Wall clock time and date at job start Mon Mar 30 2020 03:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00261 * 2 1 4 4 H 1.48495 * 109.47520 * 270.00305 * 3 2 1 5 5 H 1.48506 * 109.46994 * 30.00508 * 3 2 1 6 6 H 1.48500 * 109.46776 * 149.99898 * 3 2 1 7 7 C 1.37881 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00251 * 186.36868 * 7 2 1 9 9 C 1.50697 * 119.99893 * 6.36756 * 7 2 1 10 10 H 1.08996 * 109.47177 * 175.98910 * 9 7 2 11 11 N 1.46903 * 109.47486 * 55.99012 * 9 7 2 12 12 C 1.46905 * 111.00046 * 84.99626 * 11 9 7 13 13 C 1.52998 * 117.51740 * 136.28827 * 12 11 9 14 14 C 1.52998 * 117.49965 * 204.91742 * 12 11 9 15 15 C 1.52997 * 109.47443 * 295.98998 * 9 7 2 16 16 C 1.52997 * 109.47218 * 296.49717 * 15 9 7 17 17 C 1.52997 * 109.47252 * 179.97438 * 16 15 9 18 18 C 1.53000 * 109.47251 * 60.00323 * 17 16 15 19 19 C 1.53005 * 109.46824 * 299.99766 * 18 17 16 20 20 C 1.52994 * 109.47439 * 176.49221 * 15 9 7 21 21 H 0.97005 * 119.99554 * 359.97438 * 1 2 3 22 22 H 1.00905 * 110.99954 * 321.04951 * 11 9 7 23 23 H 1.09004 * 115.54444 * 350.58877 * 12 11 9 24 24 H 1.08994 * 117.49572 * 214.97587 * 13 12 11 25 25 H 1.09000 * 117.49631 * 359.97438 * 13 12 11 26 26 H 1.09002 * 117.50006 * 359.97438 * 14 12 11 27 27 H 1.09002 * 117.49625 * 144.99586 * 14 12 11 28 28 H 1.09007 * 109.46945 * 56.49605 * 15 9 7 29 29 H 1.09007 * 109.47072 * 299.99811 * 16 15 9 30 30 H 1.09004 * 109.47318 * 59.99663 * 16 15 9 31 31 H 1.08993 * 109.47301 * 299.99984 * 17 16 15 32 32 H 1.09002 * 109.47201 * 179.97438 * 17 16 15 33 33 H 1.09001 * 109.47252 * 179.97438 * 18 17 16 34 34 H 1.09001 * 109.47569 * 59.99580 * 18 17 16 35 35 H 1.09001 * 109.46896 * 300.00226 * 19 18 17 36 36 H 1.08996 * 109.47514 * 180.02562 * 19 18 17 37 37 H 1.08996 * 109.47539 * 300.00005 * 20 15 9 38 38 H 1.09001 * 109.47129 * 60.00109 * 20 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0795 -1.1971 0.1032 9 6 1.2579 -2.4951 -0.1459 10 1 1.9698 -3.3189 -0.1957 11 7 0.4568 -2.4651 -1.3768 12 6 1.2606 -2.8694 -2.5381 13 6 0.6206 -3.8323 -3.5401 14 6 0.8207 -2.3620 -3.9129 15 6 0.3350 -2.6908 1.0586 16 6 1.1757 -2.8096 2.3314 17 6 0.2527 -3.0047 3.5359 18 6 -0.5695 -4.2810 3.3469 19 6 -1.4103 -4.1623 2.0741 20 6 -0.4869 -3.9673 0.8693 21 1 -0.4850 0.8401 0.0004 22 1 0.0476 -1.5539 -1.5199 23 1 2.3309 -2.9691 -2.3572 24 1 1.2698 -4.5657 -4.0183 25 1 -0.3969 -4.1665 -3.3375 26 1 -0.0654 -1.7286 -3.9558 27 1 1.6016 -2.1280 -4.6364 28 1 -0.3361 -1.8361 1.1448 29 1 1.8467 -3.6643 2.2451 30 1 1.7612 -1.9001 2.4663 31 1 -0.4180 -2.1498 3.6219 32 1 0.8517 -3.0897 4.4426 33 1 -1.2267 -4.4203 4.2053 34 1 0.1012 -5.1360 3.2609 35 1 -2.0810 -3.3073 2.1602 36 1 -1.9965 -5.0713 1.9397 37 1 -1.0859 -3.8827 -0.0374 38 1 0.1840 -4.8220 0.7830 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261128947.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:36 Heat of formation + Delta-G solvation = -15.862646 kcal Electronic energy + Delta-G solvation = -16286.982367 eV Core-core repulsion = 13935.181356 eV Total energy + Delta-G solvation = -2351.801011 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.65653 -38.08727 -35.72866 -33.01630 -31.37633 -30.61431 -27.76903 -24.40950 -23.13174 -23.07979 -21.66502 -21.50443 -20.19947 -18.25257 -16.99357 -16.47249 -16.09912 -15.42972 -14.93582 -14.83066 -14.60719 -14.41214 -13.60474 -13.36744 -13.05471 -12.86002 -12.73845 -12.62591 -12.46213 -12.25640 -12.14747 -11.80240 -11.73607 -11.39250 -11.31262 -10.99013 -10.90215 -10.75491 -10.46564 -10.21197 -8.64813 -7.95325 -6.21324 1.36037 1.40529 1.47044 2.41732 3.11149 3.20045 3.73979 4.08940 4.20339 4.20576 4.22784 4.33749 4.60852 4.66930 4.73685 4.83845 4.90587 4.93782 4.97407 4.99160 5.07089 5.08452 5.17154 5.20783 5.31431 5.40172 5.45936 5.48504 5.58201 5.69043 5.70514 5.91501 6.04167 6.18137 6.37702 6.64652 7.03870 7.23254 7.51548 8.92135 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.018194 B = 0.012978 C = 0.008383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.604254 B = 2157.051559 C = 3339.356158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.041 3.959 3 Si 0.934 3.066 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.556 4.556 8 H 0.034 0.966 9 C 0.217 3.783 10 H 0.006 0.994 11 N -0.654 5.654 12 C 0.014 3.986 13 C -0.162 4.162 14 C -0.197 4.197 15 C -0.065 4.065 16 C -0.096 4.096 17 C -0.113 4.113 18 C -0.109 4.109 19 C -0.115 4.115 20 C -0.095 4.095 21 H 0.263 0.737 22 H 0.348 0.652 23 H 0.073 0.927 24 H 0.105 0.895 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.037 0.963 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.045 0.955 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.274 -6.169 0.922 6.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.160 4.160 3 Si 0.761 3.239 4 H -0.206 1.206 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.595 4.595 8 H 0.052 0.948 9 C 0.109 3.891 10 H 0.025 0.975 11 N -0.287 5.287 12 C -0.098 4.098 13 C -0.201 4.201 14 C -0.235 4.235 15 C -0.084 4.084 16 C -0.134 4.134 17 C -0.150 4.150 18 C -0.146 4.146 19 C -0.152 4.152 20 C -0.133 4.133 21 H 0.072 0.928 22 H 0.171 0.829 23 H 0.091 0.909 24 H 0.123 0.877 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.118 0.882 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.707 -6.657 1.039 6.950 hybrid contribution 1.238 2.066 -0.269 2.424 sum -0.469 -4.590 0.770 4.678 Atomic orbital electron populations 1.69825 1.06123 1.26928 1.50329 1.25386 0.95459 1.00851 0.94310 0.85943 0.78951 0.81102 0.77883 1.20647 1.20826 1.20346 1.21910 0.93115 0.93496 1.51015 0.94792 1.19111 0.90061 0.92090 0.87866 0.97539 1.60676 1.32205 1.34798 1.01012 1.22329 0.95246 1.04226 0.87990 1.23098 1.02234 0.92043 1.02708 1.23144 1.03185 0.97990 0.99210 1.20934 0.96999 0.97009 0.93496 1.21334 0.97468 0.99342 0.95273 1.21494 0.98110 0.97970 0.97454 1.21478 0.98390 0.97240 0.97514 1.21535 0.97724 1.00787 0.95177 1.21373 0.97614 0.96981 0.97284 0.92762 0.82934 0.90945 0.87662 0.89309 0.90035 0.88191 0.91185 0.93996 0.94438 0.93684 0.91592 0.90905 0.91931 0.93572 0.91407 0.93204 0.94269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.60 9.69 21.45 0.21 -47.39 16 2 C 0.04 2.15 4.99 84.66 0.42 2.58 16 3 Si 0.93 42.72 29.54 68.60 2.03 44.75 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.56 -29.72 7.65 25.60 0.20 -29.52 16 8 H 0.03 1.87 7.82 -2.91 -0.02 1.85 16 9 C 0.22 10.71 1.70 44.17 0.08 10.78 16 10 H 0.01 0.32 7.73 -2.39 -0.02 0.30 16 11 N -0.65 -30.79 5.57 -473.31 -2.64 -33.43 16 12 C 0.01 0.57 6.02 44.91 0.27 0.84 16 13 C -0.16 -5.40 10.46 30.59 0.32 -5.08 16 14 C -0.20 -6.94 10.33 30.59 0.32 -6.62 16 15 C -0.06 -2.95 1.81 -10.80 -0.02 -2.97 16 16 C -0.10 -3.98 5.00 30.59 0.15 -3.83 16 17 C -0.11 -3.84 5.92 30.59 0.18 -3.66 16 18 C -0.11 -3.21 5.92 30.60 0.18 -3.03 16 19 C -0.11 -3.76 5.93 30.61 0.18 -3.58 16 20 C -0.09 -3.74 5.01 30.61 0.15 -3.59 16 21 H 0.26 13.53 8.31 -92.70 -0.77 12.76 16 22 H 0.35 17.93 6.23 -89.69 -0.56 17.37 16 23 H 0.07 3.14 7.77 -2.38 -0.02 3.12 16 24 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 25 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 26 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 27 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 28 H 0.07 3.65 6.08 -2.38 -0.01 3.64 16 29 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.04 1.72 7.33 -2.38 -0.02 1.71 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.05 2.10 7.51 -2.39 -0.02 2.08 16 38 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -53.88 293.36 2.48 -51.40 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 0.45 Total: 32.34 kcal Atomic # 6 Polarization: -50.10 SS G_CDS: 2.43 Total: -47.67 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -2.43 Total: -80.81 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -53.88 2.48 -51.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261128947.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.541 kcal (2) G-P(sol) polarization free energy of solvation -53.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds