Wall clock time and date at job start Mon Mar 30 2020 03:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99939 * 2 1 4 4 H 1.48497 * 109.46823 * 89.99681 * 3 2 1 5 5 H 1.48502 * 109.47428 * 210.00221 * 3 2 1 6 6 H 1.48504 * 109.47132 * 330.00353 * 3 2 1 7 7 C 1.37874 * 120.00227 * 180.27894 * 2 1 3 8 8 H 1.08005 * 119.99890 * 194.03794 * 7 2 1 9 9 C 1.50698 * 120.00272 * 14.04320 * 7 2 1 10 10 N 1.46909 * 112.84444 * 263.37424 * 9 7 2 11 11 C 1.48001 * 111.00352 * 63.03986 * 10 9 7 12 12 C 1.50441 * 112.82502 * 191.34653 * 11 10 9 13 13 C 1.54311 * 108.50206 * 93.72767 * 12 11 10 14 14 C 1.45881 * 112.18349 * 281.46375 * 13 12 11 15 15 C 1.54309 * 112.18811 * 61.11848 * 14 13 12 16 16 C 1.47997 * 110.99507 * 294.31662 * 10 9 7 17 17 C 1.53777 * 113.62078 * 132.06215 * 9 7 2 18 18 C 1.53778 * 87.08213 * 220.01685 * 17 9 7 19 19 C 1.53782 * 87.08211 * 25.43429 * 18 17 9 20 20 H 0.97000 * 119.99494 * 185.93953 * 1 2 3 21 21 H 1.09001 * 108.80706 * 312.20929 * 11 10 9 22 22 H 1.08997 * 108.81224 * 70.47999 * 11 10 9 23 23 H 1.09000 * 109.63426 * 334.02326 * 12 11 10 24 24 H 1.08998 * 109.79632 * 213.52827 * 12 11 10 25 25 H 1.09004 * 108.94108 * 160.76491 * 13 12 11 26 26 H 1.08999 * 108.93788 * 42.15623 * 13 12 11 27 27 H 1.09001 * 108.93550 * 300.42349 * 14 13 12 28 28 H 1.08997 * 108.86562 * 181.77208 * 14 13 12 29 29 H 1.09003 * 109.63587 * 161.75917 * 15 14 13 30 30 H 1.09003 * 109.79640 * 41.25955 * 15 14 13 31 31 H 1.09006 * 108.80939 * 205.70748 * 16 10 9 32 32 H 1.08998 * 108.81705 * 324.08568 * 16 10 9 33 33 H 1.09001 * 113.61311 * 334.57131 * 17 9 7 34 34 H 1.08998 * 113.61155 * 105.46929 * 17 9 7 35 35 H 1.08993 * 113.61853 * 270.88320 * 18 17 9 36 36 H 1.09004 * 113.69146 * 139.98904 * 18 17 9 37 37 H 1.09001 * 113.61250 * 220.02189 * 19 18 17 38 38 H 1.08999 * 113.61915 * 89.11472 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 1.4001 5 1 3.5467 1.4403 -0.7001 6 1 1.4465 2.6528 -0.7000 7 6 2.0045 -1.1940 -0.0058 8 1 3.0604 -1.2090 0.2210 9 6 1.2849 -2.4781 -0.3287 10 7 0.8633 -3.2129 0.8714 11 6 -0.1137 -2.4276 1.6584 12 6 -0.3679 -3.0104 3.0218 13 6 0.5762 -2.3244 4.0314 14 6 1.9323 -2.8584 3.9680 15 6 2.5771 -2.6484 2.5819 16 6 2.0346 -3.6890 1.6405 17 6 2.0158 -3.3507 -1.3627 18 6 0.6347 -3.6525 -1.9679 19 6 0.1688 -2.3128 -1.3737 20 1 -0.4849 -0.8356 0.0869 21 1 0.2645 -1.4120 1.7751 22 1 -1.0556 -2.3889 1.1114 23 1 -0.1696 -4.0821 3.0049 24 1 -1.4039 -2.8342 3.3112 25 1 0.1848 -2.4713 5.0381 26 1 0.6064 -1.2560 3.8179 27 1 1.9026 -3.9259 4.1863 28 1 2.5427 -2.3605 4.7213 29 1 3.6590 -2.7546 2.6613 30 1 2.3332 -1.6539 2.2082 31 1 1.7432 -4.5670 2.2172 32 1 2.8217 -3.9734 0.9422 33 1 2.6696 -2.7855 -2.0269 34 1 2.5032 -4.2244 -0.9301 35 1 0.1445 -4.5200 -1.5262 36 1 0.6288 -3.6722 -3.0577 37 1 -0.8348 -2.3486 -0.9499 38 1 0.3176 -1.4638 -2.0409 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261037680.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:02 Heat of formation + Delta-G solvation = 20.808964 kcal Electronic energy + Delta-G solvation = -17166.703535 eV Core-core repulsion = 14816.492724 eV Total energy + Delta-G solvation = -2350.210811 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.27009 -36.80079 -32.57370 -31.98527 -31.24428 -26.29810 -25.32092 -24.59786 -23.28467 -22.04917 -19.93801 -19.28836 -17.80044 -16.64318 -15.48785 -14.85737 -14.30248 -13.81405 -13.72657 -13.16165 -12.88268 -12.44482 -12.26651 -12.20013 -11.60001 -11.32712 -11.04792 -10.75959 -10.65229 -10.30705 -10.22836 -10.14294 -10.02259 -9.92674 -9.86168 -9.52278 -9.40269 -8.74208 -8.59300 -8.29259 -6.79631 -6.25766 -4.04096 3.40663 3.45354 3.60418 4.51985 4.96386 5.33483 5.36597 5.41842 5.59973 5.82941 5.87393 6.00128 6.02562 6.11234 6.17017 6.22394 6.30873 6.37848 6.48467 6.58026 6.61642 6.69352 6.73271 6.81122 6.82802 6.91260 6.93560 7.00615 7.15284 7.26915 7.41599 7.42909 7.63820 8.13462 8.30519 8.53943 8.65287 8.91996 9.65031 11.03269 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.021112 B = 0.015433 C = 0.011489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.960949 B = 1813.817322 C = 2436.621660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.034 3.966 3 Si 1.051 2.949 4 H -0.291 1.291 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.606 4.606 8 H 0.048 0.952 9 C 0.200 3.800 10 N -0.536 5.536 11 C 0.061 3.939 12 C -0.117 4.117 13 C -0.116 4.116 14 C -0.111 4.111 15 C -0.155 4.155 16 C 0.082 3.918 17 C -0.124 4.124 18 C -0.142 4.142 19 C -0.108 4.108 20 H 0.285 0.715 21 H 0.069 0.931 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.102 0.898 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.041 0.959 37 H 0.047 0.953 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.428 -5.004 3.758 6.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.172 4.172 3 Si 0.880 3.120 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.646 4.646 8 H 0.066 0.934 9 C 0.113 3.887 10 N -0.261 5.261 11 C -0.066 4.066 12 C -0.154 4.154 13 C -0.154 4.154 14 C -0.149 4.149 15 C -0.194 4.194 16 C -0.046 4.046 17 C -0.162 4.162 18 C -0.179 4.179 19 C -0.147 4.147 20 H 0.099 0.901 21 H 0.088 0.912 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.121 0.879 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.966 -3.771 3.533 5.257 hybrid contribution 0.715 -0.885 0.415 1.211 sum 1.680 -4.657 3.948 6.332 Atomic orbital electron populations 1.70762 1.06989 1.32602 1.44237 1.25544 0.96343 1.01799 0.93547 0.83837 0.75256 0.76265 0.76644 1.21792 1.21581 1.20972 1.22165 0.96676 0.92939 1.52777 0.93405 1.19771 0.92178 0.90706 0.86074 1.62208 1.13759 1.42610 1.07554 1.21717 0.95214 0.98104 0.91564 1.21426 0.98025 1.00208 0.95785 1.20561 0.95752 1.00858 0.98222 1.20521 0.96381 0.99941 0.98034 1.22121 0.98304 1.04412 0.94556 1.21435 0.92563 0.95735 0.94915 1.22933 0.95371 0.98703 0.99214 1.22813 0.98590 0.98921 0.97593 1.22809 0.97989 0.95169 0.98688 0.90070 0.91247 0.93081 0.91979 0.92573 0.93583 0.92118 0.93320 0.93572 0.93562 0.87929 0.93752 0.92794 0.91190 0.93636 0.91285 0.93991 0.93422 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.24 11.98 55.43 0.66 -24.58 16 2 C 0.03 0.92 4.37 -17.82 -0.08 0.84 16 3 Si 1.05 24.36 29.93 -169.99 -5.09 19.27 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.61 -15.71 5.25 -34.44 -0.18 -15.89 16 8 H 0.05 1.29 7.63 -52.48 -0.40 0.89 16 9 C 0.20 4.71 0.24 -131.94 -0.03 4.68 16 10 N -0.54 -11.73 4.51 -220.63 -1.00 -12.72 16 11 C 0.06 1.34 3.45 -4.50 -0.02 1.32 16 12 C -0.12 -2.11 5.63 -27.32 -0.15 -2.27 16 13 C -0.12 -2.00 5.30 -29.41 -0.16 -2.16 16 14 C -0.11 -1.87 5.30 -29.42 -0.16 -2.03 16 15 C -0.16 -3.02 5.20 -27.32 -0.14 -3.17 16 16 C 0.08 1.63 4.91 -4.49 -0.02 1.61 16 17 C -0.12 -2.67 6.98 -25.92 -0.18 -2.85 16 18 C -0.14 -2.89 8.00 -25.92 -0.21 -3.09 16 19 C -0.11 -2.54 5.06 -25.92 -0.13 -2.67 16 20 H 0.28 7.73 3.09 -40.82 -0.13 7.60 16 21 H 0.07 1.73 3.83 -51.93 -0.20 1.53 16 22 H 0.05 1.17 6.46 -51.93 -0.34 0.84 16 23 H 0.06 1.10 7.08 -51.93 -0.37 0.73 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.16 7.52 -51.93 -0.39 0.77 16 27 H 0.05 0.76 7.52 -51.93 -0.39 0.37 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.10 2.37 4.75 -51.93 -0.25 2.13 16 31 H 0.04 0.82 6.59 -51.93 -0.34 0.48 16 32 H 0.05 1.10 6.22 -51.93 -0.32 0.77 16 33 H 0.07 1.53 8.09 -51.93 -0.42 1.11 16 34 H 0.04 0.93 6.75 -51.93 -0.35 0.58 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 1.14 6.26 -51.93 -0.33 0.82 16 38 H 0.07 1.89 7.61 -51.93 -0.40 1.50 16 LS Contribution 265.66 15.07 4.00 4.00 Total: -1.00 -26.58 265.66 -8.81 -35.39 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.94 Total: 4.31 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: -1.45 Total: -25.67 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: -0.33 Total: -37.30 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -5.09 Total: 19.27 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -26.58 -8.81 -35.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261037680.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.201 kcal (2) G-P(sol) polarization free energy of solvation -26.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds