Wall clock time and date at job start Mon Mar 30 2020 03:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99939 * 2 1 4 4 H 1.48497 * 109.46823 * 89.99681 * 3 2 1 5 5 H 1.48502 * 109.47428 * 210.00221 * 3 2 1 6 6 H 1.48504 * 109.47132 * 330.00353 * 3 2 1 7 7 C 1.37874 * 120.00227 * 180.27894 * 2 1 3 8 8 H 1.08005 * 119.99890 * 194.03794 * 7 2 1 9 9 C 1.50698 * 120.00272 * 14.04320 * 7 2 1 10 10 N 1.46909 * 112.84444 * 263.37424 * 9 7 2 11 11 C 1.48001 * 111.00352 * 63.03986 * 10 9 7 12 12 C 1.50441 * 112.82502 * 191.34653 * 11 10 9 13 13 C 1.54311 * 108.50206 * 93.72767 * 12 11 10 14 14 C 1.45881 * 112.18349 * 281.46375 * 13 12 11 15 15 C 1.54309 * 112.18811 * 61.11848 * 14 13 12 16 16 C 1.47997 * 110.99507 * 294.31662 * 10 9 7 17 17 C 1.53777 * 113.62078 * 132.06215 * 9 7 2 18 18 C 1.53778 * 87.08213 * 220.01685 * 17 9 7 19 19 C 1.53782 * 87.08211 * 25.43429 * 18 17 9 20 20 H 0.97000 * 119.99494 * 185.93953 * 1 2 3 21 21 H 1.09001 * 108.80706 * 312.20929 * 11 10 9 22 22 H 1.08997 * 108.81224 * 70.47999 * 11 10 9 23 23 H 1.09000 * 109.63426 * 334.02326 * 12 11 10 24 24 H 1.08998 * 109.79632 * 213.52827 * 12 11 10 25 25 H 1.09004 * 108.94108 * 160.76491 * 13 12 11 26 26 H 1.08999 * 108.93788 * 42.15623 * 13 12 11 27 27 H 1.09001 * 108.93550 * 300.42349 * 14 13 12 28 28 H 1.08997 * 108.86562 * 181.77208 * 14 13 12 29 29 H 1.09003 * 109.63587 * 161.75917 * 15 14 13 30 30 H 1.09003 * 109.79640 * 41.25955 * 15 14 13 31 31 H 1.09006 * 108.80939 * 205.70748 * 16 10 9 32 32 H 1.08998 * 108.81705 * 324.08568 * 16 10 9 33 33 H 1.09001 * 113.61311 * 334.57131 * 17 9 7 34 34 H 1.08998 * 113.61155 * 105.46929 * 17 9 7 35 35 H 1.08993 * 113.61853 * 270.88320 * 18 17 9 36 36 H 1.09004 * 113.69146 * 139.98904 * 18 17 9 37 37 H 1.09001 * 113.61250 * 220.02189 * 19 18 17 38 38 H 1.08999 * 113.61915 * 89.11472 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 1.4001 5 1 3.5467 1.4403 -0.7001 6 1 1.4465 2.6528 -0.7000 7 6 2.0045 -1.1940 -0.0058 8 1 3.0604 -1.2090 0.2210 9 6 1.2849 -2.4781 -0.3287 10 7 0.8633 -3.2129 0.8714 11 6 -0.1137 -2.4276 1.6584 12 6 -0.3679 -3.0104 3.0218 13 6 0.5762 -2.3244 4.0314 14 6 1.9323 -2.8584 3.9680 15 6 2.5771 -2.6484 2.5819 16 6 2.0346 -3.6890 1.6405 17 6 2.0158 -3.3507 -1.3627 18 6 0.6347 -3.6525 -1.9679 19 6 0.1688 -2.3128 -1.3737 20 1 -0.4849 -0.8356 0.0869 21 1 0.2645 -1.4120 1.7751 22 1 -1.0556 -2.3889 1.1114 23 1 -0.1696 -4.0821 3.0049 24 1 -1.4039 -2.8342 3.3112 25 1 0.1848 -2.4713 5.0381 26 1 0.6064 -1.2560 3.8179 27 1 1.9026 -3.9259 4.1863 28 1 2.5427 -2.3605 4.7213 29 1 3.6590 -2.7546 2.6613 30 1 2.3332 -1.6539 2.2082 31 1 1.7432 -4.5670 2.2172 32 1 2.8217 -3.9734 0.9422 33 1 2.6696 -2.7855 -2.0269 34 1 2.5032 -4.2244 -0.9301 35 1 0.1445 -4.5200 -1.5262 36 1 0.6288 -3.6722 -3.0577 37 1 -0.8348 -2.3486 -0.9499 38 1 0.3176 -1.4638 -2.0409 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261037680.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:01 Heat of formation + Delta-G solvation = 6.265856 kcal Electronic energy + Delta-G solvation = -17167.334171 eV Core-core repulsion = 14816.492724 eV Total energy + Delta-G solvation = -2350.841447 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.99586 -38.40780 -34.48420 -33.64435 -32.84017 -28.11255 -27.01585 -26.38837 -24.95089 -23.86381 -21.42264 -20.92389 -19.66562 -18.47500 -17.20390 -16.43761 -15.91556 -15.62996 -15.52936 -14.81217 -14.54314 -14.13146 -13.91502 -13.82595 -13.33047 -12.97495 -12.84994 -12.54235 -12.30672 -12.05135 -12.02319 -11.92902 -11.61017 -11.50510 -11.42534 -11.17421 -10.93558 -10.56003 -10.45826 -10.31852 -8.63552 -8.31849 -6.11468 1.50678 1.56273 1.73913 2.59356 3.16546 3.45574 3.91153 3.96612 4.05080 4.14237 4.26594 4.32701 4.42045 4.45886 4.60952 4.64125 4.82402 4.86810 4.91170 4.95025 5.07633 5.10633 5.15942 5.20591 5.22950 5.29798 5.35059 5.36299 5.46990 5.59038 5.62515 5.75816 5.83698 6.21158 6.28812 6.72649 6.73434 6.94428 7.62028 8.96159 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.021112 B = 0.015433 C = 0.011489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.960949 B = 1813.817322 C = 2436.621660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.005 4.005 3 Si 1.087 2.913 4 H -0.284 1.284 5 H -0.280 1.280 6 H -0.287 1.287 7 C -0.602 4.602 8 H 0.032 0.968 9 C 0.188 3.812 10 N -0.534 5.534 11 C 0.070 3.930 12 C -0.111 4.111 13 C -0.113 4.113 14 C -0.107 4.107 15 C -0.153 4.153 16 C 0.081 3.919 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.110 4.110 20 H 0.281 0.719 21 H 0.035 0.965 22 H 0.029 0.971 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.032 0.968 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.032 0.968 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.002 -6.567 4.793 8.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.913 3.087 4 H -0.211 1.211 5 H -0.205 1.205 6 H -0.213 1.213 7 C -0.642 4.642 8 H 0.050 0.950 9 C 0.100 3.900 10 N -0.258 5.258 11 C -0.058 4.058 12 C -0.149 4.149 13 C -0.150 4.150 14 C -0.144 4.144 15 C -0.192 4.192 16 C -0.047 4.047 17 C -0.158 4.158 18 C -0.158 4.158 19 C -0.149 4.149 20 H 0.095 0.905 21 H 0.054 0.946 22 H 0.047 0.953 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.553 -5.348 4.572 7.205 hybrid contribution 0.545 -0.410 0.098 0.689 sum 2.098 -5.758 4.670 7.705 Atomic orbital electron populations 1.70813 1.07677 1.32560 1.46296 1.26451 0.96490 1.04449 0.93384 0.83330 0.74706 0.73698 0.76949 1.21058 1.20506 1.21333 1.22292 0.95819 0.94277 1.51830 0.94978 1.19899 0.92364 0.90601 0.87164 1.62187 1.14504 1.41664 1.07487 1.21598 0.93964 0.96814 0.93377 1.21398 0.99279 1.00613 0.93606 1.20525 0.96083 0.98936 0.99470 1.20487 0.95957 1.01503 0.96463 1.22008 0.99191 1.01801 0.96187 1.21531 0.91738 0.96470 0.94967 1.22858 0.95887 0.98630 0.98439 1.22696 0.97074 0.97155 0.98864 1.22673 0.97279 0.96159 0.98780 0.90535 0.94647 0.95260 0.90739 0.91178 0.90466 0.94933 0.91062 0.92059 0.92628 0.92017 0.91442 0.93322 0.91878 0.92210 0.90105 0.91857 0.94899 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.68 11.98 21.45 0.26 -53.42 16 2 C -0.01 -0.30 4.37 84.65 0.37 0.07 16 3 Si 1.09 50.15 29.93 68.60 2.05 52.20 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 7 C -0.60 -31.82 5.25 25.60 0.13 -31.69 16 8 H 0.03 1.76 7.63 -2.91 -0.02 1.73 16 9 C 0.19 8.87 0.24 3.31 0.00 8.87 16 10 N -0.53 -22.97 4.51 -851.93 -3.84 -26.81 16 11 C 0.07 3.08 3.45 85.26 0.29 3.37 16 12 C -0.11 -3.82 5.63 30.21 0.17 -3.65 16 13 C -0.11 -3.63 5.30 28.86 0.15 -3.48 16 14 C -0.11 -3.28 5.30 28.86 0.15 -3.12 16 15 C -0.15 -5.75 5.20 30.21 0.16 -5.60 16 16 C 0.08 3.07 4.91 85.27 0.42 3.49 16 17 C -0.12 -5.03 6.98 31.12 0.22 -4.82 16 18 C -0.12 -4.72 8.00 31.12 0.25 -4.47 16 19 C -0.11 -5.26 5.06 31.12 0.16 -5.10 16 20 H 0.28 15.86 3.09 -92.71 -0.29 15.57 16 21 H 0.04 1.81 3.83 -2.39 -0.01 1.80 16 22 H 0.03 1.37 6.46 -2.39 -0.02 1.36 16 23 H 0.07 2.39 7.08 -2.39 -0.02 2.37 16 24 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.03 1.22 7.52 -2.39 -0.02 1.20 16 27 H 0.07 1.91 7.52 -2.39 -0.02 1.89 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.06 2.87 4.75 -2.39 -0.01 2.86 16 31 H 0.07 2.27 6.59 -2.38 -0.02 2.25 16 32 H 0.05 1.89 6.22 -2.39 -0.01 1.87 16 33 H 0.06 2.71 8.09 -2.39 -0.02 2.69 16 34 H 0.06 2.32 6.75 -2.39 -0.02 2.30 16 35 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.03 1.62 6.26 -2.39 -0.01 1.60 16 38 H 0.05 2.43 7.61 -2.39 -0.02 2.42 16 Total: -1.00 -57.87 265.66 2.45 -55.42 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 1.51 Total: 18.74 kcal Atomic # 6 Polarization: -48.60 SS G_CDS: 2.47 Total: -46.13 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -3.59 Total: -80.23 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 2.05 Total: 52.20 kcal Total: -57.87 2.45 -55.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261037680.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.682 kcal (2) G-P(sol) polarization free energy of solvation -57.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds