Wall clock time and date at job start Mon Mar 30 2020 03:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00261 * 2 1 4 4 H 1.48495 * 109.47520 * 270.00305 * 3 2 1 5 5 H 1.48506 * 109.46994 * 30.00508 * 3 2 1 6 6 H 1.48500 * 109.46776 * 149.99898 * 3 2 1 7 7 C 1.37881 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00251 * 186.36868 * 7 2 1 9 9 C 1.50697 * 119.99893 * 6.36756 * 7 2 1 10 10 H 1.08996 * 109.47177 * 175.98910 * 9 7 2 11 11 N 1.46903 * 109.47486 * 55.99012 * 9 7 2 12 12 C 1.46905 * 111.00046 * 84.99626 * 11 9 7 13 13 C 1.52998 * 117.51740 * 136.28827 * 12 11 9 14 14 C 1.52998 * 117.49965 * 204.91742 * 12 11 9 15 15 C 1.52997 * 109.47443 * 295.98998 * 9 7 2 16 16 C 1.52997 * 109.47218 * 296.49717 * 15 9 7 17 17 C 1.52997 * 109.47252 * 179.97438 * 16 15 9 18 18 C 1.53000 * 109.47251 * 60.00323 * 17 16 15 19 19 C 1.53005 * 109.46824 * 299.99766 * 18 17 16 20 20 C 1.52994 * 109.47439 * 176.49221 * 15 9 7 21 21 H 0.97005 * 119.99554 * 359.97438 * 1 2 3 22 22 H 1.00905 * 110.99954 * 321.04951 * 11 9 7 23 23 H 1.09004 * 115.54444 * 350.58877 * 12 11 9 24 24 H 1.08994 * 117.49572 * 214.97587 * 13 12 11 25 25 H 1.09000 * 117.49631 * 359.97438 * 13 12 11 26 26 H 1.09002 * 117.50006 * 359.97438 * 14 12 11 27 27 H 1.09002 * 117.49625 * 144.99586 * 14 12 11 28 28 H 1.09007 * 109.46945 * 56.49605 * 15 9 7 29 29 H 1.09007 * 109.47072 * 299.99811 * 16 15 9 30 30 H 1.09004 * 109.47318 * 59.99663 * 16 15 9 31 31 H 1.08993 * 109.47301 * 299.99984 * 17 16 15 32 32 H 1.09002 * 109.47201 * 179.97438 * 17 16 15 33 33 H 1.09001 * 109.47252 * 179.97438 * 18 17 16 34 34 H 1.09001 * 109.47569 * 59.99580 * 18 17 16 35 35 H 1.09001 * 109.46896 * 300.00226 * 19 18 17 36 36 H 1.08996 * 109.47514 * 180.02562 * 19 18 17 37 37 H 1.08996 * 109.47539 * 300.00005 * 20 15 9 38 38 H 1.09001 * 109.47129 * 60.00109 * 20 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0795 -1.1971 0.1032 9 6 1.2579 -2.4951 -0.1459 10 1 1.9698 -3.3189 -0.1957 11 7 0.4568 -2.4651 -1.3768 12 6 1.2606 -2.8694 -2.5381 13 6 0.6206 -3.8323 -3.5401 14 6 0.8207 -2.3620 -3.9129 15 6 0.3350 -2.6908 1.0586 16 6 1.1757 -2.8096 2.3314 17 6 0.2527 -3.0047 3.5359 18 6 -0.5695 -4.2810 3.3469 19 6 -1.4103 -4.1623 2.0741 20 6 -0.4869 -3.9673 0.8693 21 1 -0.4850 0.8401 0.0004 22 1 0.0476 -1.5539 -1.5199 23 1 2.3309 -2.9691 -2.3572 24 1 1.2698 -4.5657 -4.0183 25 1 -0.3969 -4.1665 -3.3375 26 1 -0.0654 -1.7286 -3.9558 27 1 1.6016 -2.1280 -4.6364 28 1 -0.3361 -1.8361 1.1448 29 1 1.8467 -3.6643 2.2451 30 1 1.7612 -1.9001 2.4663 31 1 -0.4180 -2.1498 3.6219 32 1 0.8517 -3.0897 4.4426 33 1 -1.2267 -4.4203 4.2053 34 1 0.1012 -5.1360 3.2609 35 1 -2.0810 -3.3073 2.1602 36 1 -1.9965 -5.0713 1.9397 37 1 -1.0859 -3.8827 -0.0374 38 1 0.1840 -4.8220 0.7830 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261128947.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:37 Heat of formation + Delta-G solvation = -3.918309 kcal Electronic energy + Delta-G solvation = -16286.464422 eV Core-core repulsion = 13935.181356 eV Total energy + Delta-G solvation = -2351.283066 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.00422 -36.53458 -33.97128 -31.13745 -29.83343 -29.00698 -25.84248 -22.68518 -21.66438 -21.53790 -20.07792 -19.81123 -18.56886 -16.28445 -15.20996 -14.85798 -14.40575 -13.82406 -13.36346 -13.28168 -12.93690 -12.80633 -11.92164 -11.55184 -11.34503 -11.27774 -11.11108 -10.89203 -10.84577 -10.65131 -10.34087 -10.20625 -10.16811 -9.88063 -9.56944 -9.38535 -9.11031 -8.95277 -8.85397 -8.36559 -6.82454 -5.98389 -4.16279 3.24569 3.32876 3.35724 4.37355 4.69885 5.12902 5.37152 5.50807 5.61424 5.63016 5.74598 5.82399 6.13171 6.21271 6.25526 6.31508 6.37440 6.42043 6.42841 6.47439 6.57665 6.68760 6.76086 6.82397 6.85737 6.89403 7.03932 7.07645 7.12074 7.33999 7.63140 7.76504 7.78448 8.09343 8.29113 8.58080 8.96323 9.17455 9.54320 10.94018 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.018194 B = 0.012978 C = 0.008383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.604254 B = 2157.051559 C = 3339.356158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.073 3.927 3 Si 0.883 3.117 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.541 4.541 8 H 0.050 0.950 9 C 0.217 3.783 10 H 0.019 0.981 11 N -0.655 5.655 12 C 0.052 3.948 13 C -0.190 4.190 14 C -0.207 4.207 15 C -0.069 4.069 16 C -0.099 4.099 17 C -0.116 4.116 18 C -0.114 4.114 19 C -0.118 4.118 20 C -0.103 4.103 21 H 0.263 0.737 22 H 0.363 0.637 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.037 0.963 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.043 0.957 37 H 0.066 0.934 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.911 -5.183 0.788 5.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.130 4.130 3 Si 0.712 3.288 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.069 0.931 9 C 0.109 3.891 10 H 0.037 0.963 11 N -0.289 5.289 12 C -0.060 4.060 13 C -0.229 4.229 14 C -0.245 4.245 15 C -0.089 4.089 16 C -0.137 4.137 17 C -0.154 4.154 18 C -0.152 4.152 19 C -0.156 4.156 20 C -0.141 4.141 21 H 0.073 0.927 22 H 0.188 0.812 23 H 0.103 0.897 24 H 0.096 0.904 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.098 0.902 28 H 0.119 0.881 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.348 -5.655 0.913 5.884 hybrid contribution 1.086 1.764 -0.180 2.079 sum -0.263 -3.891 0.733 3.968 Atomic orbital electron populations 1.69712 1.05489 1.26576 1.50372 1.24930 0.94810 0.98766 0.94456 0.86733 0.80102 0.83927 0.78082 1.20785 1.21209 1.20058 1.21797 0.93787 0.92050 1.50416 0.93132 1.19127 0.89919 0.93536 0.86538 0.96262 1.60614 1.31955 1.35950 1.00426 1.22234 0.95728 1.00585 0.87436 1.23078 1.02209 0.91987 1.05609 1.23097 1.03112 0.97373 1.00915 1.21075 0.97429 0.96955 0.93419 1.21405 0.97241 1.00560 0.94499 1.21532 0.98432 0.97281 0.98154 1.21502 0.98271 0.98128 0.97267 1.21570 0.98102 1.00045 0.95840 1.21509 0.97680 0.98385 0.96480 0.92686 0.81213 0.89703 0.90367 0.89278 0.89411 0.90201 0.88073 0.94456 0.91649 0.92496 0.93740 0.93658 0.92926 0.92567 0.93838 0.91575 0.94524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.07 9.69 55.43 0.54 -22.53 16 2 C 0.07 1.87 4.99 -17.82 -0.09 1.79 16 3 Si 0.88 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -14.03 7.65 -34.44 -0.26 -14.29 16 8 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 9 C 0.22 5.20 1.70 -68.87 -0.12 5.08 16 10 H 0.02 0.47 7.73 -51.93 -0.40 0.07 16 11 N -0.65 -15.11 5.57 -100.95 -0.56 -15.67 16 12 C 0.05 1.08 6.02 -67.71 -0.41 0.68 16 13 C -0.19 -3.34 10.46 -26.73 -0.28 -3.62 16 14 C -0.21 -3.77 10.33 -26.73 -0.28 -4.05 16 15 C -0.07 -1.55 1.81 -90.63 -0.16 -1.71 16 16 C -0.10 -2.04 5.00 -26.73 -0.13 -2.18 16 17 C -0.12 -2.07 5.92 -26.73 -0.16 -2.22 16 18 C -0.11 -1.85 5.92 -26.73 -0.16 -2.01 16 19 C -0.12 -2.05 5.93 -26.70 -0.16 -2.21 16 20 C -0.10 -2.05 5.01 -26.71 -0.13 -2.19 16 21 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 22 H 0.36 9.12 6.23 -39.29 -0.24 8.88 16 23 H 0.09 1.81 7.77 -51.93 -0.40 1.40 16 24 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 26 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 27 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.10 2.57 6.08 -51.92 -0.32 2.25 16 29 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.06 1.47 7.33 -51.93 -0.38 1.09 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.40 7.51 -51.93 -0.39 1.01 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 293.36 15.07 4.42 4.42 Total: -1.00 -24.94 293.36 -9.72 -34.66 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.75 Total: 10.52 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: -2.34 Total: -26.94 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: -0.03 Total: -38.20 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -24.94 -9.72 -34.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261128947.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.740 kcal (2) G-P(sol) polarization free energy of solvation -24.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds