 * 0.03581 * 7 6 3 31 31 H 0.97007 * 120.00520 * 180.02562 * 12 11 9 32 32 H 1.08997 * 109.47322 * 270.00422 * 18 17 8 33 33 H 1.09002 * 109.46804 * 30.00303 * 18 17 8 34 34 H 1.09001 * 109.46771 * 149.99893 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.7075 1.8313 1.7105 6 6 2.2516 2.0407 -1.2115 7 6 1.9726 1.5314 -2.4771 8 6 2.3498 2.4988 -3.4118 9 6 2.2412 2.4008 -4.8064 10 1 2.5722 3.2163 -5.4323 11 6 1.7033 1.2449 -5.3879 12 7 1.3021 0.2576 -4.6300 13 14 1.5580 1.1149 -7.2458 14 1 2.0778 2.3574 -7.8711 15 1 2.3488 -0.0476 -7.7240 16 1 0.1325 0.9310 -7.6192 17 7 2.8533 3.5631 -2.7013 18 6 3.3764 4.8093 -3.2664 19 7 2.7758 3.2419 -1.3407 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3635 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.0955 3.1411 1.1385 26 1 1.5817 1.6877 2.0284 27 1 4.3883 2.2155 0.9509 28 1 3.8892 2.3454 2.6542 29 1 3.8744 0.7621 1.8408 30 1 1.5410 0.5658 -2.6960 31 1 0.9300 -0.5427 -5.0326 32 1 4.4454 4.7039 -3.4513 33 1 2.8651 5.0256 -4.2044 34 1 3.2079 5.6256 -2.5641 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261031060.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:51 Heat of formation + Delta-G solvation = 68.663860 kcal Electronic energy + Delta-G solvation = -15617.083622 eV Core-core repulsion = 13165.407611 eV Total energy + Delta-G solvation = -2451.676010 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.84371 -36.27989 -33.54226 -31.48709 -31.31305 -28.67059 -27.94235 -25.14430 -24.48261 -22.83327 -21.22457 -19.45908 -17.87089 -16.84463 -15.67504 -14.81936 -14.48108 -13.95514 -13.78367 -13.31286 -13.13066 -12.74892 -12.26173 -12.21368 -11.77973 -11.56296 -11.42947 -11.40682 -11.14918 -11.10158 -10.81643 -10.51599 -10.36889 -10.27195 -9.74045 -9.46809 -8.50746 -8.42475 -6.96186 -6.56040 -6.04668 -4.40140 2.96209 3.09436 3.14008 3.79327 3.80067 3.97102 4.72538 4.73918 5.46183 5.54851 5.64868 5.80090 5.91329 5.95905 6.05059 6.08591 6.15773 6.26784 6.31893 6.35200 6.45278 6.57510 6.74522 6.87941 7.08434 7.20806 7.57249 7.63516 7.95448 8.24692 8.43669 8.66895 8.98291 9.18181 9.36324 9.90524 10.32311 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.029345 B = 0.009233 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.930169 B = 3031.878564 C = 3803.315509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.144 3.856 3 N -0.612 5.612 4 C 0.139 3.861 5 C -0.165 4.165 6 C 0.332 3.668 7 C -0.386 4.386 8 C 0.266 3.734 9 C -0.451 4.451 10 H 0.074 0.926 11 C 0.078 3.922 12 N -0.786 5.786 13 Si 0.921 3.079 14 H -0.263 1.263 15 H -0.274 1.274 16 H -0.274 1.274 17 N -0.439 5.439 18 C 0.139 3.861 19 N -0.433 5.433 20 H 0.043 0.957 21 H 0.064 0.936 22 H 0.051 0.949 23 H 0.075 0.925 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.159 0.841 31 H 0.275 0.725 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.121 -0.480 4.410 4.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.020 3.980 3 N -0.335 5.335 4 C 0.015 3.985 5 C -0.224 4.224 6 C 0.081 3.919 7 C -0.418 4.418 8 C 0.148 3.852 9 C -0.488 4.488 10 H 0.092 0.908 11 C -0.141 4.141 12 N -0.413 5.413 13 Si 0.746 3.254 14 H -0.187 1.187 15 H -0.199 1.199 16 H -0.199 1.199 17 N -0.230 5.230 18 C -0.005 4.005 19 N -0.265 5.265 20 H 0.062 0.938 21 H 0.083 0.917 22 H 0.070 0.930 23 H 0.093 0.907 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.176 0.824 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.273 0.346 5.070 5.089 hybrid contribution -0.357 -0.726 -1.286 1.519 sum -0.085 -0.380 3.785 3.805 Atomic orbital electron populations 1.22221 0.97664 1.00665 1.02109 1.21021 0.93086 0.82605 1.01294 1.45405 1.74820 1.12269 1.01049 1.20994 0.94537 0.97522 0.85448 1.22196 0.99141 1.00712 1.00379 1.18984 0.95189 0.91613 0.86106 1.21712 1.27230 1.05447 0.87439 1.18613 0.89658 0.84755 0.92215 1.18639 1.38329 1.02094 0.89701 0.90807 1.25714 0.93177 0.94699 1.00529 1.69759 1.30207 1.04905 1.36404 0.86065 0.78548 0.79121 0.81711 1.18703 1.19935 1.19935 1.47936 1.57767 1.14373 1.02921 1.21061 0.97345 0.84637 0.97478 1.76822 1.37601 1.17050 0.95021 0.93755 0.91669 0.92964 0.90679 0.92709 0.91433 0.92864 0.92245 0.93222 0.93523 0.82368 0.91363 0.94233 0.91537 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 10.24 37.16 0.38 -2.43 16 2 C 0.14 2.62 6.08 -4.04 -0.02 2.60 16 3 N -0.61 -12.94 2.61 -173.69 -0.45 -13.39 16 4 C 0.14 2.50 6.26 -4.04 -0.03 2.47 16 5 C -0.17 -2.69 10.24 37.16 0.38 -2.30 16 6 C 0.33 8.58 7.54 -154.70 -1.17 7.41 16 7 C -0.39 -10.77 8.82 -38.66 -0.34 -11.11 16 8 C 0.27 7.49 6.75 -84.02 -0.57 6.93 16 9 C -0.45 -12.12 9.01 -38.12 -0.34 -12.46 16 10 H 0.07 1.86 7.20 -52.49 -0.38 1.49 16 11 C 0.08 1.96 5.50 -17.29 -0.10 1.87 16 12 N -0.79 -20.35 10.29 55.56 0.57 -19.78 16 13 Si 0.92 18.75 29.56 -169.99 -5.03 13.72 16 14 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 15 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 16 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 17 N -0.44 -11.55 4.09 -65.40 -0.27 -11.81 16 18 C 0.14 2.86 11.27 59.85 0.67 3.54 16 19 N -0.43 -11.51 11.93 31.22 0.37 -11.14 16 20 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 21 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.07 1.50 7.00 -51.93 -0.36 1.14 16 24 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 25 H 0.07 1.32 7.73 -51.93 -0.40 0.91 16 26 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.16 4.49 5.05 -52.48 -0.27 4.23 16 31 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.28 7.40 -51.93 -0.38 0.89 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 285.45 15.07 4.30 4.30 Total: -1.00 -30.59 285.45 -6.77 -37.37 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.15 Total: 4.22 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -1.13 Total: -3.49 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.22 Total: -56.12 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.59 -6.77 -37.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031060.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.029 kcal (2) G-P(sol) polarization free energy of solvation -30.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds