Wall clock time and date at job start Mon Mar 30 2020 02:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47000 * 2 1 4 4 N 1.46505 * 109.47177 * 120.00036 * 2 1 3 5 5 C 1.40808 * 119.99837 * 300.00113 * 4 2 1 6 6 C 1.40214 * 126.06977 * 180.02562 * 5 4 2 7 7 N 1.30857 * 108.36495 * 179.97438 * 6 5 4 8 8 N 1.40069 * 108.36128 * 0.02562 * 7 6 5 9 9 H 0.97001 * 126.07097 * 180.02562 * 8 7 6 10 10 C 1.35705 * 126.06419 * 359.71531 * 5 4 2 11 11 C 1.46497 * 120.00341 * 119.99777 * 4 2 1 12 12 H 1.08996 * 109.47049 * 179.97438 * 11 4 2 13 13 C 1.52997 * 109.47188 * 300.00268 * 11 4 2 14 14 C 1.50706 * 109.46582 * 60.00120 * 11 4 2 15 15 H 1.07999 * 120.00196 * 359.97438 * 14 11 4 16 16 C 1.37879 * 119.99394 * 179.97438 * 14 11 4 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.47474 * 90.00322 * 18 16 14 20 20 H 1.48510 * 109.47116 * 210.00055 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99887 * 18 16 14 22 22 H 1.09001 * 109.47438 * 300.00010 * 1 2 3 23 23 H 1.08993 * 109.47318 * 60.00184 * 1 2 3 24 24 H 1.09006 * 109.47115 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47081 * 239.99742 * 2 1 3 26 26 H 1.09004 * 109.47079 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47487 * 299.99832 * 3 2 1 28 28 H 1.08995 * 109.47414 * 59.99946 * 3 2 1 29 29 H 1.08005 * 125.81280 * 359.96432 * 6 5 4 30 30 H 1.08003 * 126.22937 * 359.97438 * 10 5 4 31 31 H 1.09002 * 109.47153 * 299.99573 * 13 11 4 32 32 H 1.09001 * 109.46832 * 179.97438 * 13 11 4 33 33 H 1.09004 * 109.47261 * 59.99745 * 13 11 4 34 34 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6782 -0.2096 2.4751 6 6 2.0734 -0.7677 3.6991 7 7 1.5639 -0.0464 4.6648 8 7 0.8249 0.9972 4.0933 9 1 0.3394 1.6843 4.5761 10 6 0.9144 0.8800 2.7416 11 6 2.8606 -1.8818 1.0619 12 1 3.1242 -2.2538 2.0518 13 6 2.0956 -2.9636 0.2969 14 6 4.1164 -1.5265 0.3083 15 1 4.2715 -0.5148 -0.0364 16 6 5.0675 -2.4932 0.0590 17 7 4.8785 -3.7252 0.4784 18 14 6.6245 -2.0526 -0.8743 19 1 7.6724 -1.6224 0.0859 20 1 7.1018 -3.2393 -1.6290 21 1 6.3371 -0.9461 -1.8221 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 2.6928 -1.6437 3.8236 30 1 0.4587 1.5339 2.0128 31 1 1.1873 -3.2206 0.8419 32 1 2.7225 -3.8497 0.1966 33 1 1.8323 -2.5912 -0.6932 34 1 5.5474 -4.4053 0.3026 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261113392.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:39 Heat of formation + Delta-G solvation = 66.101554 kcal Electronic energy + Delta-G solvation = -15982.845728 eV Core-core repulsion = 13531.058608 eV Total energy + Delta-G solvation = -2451.787120 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.85047 -38.50285 -35.36251 -33.22210 -31.79687 -31.08818 -28.16908 -27.92899 -27.01484 -23.49648 -22.25330 -22.09989 -20.42198 -18.53897 -17.97870 -16.65445 -15.98091 -15.74589 -15.46434 -15.26677 -14.64463 -14.54850 -14.15039 -13.60599 -13.28501 -13.11035 -12.94729 -12.80078 -12.68905 -12.35338 -12.19127 -11.95265 -11.78444 -11.55700 -11.34296 -11.03337 -10.45597 -10.41544 -10.24693 -8.12150 -7.46338 -6.17835 1.10347 1.42315 1.44225 1.52875 2.18720 2.22936 2.45576 2.92718 3.22121 4.05753 4.21137 4.33854 4.48171 4.61529 4.80234 4.89705 4.90366 4.90973 4.97967 5.06414 5.09831 5.22777 5.26488 5.44216 5.58832 5.60720 5.66174 5.77932 6.01827 6.34294 6.66148 6.71609 6.87630 7.15372 7.30641 7.55505 8.97764 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.028949 B = 0.009558 C = 0.008729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.977037 B = 2928.745549 C = 3207.014755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.157 3.843 3 C -0.160 4.160 4 N -0.610 5.610 5 C 0.069 3.931 6 C -0.011 4.011 7 N -0.302 5.302 8 N -0.468 5.468 9 H 0.452 0.548 10 C -0.041 4.041 11 C 0.287 3.713 12 H 0.013 0.987 13 C -0.133 4.133 14 C -0.526 4.526 15 H 0.052 0.948 16 C 0.017 3.983 17 N -0.917 5.917 18 Si 0.950 3.050 19 H -0.282 1.282 20 H -0.284 1.284 21 H -0.270 1.270 22 H 0.068 0.932 23 H 0.079 0.921 24 H 0.039 0.961 25 H 0.063 0.937 26 H 0.031 0.969 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.164 0.836 30 H 0.202 0.798 31 H 0.018 0.982 32 H 0.063 0.937 33 H 0.031 0.969 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.832 9.615 0.092 13.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.052 3.948 3 C -0.218 4.218 4 N -0.325 5.325 5 C -0.039 4.039 6 C -0.198 4.198 7 N -0.128 5.128 8 N -0.186 5.186 9 H 0.298 0.702 10 C -0.190 4.190 11 C 0.184 3.816 12 H 0.030 0.970 13 C -0.192 4.192 14 C -0.565 4.565 15 H 0.070 0.930 16 C -0.182 4.182 17 N -0.557 5.557 18 Si 0.776 3.224 19 H -0.208 1.208 20 H -0.209 1.209 21 H -0.194 1.194 22 H 0.087 0.913 23 H 0.098 0.902 24 H 0.058 0.942 25 H 0.082 0.918 26 H 0.050 0.950 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.181 0.819 30 H 0.218 0.782 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.787 9.489 1.174 12.986 hybrid contribution 1.097 -0.163 -1.075 1.544 sum -7.690 9.326 0.099 12.088 Atomic orbital electron populations 1.22246 0.94998 1.01575 1.02872 1.20675 0.93681 0.92580 0.87851 1.22241 1.00370 0.96518 1.02646 1.46411 1.55818 1.30339 0.99978 1.18158 1.01945 0.96968 0.86873 1.23558 1.04024 1.02005 0.90261 1.76980 1.12453 1.00920 1.22411 1.45858 1.43195 1.25051 1.04452 0.70178 1.22260 1.08367 1.02087 0.86256 1.18271 0.87068 0.81719 0.94552 0.96957 1.21939 0.97516 1.01324 0.98383 1.21764 1.03737 0.95354 1.35630 0.92975 1.25587 1.00853 0.94954 0.96793 1.69991 1.35785 1.02267 1.47625 0.85684 0.80212 0.77676 0.78782 1.20835 1.20934 1.19437 0.91320 0.90188 0.94179 0.91833 0.94991 0.90336 0.91337 0.81923 0.78160 0.96251 0.91852 0.95005 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.29 9.10 71.98 0.65 -3.63 16 2 C 0.16 5.37 2.31 44.99 0.10 5.48 16 3 C -0.16 -4.72 9.10 71.98 0.65 -4.06 16 4 N -0.61 -25.03 2.44 -654.35 -1.59 -26.63 16 5 C 0.07 2.62 6.19 37.59 0.23 2.85 16 6 C -0.01 -0.44 11.19 85.32 0.95 0.52 16 7 N -0.30 -10.89 12.69 -56.78 -0.72 -11.61 16 8 N -0.47 -13.01 7.41 -56.75 -0.42 -13.44 16 9 H 0.45 8.54 8.96 -213.34 -1.91 6.62 16 10 C -0.04 -1.20 9.00 83.46 0.75 -0.45 16 11 C 0.29 14.19 2.62 44.25 0.12 14.31 16 12 H 0.01 0.69 6.13 -2.39 -0.01 0.67 16 13 C -0.13 -6.36 8.96 71.98 0.64 -5.72 16 14 C -0.53 -28.15 8.14 25.60 0.21 -27.94 16 15 H 0.05 2.81 7.14 -2.91 -0.02 2.79 16 16 C 0.02 0.92 5.30 84.66 0.45 1.37 16 17 N -0.92 -51.71 11.32 21.45 0.24 -51.47 16 18 Si 0.95 43.35 29.54 68.60 2.03 45.38 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 20 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H 0.07 1.66 5.01 -2.39 -0.01 1.65 16 23 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 25 H 0.06 2.48 6.69 -2.39 -0.02 2.46 16 26 H 0.03 1.12 7.64 -2.38 -0.02 1.10 16 27 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.07 1.80 4.97 -2.39 -0.01 1.78 16 29 H 0.16 6.91 6.87 -2.91 -0.02 6.89 16 30 H 0.20 4.55 4.72 -2.91 -0.01 4.53 16 31 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 3.36 6.07 -2.39 -0.01 3.34 16 33 H 0.03 1.44 7.05 -2.38 -0.02 1.43 16 34 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -61.81 268.76 3.51 -58.30 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -0.80 Total: 16.74 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 4.77 Total: -17.27 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -2.49 Total: -103.15 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -61.81 3.51 -58.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261113392.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.401 kcal (2) G-P(sol) polarization free energy of solvation -61.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds