Wall clock time and date at job start Mon Mar 30 2020 03:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99336 * 2 1 4 4 H 1.48496 * 109.47071 * 239.99896 * 3 2 1 5 5 H 1.48497 * 109.47661 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46933 * 120.00302 * 3 2 1 7 7 C 1.37872 * 120.00388 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00096 * 186.18040 * 7 2 1 9 9 C 1.50702 * 119.99823 * 6.17642 * 7 2 1 10 10 H 1.08993 * 109.47178 * 327.72825 * 9 7 2 11 11 N 1.46894 * 109.46950 * 87.73231 * 9 7 2 12 12 C 1.46904 * 110.99982 * 204.99751 * 11 9 7 13 13 C 1.52999 * 109.46911 * 275.00017 * 12 11 9 14 14 C 1.53006 * 109.46765 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47412 * 59.99868 * 14 13 12 16 16 C 1.52996 * 109.47283 * 300.00205 * 15 14 13 17 17 C 1.53002 * 109.47303 * 60.00055 * 16 15 14 18 18 C 1.53002 * 109.46935 * 207.72789 * 9 7 2 19 19 C 1.53000 * 117.49656 * 123.29486 * 18 9 7 20 20 C 1.52995 * 60.00410 * 252.51477 * 19 18 9 21 21 H 0.96997 * 120.00163 * 359.97438 * 1 2 3 22 22 H 1.00898 * 111.00107 * 328.95265 * 11 9 7 23 23 H 1.08996 * 109.46674 * 35.00076 * 12 11 9 24 24 H 1.09004 * 109.47499 * 299.99793 * 13 12 11 25 25 H 1.08990 * 109.47382 * 60.00043 * 13 12 11 26 26 H 1.08997 * 109.46759 * 299.99404 * 14 13 12 27 27 H 1.09006 * 109.46835 * 180.02562 * 14 13 12 28 28 H 1.09003 * 109.47462 * 179.97438 * 15 14 13 29 29 H 1.09006 * 109.47342 * 59.99892 * 15 14 13 30 30 H 1.09004 * 109.47180 * 299.99952 * 16 15 14 31 31 H 1.09004 * 109.47397 * 179.97438 * 16 15 14 32 32 H 1.08997 * 109.47076 * 180.02562 * 17 16 15 33 33 H 1.08991 * 109.47359 * 59.99854 * 17 16 15 34 34 H 1.08996 * 115.55459 * 269.00977 * 18 9 7 35 35 H 1.09001 * 117.49863 * 0.02562 * 19 18 9 36 36 H 1.09002 * 117.49771 * 145.01986 * 19 18 9 37 37 H 1.09006 * 117.49800 * 252.51218 * 20 19 18 38 38 H 1.08999 * 117.52017 * 107.48173 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6966 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0799 -1.1967 0.1002 9 6 1.2577 -2.4953 -0.1415 10 1 0.2763 -2.4031 0.3234 11 7 1.0967 -2.8155 -1.5661 12 6 -0.0684 -3.6837 -1.7820 13 6 0.3365 -5.1434 -1.5671 14 6 -0.8769 -6.0477 -1.7927 15 6 -1.3897 -5.8660 -3.2226 16 6 -1.7946 -4.4063 -3.4376 17 6 -0.5812 -3.5019 -3.2121 18 6 2.0451 -3.6123 0.5464 19 6 1.3321 -4.4079 1.6417 20 6 2.4276 -3.4067 2.0136 21 1 -0.4850 0.8400 0.0004 22 1 1.0290 -1.9750 -2.1202 23 1 -0.8556 -3.4174 -1.0768 24 1 1.1238 -5.4098 -2.2724 25 1 0.7022 -5.2728 -0.5486 26 1 -1.6644 -5.7816 -1.0876 27 1 -0.5886 -7.0877 -1.6391 28 1 -2.2539 -6.5105 -3.3835 29 1 -0.6022 -6.1321 -3.9277 30 1 -2.5821 -4.1400 -2.7326 31 1 -2.1595 -4.2767 -4.4565 32 1 -0.8697 -2.4620 -3.3649 33 1 0.2063 -3.7681 -3.9170 34 1 2.7511 -4.1489 -0.0873 35 1 0.3020 -4.1358 1.8718 36 1 1.5688 -5.4683 1.7285 37 1 3.3851 -3.8085 2.3451 38 1 2.1187 -2.4755 2.4885 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261111302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:30 Heat of formation + Delta-G solvation = -19.959175 kcal Electronic energy + Delta-G solvation = -16123.603343 eV Core-core repulsion = 13771.624693 eV Total energy + Delta-G solvation = -2351.978650 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.86353 -38.11038 -35.36538 -33.99421 -31.55732 -30.34550 -27.48140 -24.99566 -23.41299 -22.94643 -22.29214 -20.89796 -20.39835 -18.37795 -16.75563 -16.48267 -16.32487 -15.68298 -15.18743 -14.90646 -14.82013 -14.49187 -13.90722 -13.56003 -13.12811 -12.92789 -12.82569 -12.68716 -12.44333 -12.24307 -12.22312 -11.94513 -11.59624 -11.46629 -11.29494 -11.09593 -10.93378 -10.84277 -10.63863 -10.21330 -8.89292 -8.16942 -6.27730 1.40339 1.41667 1.49492 2.40075 3.06403 3.24376 3.70180 3.95403 3.97194 4.14092 4.31809 4.37535 4.43021 4.47437 4.57784 4.68262 4.71975 4.77437 4.83494 4.86668 4.96028 5.06099 5.19072 5.21083 5.27860 5.33740 5.34851 5.42829 5.44712 5.51879 5.57272 5.61249 5.70349 5.78635 6.17616 6.78120 6.89528 7.09665 7.41830 8.89495 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026904 B = 0.009249 C = 0.007372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.469353 B = 3026.558517 C = 3797.411204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.018 3.982 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.051 0.949 9 C 0.237 3.763 10 H -0.012 1.012 11 N -0.679 5.679 12 C 0.092 3.908 13 C -0.104 4.104 14 C -0.116 4.116 15 C -0.111 4.111 16 C -0.112 4.112 17 C -0.114 4.114 18 C -0.121 4.121 19 C -0.180 4.180 20 C -0.173 4.173 21 H 0.261 0.739 22 H 0.324 0.676 23 H -0.003 1.003 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.404 -10.188 -4.098 11.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.182 4.182 3 Si 0.780 3.220 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.129 3.871 10 H 0.006 0.994 11 N -0.309 5.309 12 C -0.018 4.018 13 C -0.142 4.142 14 C -0.154 4.154 15 C -0.149 4.149 16 C -0.151 4.151 17 C -0.152 4.152 18 C -0.140 4.140 19 C -0.217 4.217 20 C -0.211 4.211 21 H 0.070 0.930 22 H 0.141 0.859 23 H 0.015 0.985 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.105 -10.594 -4.073 11.404 hybrid contribution -0.501 2.050 0.400 2.148 sum -1.606 -8.544 -3.673 9.438 Atomic orbital electron populations 1.70077 1.07319 1.27449 1.51467 1.25773 0.95517 1.02525 0.94375 0.85672 0.78385 0.79010 0.78942 1.19466 1.21290 1.19727 1.21397 0.93631 0.91422 1.49156 0.93023 1.18634 0.92807 0.90533 0.85095 0.99440 1.61048 1.39568 1.20480 1.09824 1.21488 0.90650 0.94658 0.95024 1.21569 0.97825 0.93025 1.01746 1.21540 0.97105 0.99528 0.97225 1.21504 1.01298 0.95568 0.96506 1.21491 0.96471 0.95486 1.01605 1.21657 0.98553 0.98764 0.96261 1.22277 1.01803 0.99639 0.90253 1.22946 0.96360 0.97236 1.05109 1.22778 0.99230 0.99849 0.99233 0.93007 0.85896 0.98515 0.92158 0.92226 0.93348 0.90483 0.90459 0.91371 0.93299 0.90555 0.94330 0.91199 0.88920 0.91391 0.87393 0.87867 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.90 12.87 21.45 0.28 -53.63 16 2 C 0.02 0.98 5.45 84.65 0.46 1.44 16 3 Si 0.95 43.88 29.54 68.60 2.03 45.90 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.52 -28.43 7.69 25.60 0.20 -28.23 16 8 H 0.05 2.85 7.82 -2.91 -0.02 2.82 16 9 C 0.24 12.00 2.32 44.17 0.10 12.10 16 10 H -0.01 -0.71 6.46 -2.39 -0.02 -0.73 16 11 N -0.68 -31.47 6.16 -473.31 -2.92 -34.38 16 12 C 0.09 3.68 2.50 44.92 0.11 3.79 16 13 C -0.10 -3.46 5.18 30.60 0.16 -3.30 16 14 C -0.12 -3.08 5.92 30.59 0.18 -2.90 16 15 C -0.11 -2.59 5.92 30.59 0.18 -2.41 16 16 C -0.11 -3.04 5.92 30.59 0.18 -2.86 16 17 C -0.11 -3.88 5.19 30.60 0.16 -3.72 16 18 C -0.12 -5.18 3.81 -10.79 -0.04 -5.22 16 19 C -0.18 -6.65 8.84 30.59 0.27 -6.38 16 20 C -0.17 -6.85 9.77 30.59 0.30 -6.55 16 21 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 22 H 0.32 16.24 7.96 -89.70 -0.71 15.53 16 23 H 0.00 -0.15 7.43 -2.39 -0.02 -0.17 16 24 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 25 H 0.06 2.10 5.09 -2.39 -0.01 2.09 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.04 1.42 8.12 -2.39 -0.02 1.40 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.09 3.88 8.14 -2.39 -0.02 3.86 16 35 H 0.07 2.72 8.03 -2.39 -0.02 2.70 16 36 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 37 H 0.10 3.45 8.14 -2.38 -0.02 3.43 16 38 H 0.07 3.08 8.00 -2.39 -0.02 3.06 16 Total: -1.00 -59.14 295.21 1.94 -57.20 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: 0.30 Total: 29.17 kcal Atomic # 6 Polarization: -46.52 SS G_CDS: 2.26 Total: -44.25 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -2.64 Total: -88.01 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -59.14 1.94 -57.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.236 kcal (2) G-P(sol) polarization free energy of solvation -59.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds