Wall clock time and date at job start Mon Mar 30 2020 03:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99336 * 2 1 4 4 H 1.48496 * 109.47071 * 239.99896 * 3 2 1 5 5 H 1.48497 * 109.47661 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46933 * 120.00302 * 3 2 1 7 7 C 1.37872 * 120.00388 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00096 * 186.18040 * 7 2 1 9 9 C 1.50702 * 119.99823 * 6.17642 * 7 2 1 10 10 H 1.08993 * 109.47178 * 327.72825 * 9 7 2 11 11 N 1.46894 * 109.46950 * 87.73231 * 9 7 2 12 12 C 1.46904 * 110.99982 * 204.99751 * 11 9 7 13 13 C 1.52999 * 109.46911 * 275.00017 * 12 11 9 14 14 C 1.53006 * 109.46765 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47412 * 59.99868 * 14 13 12 16 16 C 1.52996 * 109.47283 * 300.00205 * 15 14 13 17 17 C 1.53002 * 109.47303 * 60.00055 * 16 15 14 18 18 C 1.53002 * 109.46935 * 207.72789 * 9 7 2 19 19 C 1.53000 * 117.49656 * 123.29486 * 18 9 7 20 20 C 1.52995 * 60.00410 * 252.51477 * 19 18 9 21 21 H 0.96997 * 120.00163 * 359.97438 * 1 2 3 22 22 H 1.00898 * 111.00107 * 328.95265 * 11 9 7 23 23 H 1.08996 * 109.46674 * 35.00076 * 12 11 9 24 24 H 1.09004 * 109.47499 * 299.99793 * 13 12 11 25 25 H 1.08990 * 109.47382 * 60.00043 * 13 12 11 26 26 H 1.08997 * 109.46759 * 299.99404 * 14 13 12 27 27 H 1.09006 * 109.46835 * 180.02562 * 14 13 12 28 28 H 1.09003 * 109.47462 * 179.97438 * 15 14 13 29 29 H 1.09006 * 109.47342 * 59.99892 * 15 14 13 30 30 H 1.09004 * 109.47180 * 299.99952 * 16 15 14 31 31 H 1.09004 * 109.47397 * 179.97438 * 16 15 14 32 32 H 1.08997 * 109.47076 * 180.02562 * 17 16 15 33 33 H 1.08991 * 109.47359 * 59.99854 * 17 16 15 34 34 H 1.08996 * 115.55459 * 269.00977 * 18 9 7 35 35 H 1.09001 * 117.49863 * 0.02562 * 19 18 9 36 36 H 1.09002 * 117.49771 * 145.01986 * 19 18 9 37 37 H 1.09006 * 117.49800 * 252.51218 * 20 19 18 38 38 H 1.08999 * 117.52017 * 107.48173 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6966 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0799 -1.1967 0.1002 9 6 1.2577 -2.4953 -0.1415 10 1 0.2763 -2.4031 0.3234 11 7 1.0967 -2.8155 -1.5661 12 6 -0.0684 -3.6837 -1.7820 13 6 0.3365 -5.1434 -1.5671 14 6 -0.8769 -6.0477 -1.7927 15 6 -1.3897 -5.8660 -3.2226 16 6 -1.7946 -4.4063 -3.4376 17 6 -0.5812 -3.5019 -3.2121 18 6 2.0451 -3.6123 0.5464 19 6 1.3321 -4.4079 1.6417 20 6 2.4276 -3.4067 2.0136 21 1 -0.4850 0.8400 0.0004 22 1 1.0290 -1.9750 -2.1202 23 1 -0.8556 -3.4174 -1.0768 24 1 1.1238 -5.4098 -2.2724 25 1 0.7022 -5.2728 -0.5486 26 1 -1.6644 -5.7816 -1.0876 27 1 -0.5886 -7.0877 -1.6391 28 1 -2.2539 -6.5105 -3.3835 29 1 -0.6022 -6.1321 -3.9277 30 1 -2.5821 -4.1400 -2.7326 31 1 -2.1595 -4.2767 -4.4565 32 1 -0.8697 -2.4620 -3.3649 33 1 0.2063 -3.7681 -3.9170 34 1 2.7511 -4.1489 -0.0873 35 1 0.3020 -4.1358 1.8718 36 1 1.5688 -5.4683 1.7285 37 1 3.3851 -3.8085 2.3451 38 1 2.1187 -2.4755 2.4885 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261111302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:30 Heat of formation + Delta-G solvation = -5.288676 kcal Electronic energy + Delta-G solvation = -16122.967182 eV Core-core repulsion = 13771.624693 eV Total energy + Delta-G solvation = -2351.342489 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.36319 -36.52627 -33.60460 -32.11956 -30.27071 -28.69940 -25.64671 -23.18988 -21.99837 -21.40258 -20.91898 -19.25034 -18.83825 -16.33125 -15.03490 -14.82897 -14.72577 -14.05140 -13.88990 -13.53389 -13.17646 -12.87810 -12.24105 -11.85579 -11.70439 -11.31261 -11.21725 -10.92009 -10.86413 -10.65468 -10.63101 -10.48503 -10.19824 -9.94568 -9.69782 -9.49098 -9.26270 -9.22569 -8.65507 -8.40274 -7.02429 -6.08206 -4.12286 3.30221 3.35034 3.38560 4.38682 4.87988 5.01389 5.17516 5.20929 5.29062 5.60703 5.71525 5.79640 5.93355 5.96507 5.99743 6.01486 6.03779 6.05635 6.18206 6.36439 6.38298 6.44378 6.54323 6.62974 6.64911 6.66456 6.83404 6.94339 6.98118 7.07477 7.09574 7.33582 7.59757 7.87592 8.17736 8.74058 8.90705 9.07051 9.53918 10.99134 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026904 B = 0.009249 C = 0.007372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.469353 B = 3026.558517 C = 3797.411204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.505 4.505 8 H 0.058 0.942 9 C 0.230 3.770 10 H 0.032 0.968 11 N -0.684 5.684 12 C 0.091 3.909 13 C -0.110 4.110 14 C -0.119 4.119 15 C -0.116 4.116 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.105 4.105 19 C -0.204 4.204 20 C -0.175 4.175 21 H 0.262 0.738 22 H 0.339 0.661 23 H 0.033 0.967 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.942 -8.562 -3.446 9.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.123 3.877 10 H 0.050 0.950 11 N -0.316 5.316 12 C -0.019 4.019 13 C -0.148 4.148 14 C -0.157 4.157 15 C -0.153 4.153 16 C -0.154 4.154 17 C -0.157 4.157 18 C -0.124 4.124 19 C -0.241 4.241 20 C -0.213 4.213 21 H 0.072 0.928 22 H 0.158 0.842 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.650 -8.948 -3.424 9.722 hybrid contribution -0.320 1.556 0.183 1.599 sum -1.970 -7.392 -3.241 8.308 Atomic orbital electron populations 1.69943 1.05951 1.26908 1.50301 1.25063 0.94836 0.99376 0.94613 0.86649 0.79614 0.82923 0.78777 1.20101 1.21476 1.20239 1.21131 0.93862 0.90008 1.49373 0.92384 1.18841 0.94851 0.89791 0.84181 0.95043 1.60986 1.38113 1.21172 1.11285 1.21417 0.92679 0.93619 0.94194 1.21649 0.96313 0.94538 1.02320 1.21551 0.98764 0.99079 0.96319 1.21511 1.00004 0.96407 0.97412 1.21495 0.98249 0.95089 1.00529 1.21702 0.96999 0.98932 0.98040 1.22466 1.00872 0.99438 0.89585 1.22966 0.97431 0.95762 1.07942 1.22759 0.97458 1.00283 1.00762 0.92826 0.84196 0.94888 0.92507 0.91134 0.92557 0.92853 0.92979 0.92349 0.92356 0.92779 0.92465 0.92021 0.89457 0.89953 0.90795 0.90819 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.12 12.87 55.43 0.71 -24.41 16 2 C 0.06 1.73 5.45 -17.82 -0.10 1.63 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.50 -13.51 7.69 -34.44 -0.26 -13.77 16 8 H 0.06 1.58 7.82 -52.49 -0.41 1.16 16 9 C 0.23 5.63 2.32 -68.87 -0.16 5.47 16 10 H 0.03 0.88 6.46 -51.93 -0.34 0.55 16 11 N -0.68 -15.35 6.16 -100.95 -0.62 -15.98 16 12 C 0.09 1.79 2.50 -67.71 -0.17 1.62 16 13 C -0.11 -1.89 5.18 -26.73 -0.14 -2.03 16 14 C -0.12 -1.72 5.92 -26.73 -0.16 -1.88 16 15 C -0.12 -1.53 5.92 -26.74 -0.16 -1.69 16 16 C -0.12 -1.66 5.92 -26.73 -0.16 -1.82 16 17 C -0.12 -2.02 5.19 -26.73 -0.14 -2.16 16 18 C -0.10 -2.25 3.81 -90.61 -0.35 -2.59 16 19 C -0.20 -3.88 8.84 -26.73 -0.24 -4.12 16 20 C -0.18 -3.52 9.77 -26.73 -0.26 -3.78 16 21 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 22 H 0.34 8.15 7.96 -39.29 -0.31 7.83 16 23 H 0.03 0.74 7.43 -51.93 -0.39 0.35 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.07 1.28 5.09 -51.93 -0.26 1.02 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 1.03 8.12 -51.93 -0.42 0.60 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 35 H 0.08 1.63 8.03 -51.93 -0.42 1.22 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.09 2.07 8.00 -51.93 -0.42 1.65 16 LS Contribution 295.21 15.07 4.45 4.45 Total: -1.00 -26.71 295.21 -9.52 -36.22 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.75 Total: 8.80 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -2.29 Total: -25.12 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.09 Total: -40.38 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.71 -9.52 -36.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.935 kcal (2) G-P(sol) polarization free energy of solvation -26.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds