Wall clock time and date at job start Mon Mar 30 2020 02:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46496 * 119.99619 * 89.99960 * 3 2 1 5 5 C 1.53007 * 109.47224 * 90.00069 * 4 3 2 6 6 C 1.39890 * 120.00126 * 269.99776 * 3 2 1 7 7 C 1.39253 * 125.54123 * 4.72332 * 6 3 2 8 8 C 1.39705 * 107.50037 * 179.89349 * 7 6 3 9 9 C 1.40226 * 126.59228 * 180.10802 * 8 7 6 10 10 H 1.07997 * 119.99374 * 180.29473 * 9 8 7 11 11 C 1.40135 * 120.00270 * 0.29585 * 9 8 7 12 12 N 1.30765 * 120.00193 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99750 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47362 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47146 * 119.99988 * 13 11 9 16 16 H 1.48498 * 109.47216 * 239.99631 * 13 11 9 17 17 N 1.37518 * 106.80444 * 0.35597 * 8 7 6 18 18 C 1.46498 * 126.14288 * 179.79363 * 17 8 7 19 19 N 1.31692 * 125.54336 * 185.02333 * 6 3 2 20 20 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 21 21 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 22 22 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 24 24 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 25 25 H 1.09006 * 109.47349 * 209.99918 * 4 3 2 26 26 H 1.09003 * 109.47665 * 330.00083 * 4 3 2 27 27 H 1.08997 * 109.46824 * 59.99917 * 5 4 3 28 28 H 1.08994 * 109.46887 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.46832 * 299.99655 * 5 4 3 30 30 H 1.08003 * 126.24662 * 0.03581 * 7 6 3 31 31 H 0.97007 * 120.00520 * 180.02562 * 12 11 9 32 32 H 1.08997 * 109.47322 * 270.00422 * 18 17 8 33 33 H 1.09002 * 109.46804 * 30.00303 * 18 17 8 34 34 H 1.09001 * 109.46771 * 149.99893 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.7075 1.8313 1.7105 6 6 2.2516 2.0407 -1.2115 7 6 1.9726 1.5314 -2.4771 8 6 2.3498 2.4988 -3.4118 9 6 2.2412 2.4008 -4.8064 10 1 2.5722 3.2163 -5.4323 11 6 1.7033 1.2449 -5.3879 12 7 1.3021 0.2576 -4.6300 13 14 1.5580 1.1149 -7.2458 14 1 2.0778 2.3574 -7.8711 15 1 2.3488 -0.0476 -7.7240 16 1 0.1325 0.9310 -7.6192 17 7 2.8533 3.5631 -2.7013 18 6 3.3764 4.8093 -3.2664 19 7 2.7758 3.2419 -1.3407 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3635 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.0955 3.1411 1.1385 26 1 1.5817 1.6877 2.0284 27 1 4.3883 2.2155 0.9509 28 1 3.8892 2.3454 2.6542 29 1 3.8744 0.7621 1.8408 30 1 1.5410 0.5658 -2.6960 31 1 0.9300 -0.5427 -5.0326 32 1 4.4454 4.7039 -3.4513 33 1 2.8651 5.0256 -4.2044 34 1 3.2079 5.6256 -2.5641 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261031060.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:50 Heat of formation + Delta-G solvation = 50.780111 kcal Electronic energy + Delta-G solvation = -15617.859119 eV Core-core repulsion = 13165.407611 eV Total energy + Delta-G solvation = -2452.451508 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.76779 -37.89819 -35.49016 -33.11211 -32.88792 -30.62826 -29.51206 -27.10759 -26.24649 -24.28072 -22.82794 -21.41810 -19.63927 -18.76376 -17.54251 -16.39714 -16.14055 -15.71673 -15.55382 -14.83058 -14.72358 -14.19395 -14.10259 -13.82883 -13.38433 -13.19438 -13.13540 -12.84133 -12.78118 -12.68478 -12.44810 -12.17182 -11.82522 -11.75950 -11.61365 -11.31236 -10.44379 -10.27940 -8.95992 -8.46913 -7.88595 -6.44764 1.30715 1.42806 1.58682 1.90031 2.10681 2.26806 2.76979 3.00299 3.44354 4.14007 4.23819 4.34195 4.41915 4.61264 4.63670 4.65428 4.70427 4.73683 4.83564 4.97034 5.04929 5.12363 5.17988 5.35807 5.40264 5.48512 5.58215 5.76163 6.03685 6.39075 6.51531 6.72310 7.01885 7.28002 7.37687 7.92603 8.43957 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.029345 B = 0.009233 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.930169 B = 3031.878564 C = 3803.315509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 N -0.615 5.615 4 C 0.135 3.865 5 C -0.154 4.154 6 C 0.329 3.671 7 C -0.420 4.420 8 C 0.238 3.762 9 C -0.479 4.479 10 H 0.082 0.918 11 C 0.033 3.967 12 N -0.813 5.813 13 Si 1.001 2.999 14 H -0.256 1.256 15 H -0.266 1.266 16 H -0.266 1.266 17 N -0.454 5.454 18 C 0.133 3.867 19 N -0.451 5.451 20 H 0.060 0.940 21 H 0.024 0.976 22 H 0.079 0.921 23 H 0.047 0.953 24 H 0.094 0.906 25 H 0.046 0.954 26 H 0.090 0.910 27 H 0.023 0.977 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.146 0.854 31 H 0.285 0.715 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.300 -0.904 4.636 4.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.017 3.983 3 N -0.338 5.338 4 C 0.012 3.988 5 C -0.213 4.213 6 C 0.077 3.923 7 C -0.452 4.452 8 C 0.119 3.881 9 C -0.515 4.515 10 H 0.101 0.899 11 C -0.183 4.183 12 N -0.439 5.439 13 Si 0.821 3.179 14 H -0.179 1.179 15 H -0.191 1.191 16 H -0.191 1.191 17 N -0.245 5.245 18 C -0.010 4.010 19 N -0.284 5.284 20 H 0.079 0.921 21 H 0.043 0.957 22 H 0.098 0.902 23 H 0.066 0.934 24 H 0.112 0.888 25 H 0.065 0.935 26 H 0.108 0.892 27 H 0.042 0.958 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.163 0.837 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.099 -0.071 5.338 5.340 hybrid contribution -0.311 -0.622 -1.287 1.463 sum -0.213 -0.693 4.051 4.116 Atomic orbital electron populations 1.22103 0.96493 1.02085 1.00845 1.21205 0.93998 0.81281 1.01825 1.45777 1.74340 1.13126 1.00592 1.21205 0.96513 0.96346 0.84749 1.22085 0.96961 1.01694 1.00602 1.19262 0.94263 0.91357 0.87446 1.21753 1.29039 1.05547 0.88854 1.19068 0.90180 0.85715 0.93142 1.19017 1.39533 1.03386 0.89565 0.89948 1.26776 0.91998 0.93690 1.05873 1.69846 1.29788 1.05482 1.38814 0.84874 0.78855 0.79443 0.74701 1.17910 1.19070 1.19057 1.48318 1.57993 1.15447 1.02717 1.21333 0.98071 0.83290 0.98258 1.76722 1.38443 1.17600 0.95673 0.92068 0.95686 0.90225 0.93414 0.88759 0.93511 0.89168 0.95775 0.90109 0.92298 0.83673 0.90438 0.92917 0.90416 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.08 10.24 71.98 0.74 -4.34 16 2 C 0.14 4.98 6.08 86.38 0.53 5.51 16 3 N -0.61 -25.88 2.61 -703.44 -1.84 -27.72 16 4 C 0.13 4.62 6.26 86.38 0.54 5.17 16 5 C -0.15 -4.74 10.24 71.98 0.74 -4.00 16 6 C 0.33 17.47 7.54 133.00 1.00 18.47 16 7 C -0.42 -24.39 8.82 22.87 0.20 -24.19 16 8 C 0.24 13.83 6.75 39.09 0.26 14.09 16 9 C -0.48 -26.17 9.01 23.21 0.21 -25.96 16 10 H 0.08 4.18 7.20 -2.91 -0.02 4.16 16 11 C 0.03 1.68 5.50 85.31 0.47 2.15 16 12 N -0.81 -42.94 10.29 21.86 0.23 -42.71 16 13 Si 1.00 37.97 29.56 68.60 2.03 40.00 16 14 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 15 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 16 H -0.27 -9.67 7.11 99.48 0.71 -8.97 16 17 N -0.45 -24.35 4.09 -360.81 -1.48 -25.83 16 18 C 0.13 5.47 11.27 127.77 1.44 6.91 16 19 N -0.45 -24.56 11.93 -55.13 -0.66 -25.22 16 20 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 21 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 23 H 0.05 1.95 7.00 -2.39 -0.02 1.93 16 24 H 0.09 2.61 8.07 -2.39 -0.02 2.59 16 25 H 0.05 1.79 7.73 -2.38 -0.02 1.77 16 26 H 0.09 2.43 8.07 -2.39 -0.02 2.41 16 27 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.15 8.68 5.05 -2.91 -0.01 8.66 16 31 H 0.28 13.46 8.30 -92.70 -0.77 12.69 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.08 2.97 7.40 -2.39 -0.02 2.95 16 34 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -68.52 285.45 5.48 -63.04 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 1.07 Total: 24.63 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 6.13 Total: -6.20 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -3.75 Total: -121.48 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Total: -68.52 5.48 -63.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031060.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.822 kcal (2) G-P(sol) polarization free energy of solvation -68.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds