Wall clock time and date at job start Mon Mar 30 2020 03:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00345 * 2 1 4 4 H 1.48504 * 109.46727 * 269.99792 * 3 2 1 5 5 H 1.48493 * 109.47091 * 29.99457 * 3 2 1 6 6 H 1.48505 * 109.47417 * 150.00039 * 3 2 1 7 7 C 1.37878 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00019 * 171.01991 * 7 2 1 9 9 C 1.50699 * 120.00336 * 351.01932 * 7 2 1 10 10 N 1.46902 * 110.01630 * 84.96603 * 9 7 2 11 11 C 1.46852 * 110.99994 * 59.29832 * 10 9 7 12 12 C 1.53036 * 109.52170 * 174.16154 * 11 10 9 13 13 C 1.53114 * 109.31066 * 59.16296 * 12 11 10 14 14 C 1.53124 * 109.15891 * 302.39984 * 13 12 11 15 15 C 1.46854 * 110.99839 * 295.09228 * 10 9 7 16 16 C 1.54264 * 110.03671 * 206.35500 * 9 7 2 17 17 C 1.54968 * 104.15675 * 95.75272 * 16 9 7 18 18 C 1.54898 * 102.77590 * 37.89075 * 17 16 9 19 19 C 1.53872 * 110.03229 * 323.57599 * 9 7 2 20 20 H 0.97004 * 119.99865 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.45457 * 54.14734 * 11 10 9 22 22 H 1.08997 * 109.46445 * 294.17833 * 11 10 9 23 23 H 1.09004 * 109.50291 * 179.12416 * 12 11 10 24 24 H 1.09007 * 109.50510 * 299.20248 * 12 11 10 25 25 H 1.08998 * 109.52294 * 62.26809 * 13 12 11 26 26 H 1.09004 * 109.52282 * 182.45882 * 13 12 11 27 27 H 1.08997 * 109.47288 * 297.65297 * 14 13 12 28 28 H 1.09003 * 109.53704 * 177.57114 * 14 13 12 29 29 H 1.08992 * 109.46412 * 305.85448 * 15 10 9 30 30 H 1.08995 * 109.45866 * 65.82482 * 15 10 9 31 31 H 1.08994 * 110.49177 * 214.40113 * 16 9 7 32 32 H 1.08998 * 110.48646 * 337.04966 * 16 9 7 33 33 H 1.08993 * 110.72486 * 279.57547 * 17 16 9 34 34 H 1.09007 * 110.92055 * 156.29577 * 17 16 9 35 35 H 1.08998 * 110.48500 * 203.39974 * 18 17 16 36 36 H 1.08998 * 110.48304 * 80.76313 * 18 17 16 37 37 H 1.09001 * 110.03117 * 359.94902 * 19 9 7 38 38 H 1.09000 * 110.03360 * 121.37550 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0746 -1.2000 -0.1455 9 6 1.2648 -2.4911 0.2048 10 7 0.7279 -2.9708 -1.0756 11 6 1.8047 -3.1837 -2.0512 12 6 1.2283 -3.8185 -3.3187 13 6 0.1577 -2.8947 -3.9059 14 6 -0.9268 -2.6495 -2.8531 15 6 -0.2880 -2.0485 -1.5990 16 6 2.2102 -3.5488 0.8109 17 6 1.9399 -3.4700 2.3348 18 6 0.4100 -3.2364 2.3997 19 6 0.1210 -2.2922 1.2146 20 1 -0.4850 0.8401 -0.0004 21 1 2.5569 -3.8462 -1.6229 22 1 2.2633 -2.2268 -2.3005 23 1 2.0251 -3.9621 -4.0486 24 1 0.7822 -4.7822 -3.0727 25 1 0.6114 -1.9449 -4.1887 26 1 -0.2860 -3.3634 -4.7843 27 1 -1.4074 -3.5944 -2.5996 28 1 -1.6702 -1.9580 -3.2497 29 1 -1.0556 -1.8865 -0.8424 30 1 0.1805 -1.0970 -1.8504 31 1 1.9661 -4.5409 0.4312 32 1 3.2491 -3.3011 0.5937 33 1 2.4777 -2.6325 2.7790 34 1 2.2092 -4.4047 2.8267 35 1 0.1364 -2.7612 3.3417 36 1 -0.1251 -4.1779 2.2768 37 1 0.1014 -1.2577 1.5576 38 1 -0.8326 -2.5515 0.7546 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261042297.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:22 Heat of formation + Delta-G solvation = -16.577442 kcal Electronic energy + Delta-G solvation = -17011.601911 eV Core-core repulsion = 14659.769904 eV Total energy + Delta-G solvation = -2351.832007 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.36906 -37.58435 -34.60297 -32.94727 -31.46577 -29.17576 -28.55310 -26.07175 -24.06933 -23.55051 -20.88929 -20.43786 -20.19446 -18.06696 -16.87170 -16.62241 -15.80545 -15.20073 -14.98794 -14.94372 -14.31922 -14.23784 -13.86490 -13.84384 -13.25003 -12.88969 -12.73969 -12.52060 -12.33361 -11.91580 -11.74417 -11.66984 -11.62869 -11.51660 -11.14007 -11.05810 -11.01072 -10.70443 -10.54170 -10.12324 -8.56840 -7.94688 -6.13674 1.34052 1.39139 1.46065 2.42084 3.16065 3.76292 4.13332 4.17647 4.26423 4.30359 4.31312 4.41013 4.69175 4.86330 4.92164 4.96369 5.02295 5.04920 5.09774 5.20321 5.22366 5.25205 5.26515 5.32943 5.36362 5.42281 5.50758 5.56184 5.65887 5.75648 5.79679 5.86636 6.02011 6.18806 6.44101 6.77599 7.07500 7.12428 7.50962 8.92109 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.020108 B = 0.015244 C = 0.010998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.115915 B = 1836.287292 C = 2545.388495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.034 3.966 3 Si 0.929 3.071 4 H -0.286 1.286 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.538 4.538 8 H 0.033 0.967 9 C 0.215 3.785 10 N -0.533 5.533 11 C 0.066 3.934 12 C -0.108 4.108 13 C -0.111 4.111 14 C -0.120 4.120 15 C 0.090 3.910 16 C -0.101 4.101 17 C -0.108 4.108 18 C -0.122 4.122 19 C -0.086 4.086 20 H 0.255 0.745 21 H 0.056 0.944 22 H 0.002 0.998 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.039 0.961 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.019 0.981 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.134 -5.998 -2.202 6.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.167 4.167 3 Si 0.757 3.243 4 H -0.213 1.213 5 H -0.208 1.208 6 H -0.202 1.202 7 C -0.578 4.578 8 H 0.051 0.949 9 C 0.128 3.872 10 N -0.257 5.257 11 C -0.062 4.062 12 C -0.145 4.145 13 C -0.149 4.149 14 C -0.158 4.158 15 C -0.039 4.039 16 C -0.139 4.139 17 C -0.146 4.146 18 C -0.160 4.160 19 C -0.124 4.124 20 H 0.065 0.935 21 H 0.074 0.926 22 H 0.020 0.980 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.058 0.942 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.258 -6.319 -2.111 6.668 hybrid contribution 0.898 2.239 -0.123 2.415 sum 0.640 -4.080 -2.234 4.696 Atomic orbital electron populations 1.70342 1.06082 1.26029 1.49043 1.25360 0.95475 1.00785 0.95110 0.86021 0.79208 0.81535 0.77560 1.21287 1.20846 1.20216 1.21823 0.93315 0.93217 1.49413 0.94899 1.19384 0.91013 0.89985 0.86830 1.62678 1.12514 1.46592 1.03907 1.21758 0.94023 0.97303 0.93159 1.21556 0.98228 0.98829 0.95915 1.21490 0.96573 0.98880 0.97927 1.21733 0.97639 1.00378 0.96065 1.21827 0.94530 0.92875 0.94626 1.22319 0.97833 0.98154 0.95601 1.22303 0.95973 1.00458 0.95864 1.22400 0.96251 0.99140 0.98238 1.22037 0.96664 0.99079 0.94625 0.93462 0.92589 0.98004 0.90991 0.91407 0.94192 0.90500 0.92155 0.92668 0.92433 0.96317 0.92426 0.94296 0.93151 0.90705 0.92784 0.92169 0.91912 0.95113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.64 7.40 21.45 0.16 -46.48 16 2 C 0.03 1.79 4.00 84.66 0.34 2.13 16 3 Si 0.93 43.20 29.55 68.60 2.03 45.22 16 4 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.54 -28.49 6.47 25.60 0.17 -28.32 16 8 H 0.03 1.81 7.60 -2.91 -0.02 1.79 16 9 C 0.22 10.23 0.50 3.50 0.00 10.23 16 10 N -0.53 -24.09 4.39 -846.96 -3.72 -27.81 16 11 C 0.07 2.75 4.88 86.32 0.42 3.17 16 12 C -0.11 -3.56 6.09 30.64 0.19 -3.38 16 13 C -0.11 -3.68 6.00 30.67 0.18 -3.49 16 14 C -0.12 -4.48 6.09 30.65 0.19 -4.30 16 15 C 0.09 4.16 3.61 86.33 0.31 4.47 16 16 C -0.10 -4.20 4.69 31.70 0.15 -4.05 16 17 C -0.11 -4.03 6.91 31.92 0.22 -3.81 16 18 C -0.12 -4.76 6.83 31.67 0.22 -4.55 16 19 C -0.09 -4.06 4.54 31.31 0.14 -3.92 16 20 H 0.26 13.26 8.31 -92.71 -0.77 12.49 16 21 H 0.06 2.24 6.88 -2.39 -0.02 2.22 16 22 H 0.00 0.08 7.32 -2.39 -0.02 0.06 16 23 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 24 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 2.92 5.21 -2.39 -0.01 2.91 16 30 H 0.02 1.00 5.80 -2.39 -0.01 0.98 16 31 H 0.06 2.27 7.88 -2.39 -0.02 2.26 16 32 H 0.04 1.65 7.68 -2.39 -0.02 1.63 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 37 H 0.06 3.34 5.44 -2.39 -0.01 3.33 16 38 H 0.03 1.51 6.14 -2.39 -0.01 1.49 16 Total: -1.00 -54.79 272.95 2.00 -52.79 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 1.01 Total: 12.08 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 2.52 Total: -35.81 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -3.56 Total: -74.29 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -54.79 2.00 -52.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042297.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.216 kcal (2) G-P(sol) polarization free energy of solvation -54.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds